RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 PRG4Q92954 1404 aaPredicted RBP28.39■■■□□ 2.14
COL9A3-208ENST00000469802 KIAA0586Q9BVV6 1533 aa28.33■■■□□ 2.13
COL9A3-208ENST00000469802 JPH4Q96JJ6 628 aa28.33■■■□□ 2.13
COL9A3-208ENST00000469802 CARMIL1Q5VZK9 1371 aa28.25■■■□□ 2.11
COL9A3-208ENST00000469802 KIF13AQ9H1H9 1805 aa28.17■■■□□ 2.1
COL9A3-208ENST00000469802 ADCY10Q96PN6 1610 aa28.16■■■□□ 2.1
COL9A3-208ENST00000469802 IQGAP2Q13576 1575 aa28.15■■■□□ 2.1
COL9A3-208ENST00000469802 RAPGEF2Q9Y4G8 1499 aa28.08■■■□□ 2.09
COL9A3-208ENST00000469802 MAPKBP1O60336 1514 aa28.08■■■□□ 2.08
COL9A3-208ENST00000469802 CTTNBP2Q8WZ74 1663 aa28■■■□□ 2.07
COL9A3-208ENST00000469802 CARMIL2Q6F5E8 1435 aa27.99■■■□□ 2.07
COL9A3-208ENST00000469802 DISP1Q96F81 1524 aa27.97■■■□□ 2.07
COL9A3-208ENST00000469802 UGGT2Q9NYU1 1516 aa27.97■■■□□ 2.07
COL9A3-208ENST00000469802 DIP2BQ9P265 1576 aa27.97■■■□□ 2.07
COL9A3-208ENST00000469802 ABCC10Q5T3U5 1492 aa27.95■■■□□ 2.07
COL9A3-208ENST00000469802 TNIKQ9UKE5 1360 aa27.95■■■□□ 2.06
COL9A3-208ENST00000469802 PTPRGP23470 1445 aa27.94■■■□□ 2.06
COL9A3-208ENST00000469802 KIAA0556O60303 1618 aa27.92■■■□□ 2.06
COL9A3-208ENST00000469802 PRXQ9BXM0 1461 aa27.89■■■□□ 2.05
COL9A3-208ENST00000469802 NPM1P06748 294 aaKnown RBP eCLIP27.87■■■□□ 2.05
COL9A3-208ENST00000469802 ABCC2Q92887 1545 aa27.87■■■□□ 2.05
COL9A3-208ENST00000469802 UHRF1BP1LA0JNW5 1464 aa27.86■■■□□ 2.05
COL9A3-208ENST00000469802 UACAQ9BZF9 1416 aa27.79■■■□□ 2.04
COL9A3-208ENST00000469802 FAM69CQ0P6D2 419 aa27.77■■■□□ 2.04
COL9A3-208ENST00000469802 TTBK1Q5TCY1 1321 aaPredicted RBP27.74■■■□□ 2.03
COL9A3-208ENST00000469802 KDM5BQ9UGL1 1544 aa27.73■■■□□ 2.03
COL9A3-208ENST00000469802 TSPOAP1O95153 1857 aa27.73■■■□□ 2.03
COL9A3-208ENST00000469802 ZCCHC11Q5TAX3 1644 aaKnown RBP27.72■■■□□ 2.03
COL9A3-208ENST00000469802 GOLGA3Q08378 1498 aa27.71■■■□□ 2.03
COL9A3-208ENST00000469802 ASXL2Q76L83 1435 aa27.7■■■□□ 2.03
COL9A3-208ENST00000469802 GLI2P10070 1586 aa27.69■■■□□ 2.02
COL9A3-208ENST00000469802 PLB1Q6P1J6 1458 aa27.69■■■□□ 2.02
COL9A3-208ENST00000469802 PPRC1Q5VV67 1664 aaKnown RBP27.66■■■□□ 2.02
COL9A3-208ENST00000469802 ABCA8O94911 1581 aa27.64■■■□□ 2.01
COL9A3-208ENST00000469802 EEA1Q15075 1411 aa27.63■■■□□ 2.01
COL9A3-208ENST00000469802 KDM6BO15054 1643 aa27.63■■■□□ 2.01
COL9A3-208ENST00000469802 MAP3K4Q9Y6R4 1608 aa27.59■■■□□ 2.01
COL9A3-208ENST00000469802 SAMD9Q5K651 1589 aa27.58■■■□□ 2.01
COL9A3-208ENST00000469802 CSRNP3Q8WYN3 585 aa27.58■■■□□ 2.01
COL9A3-208ENST00000469802 EPRSP07814 1512 aaKnown RBP27.57■■■□□ 2
COL9A3-208ENST00000469802 WDR7Q9Y4E6 1490 aa27.51■■□□□ 1.99
COL9A3-208ENST00000469802 KIF21BO75037 1637 aa27.49■■□□□ 1.99
COL9A3-208ENST00000469802 CFAP43Q8NDM7 1665 aa27.42■■□□□ 1.98
COL9A3-208ENST00000469802 TEX14Q8IWB6 1497 aa27.38■■□□□ 1.97
COL9A3-208ENST00000469802 RAPGEF6Q8TEU7 1601 aa27.38■■□□□ 1.97
COL9A3-208ENST00000469802 AEBP2Q6ZN18 517 aaPredicted RBP27.34■■□□□ 1.97
COL9A3-208ENST00000469802 P3H3Q8IVL6 736 aa27.32■■□□□ 1.96
COL9A3-208ENST00000469802 ATP10BO94823 1461 aa27.32■■□□□ 1.96
COL9A3-208ENST00000469802 COL17A1Q9UMD9 1497 aaPredicted RBP27.32■■□□□ 1.96
COL9A3-208ENST00000469802 EFCAB5A4FU69 1503 aa27.31■■□□□ 1.96
COL9A3-208ENST00000469802 FAM9AQ8IZU1 332 aaPredicted RBP27.3■■□□□ 1.96
COL9A3-208ENST00000469802 MAGI3Q5TCQ9 1506 aa27.3■■□□□ 1.96
COL9A3-208ENST00000469802 CHIC1Q5VXU3 224 aa27.28■■□□□ 1.96
COL9A3-208ENST00000469802 FHOD3Q2V2M9 1422 aa27.25■■□□□ 1.95
COL9A3-208ENST00000469802 NUP153P49790 1475 aaKnown RBP27.25■■□□□ 1.95
COL9A3-208ENST00000469802 ABCA9Q8IUA7 1624 aa27.24■■□□□ 1.95
COL9A3-208ENST00000469802 CD109Q6YHK3 1445 aa27.24■■□□□ 1.95
COL9A3-208ENST00000469802 KCNH8Q96L42 1107 aa27.17■■□□□ 1.94
COL9A3-208ENST00000469802 ARID3CA6NKF2 412 aa27.16■■□□□ 1.94
COL9A3-208ENST00000469802 RANGAP1P46060 587 aaPredicted RBP27.12■■□□□ 1.93
COL9A3-208ENST00000469802 KDM4FA0A1W2PPD8 638 aa27.11■■□□□ 1.93
COL9A3-208ENST00000469802 ARAP3Q8WWN8 1544 aa27.09■■□□□ 1.93
COL9A3-208ENST00000469802 ADGRL1O94910 1474 aa27.05■■□□□ 1.92
COL9A3-208ENST00000469802 ARHGAP35Q9NRY4 1499 aa27.05■■□□□ 1.92
COL9A3-208ENST00000469802 NEO1Q92859 1461 aa27■■□□□ 1.91
COL9A3-208ENST00000469802 UBTFP17480 764 aaKnown RBP27■■□□□ 1.91
COL9A3-208ENST00000469802 HECW1Q76N89 1606 aa27■■□□□ 1.91
COL9A3-208ENST00000469802 CDK13Q14004 1512 aaKnown RBP26.99■■□□□ 1.91
COL9A3-208ENST00000469802 PHLDB1Q86UU1 1377 aa26.98■■□□□ 1.91
COL9A3-208ENST00000469802 FMN1Q68DA7 1419 aa26.98■■□□□ 1.91
COL9A3-208ENST00000469802 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.97■■□□□ 1.91
COL9A3-208ENST00000469802 HNRNPUL2Q1KMD3 747 aaKnown RBP26.97■■□□□ 1.91
COL9A3-208ENST00000469802 TTC37Q6PGP7 1564 aa26.97■■□