RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 CSRNP3Q8WYN3 585 aa25.56■■□□□ 1.68
SDC3-203ENST00000471567 SHROOM2Q13796 1616 aa25.55■■□□□ 1.68
SDC3-203ENST00000471567 PRXQ9BXM0 1461 aa25.54■■□□□ 1.68
SDC3-203ENST00000471567 JPH4Q96JJ6 628 aa25.54■■□□□ 1.68
SDC3-203ENST00000471567 ARAP1Q96P48 1450 aa25.51■■□□□ 1.67
SDC3-203ENST00000471567 CYB5RLQ6IPT4 315 aa25.49■■□□□ 1.67
SDC3-203ENST00000471567 PRG4Q92954 1404 aaPredicted RBP25.46■■□□□ 1.67
SDC3-203ENST00000471567 ERCC6L2Q5T890 1561 aa25.43■■□□□ 1.66
SDC3-203ENST00000471567 FAM9AQ8IZU1 332 aaPredicted RBP25.42■■□□□ 1.66
SDC3-203ENST00000471567 IQGAP2Q13576 1575 aa25.39■■□□□ 1.66
SDC3-203ENST00000471567 CTTNBP2Q8WZ74 1663 aa25.3■■□□□ 1.64
SDC3-203ENST00000471567 CARMIL2Q6F5E8 1435 aa25.29■■□□□ 1.64
SDC3-203ENST00000471567 UGGT2Q9NYU1 1516 aa25.28■■□□□ 1.64
SDC3-203ENST00000471567 KIF21BO75037 1637 aa25.28■■□□□ 1.64
SDC3-203ENST00000471567 DISP1Q96F81 1524 aa25.22■■□□□ 1.63
SDC3-203ENST00000471567 TNIKQ9UKE5 1360 aa25.21■■□□□ 1.63
SDC3-203ENST00000471567 PTPRGP23470 1445 aa25.18■■□□□ 1.62
SDC3-203ENST00000471567 GOLGA3Q08378 1498 aa25.17■■□□□ 1.62
SDC3-203ENST00000471567 KIAA0556O60303 1618 aa25.15■■□□□ 1.62
SDC3-203ENST00000471567 UBTFP17480 764 aaKnown RBP25.09■■□□□ 1.61
SDC3-203ENST00000471567 TTBK1Q5TCY1 1321 aaPredicted RBP25.07■■□□□ 1.6
SDC3-203ENST00000471567 EHMT2Q96KQ7 1210 aa25.04■■□□□ 1.6
SDC3-203ENST00000471567 ADCY10Q96PN6 1610 aa25.02■■□□□ 1.6
SDC3-203ENST00000471567 NPM1P06748 294 aaKnown RBP eCLIP25.02■■□□□ 1.6
SDC3-203ENST00000471567 UACAQ9BZF9 1416 aa25.02■■□□□ 1.6
SDC3-203ENST00000471567 SAMD9Q5K651 1589 aa25.01■■□□□ 1.59
SDC3-203ENST00000471567 UHRF1BP1LA0JNW5 1464 aa25■■□□□ 1.59
SDC3-203ENST00000471567 P3H3Q8IVL6 736 aa24.97■■□□□ 1.59
SDC3-203ENST00000471567 RANGAP1P46060 587 aaPredicted RBP24.96■■□□□ 1.59
SDC3-203ENST00000471567 TRHP20396 242 aaPredicted RBP24.94■■□□□ 1.58
SDC3-203ENST00000471567 EFCAB5A4FU69 1503 aa24.94■■□□□ 1.58
SDC3-203ENST00000471567 ABCC2Q92887 1545 aa24.94■■□□□ 1.58
SDC3-203ENST00000471567 PLB1Q6P1J6 1458 aa24.89■■□□□ 1.58
SDC3-203ENST00000471567 MAPKBP1O60336 1514 aa24.89■■□□□ 1.57
SDC3-203ENST00000471567 ABCA8O94911 1581 aa24.88■■□□□ 1.57
SDC3-203ENST00000471567 KDM5BQ9UGL1 1544 aa24.86■■□□□ 1.57
SDC3-203ENST00000471567 FHOD3Q2V2M9 1422 aa24.86■■□□□ 1.57
SDC3-203ENST00000471567 ARHGAP35Q9NRY4 1499 aa24.81■■□□□ 1.56
SDC3-203ENST00000471567 ABCC10Q5T3U5 1492 aa24.77■■□□□ 1.56
SDC3-203ENST00000471567 ZCCHC11Q5TAX3 1644 aaKnown RBP24.76■■□□□ 1.55
SDC3-203ENST00000471567 ASXL2Q76L83 1435 aa24.76■■□□□ 1.55
SDC3-203ENST00000471567 RAPGEF6Q8TEU7 1601 aa24.75■■□□□ 1.55
SDC3-203ENST00000471567 FMN1Q68DA7 1419 aa24.73■■□□□ 1.55
SDC3-203ENST00000471567 FAM69CQ0P6D2 419 aa24.72■■□□□ 1.55
SDC3-203ENST00000471567 DIP2BQ9P265 1576 aa24.7■■□□□ 1.54
SDC3-203ENST00000471567 ATP10BO94823 1461 aa24.7■■□□□ 1.54
SDC3-203ENST00000471567 CLIP1P30622 1438 aa24.69■■□□□ 1.54
SDC3-203ENST00000471567 KIF13AQ9H1H9 1805 aa24.69■■□□□ 1.54
SDC3-203ENST00000471567 NUP153P49790 1475 aaKnown RBP24.67■■□□□ 1.54
SDC3-203ENST00000471567 LOC105371045A0A1W2PR82 267 aa24.67■■□□□ 1.54
SDC3-203ENST00000471567 WDR7Q9Y4E6 1490 aa24.64■■□□□ 1.54
SDC3-203ENST00000471567 ARID3CA6NKF2 412 aa24.63■■□□□ 1.53
SDC3-203ENST00000471567 GLI2P10070 1586 aa24.62■■□□□ 1.53
SDC3-203ENST00000471567 EPRSP07814 1512 aaKnown RBP24.61■■□□□ 1.53
SDC3-203ENST00000471567 CEP162Q5TB80 1403 aa24.6■■□□□ 1.53
SDC3-203ENST00000471567 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.59■■□□□ 1.53
SDC3-203ENST00000471567 HNRNPUL2Q1KMD3 747 aaKnown RBP24.59■■□□□ 1.53
SDC3-203ENST00000471567 HECW1Q76N89 1606 aa24.56■■□□□ 1.52
SDC3-203ENST00000471567 KCNH8Q96L42 1107 aa24.54■■□□□ 1.52
SDC3-203ENST00000471567 ATP1B4Q9UN42 357 aaPredicted RBP24.54■■□□□ 1.52
SDC3-203ENST00000471567 CASKIN1Q8WXD9 1431 aa24.53■■□□□ 1.52
SDC3-203ENST00000471567 PLEKHD1A6NEE1 506 aa24.52■■□□□ 1.52
SDC3-203ENST00000471567 MAP3K4Q9Y6R4 1608 aa24.47■■□□□ 1.51
SDC3-203ENST00000471567 CDK13Q14004 1512 aaKnown RBP24.47■■□□□ 1.51
SDC3-203ENST00000471567 PCF11O94913 1555 aaKnown RBP24.46■■□□□ 1.51
SDC3-203ENST00000471567 FYCO1Q9BQS8 1478 aa24.46■■□□□ 1.51
SDC3-203ENST00000471567 CDK11AQ9UQ88 783 aaPredicted RBP24.46■■□□□ 1.51
SDC3-203ENST00000471567 TSPOAP1O95153 1857 aa24.44■■□□□ 1.5
SDC3-203ENST00000471567 CCDC18Q5T9S5 1454 aa24.43■■□□□ 1.5
SDC3-203ENST00000471567 CD109Q6YHK3 1445 aa24.43■■□□□ 1.5
SDC3-203ENST00000471567 CFAP43Q8NDM7 1665 aa24.42■■□□□ 1.5
SDC3-203ENST00000471567 PPRC1Q5VV67 1664 aaKnown RBP24.4■■□□□ 1.5
SDC3-203ENST00000471567 TEX14Q8IWB6 1497 aa24.39■■□□□ 1.5
SDC3-203ENST00000471567 MAGI3Q5TCQ9 1506 aa24.39■■□□□ 1.49
SDC3-203ENST00000471567 ABCA9Q8IUA7 1624 aa24.39■■□□□ 1.49
SDC3-203ENST00000471567 LRRIQ1Q96JM4 1722 aa24.38■■□□□ 1.49
SDC3-203ENST00000471567 TROQ12816 1431 aaPredicted RBP24.35■■□□□ 1.49
SDC3-203ENST00000471567 VPS8Q8N3P4 1428 aa24.31■■□□□ 1.48
SDC3-203ENST00000471567 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.3■■□□□ 1.48
SDC3-203ENST00000471567 KDM6BO15054 1643 aa24.28■■□□□ 1.48
SDC3-203ENST00000471567 PHLDB1Q86UU1 1377 aa24.26■■□□□ 1.47
SDC3-203ENST00000471567 KIF14Q15058 1648 aa24.24■■□□□ 1.47
SDC3-203ENST00000471567 TTC37Q6PGP7 1564 aa24.24■■□□□ 1.47
SDC3-203ENST00000471567 NEO1Q92859 1461 aa24.21■■□□□ 1.47
SDC3-203ENST00000471567 COL17A1Q9UMD9 1497 aaPredicted RBP24.19■■□□□ 1.46
SDC3-203ENST00000471567 PLCH2O75038 1416 aa24.19■■□□□ 1.46
SDC3-203ENST00000471567 MTUS2Q5JR59 1369 aa24.18■■□□□ 1.46
SDC3-203ENST00000471567 ARAP3Q8WWN8 1544 aa24.18■■□□□ 1.46
SDC3-203ENST00000471567 FANCAO15360 1455 aa24.15■■□□□ 1.46
SDC3-203ENST00000471567 CFAP74Q9C0B2 1584 aa24.13■■□□□ 1.45
SDC3-203ENST00000471567 EFCAB2Q5VUJ9 269 aa24.13■■□□□ 1.45
SDC3-203ENST00000471567 MAP3K1Q13233 1512 aa24.13■■□□□ 1.45
SDC3-203ENST00000471567 MYO5CQ9NQX4 1742 aa24.13■■□□□ 1.45
SDC3-203ENST00000471567 TIAM1Q13009 1591 aa24.12■■□□□ 1.45
SDC3-203ENST00000471567 AKNAQ7Z591 1439 aa24.12■■□□□ 1.45
SDC3-203ENST00000471567 EHBP1L1Q8N3D4 1523 aa24.11■■□□□ 1.45
SDC3-203ENST00000471567 APLP2Q06481 763 aa24.06■■□□□ 1.44
SDC3-203ENST00000471567 ARHGAP5Q13017 1502 aa24.05■■□□□ 1.44
SDC3-203ENST00000471567 PREX2Q70Z35 1606 aa24.04■■□□□ 1.44
SDC3-203ENST00000471567 DENND4BO75064 1496 aaPredicted RBP24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms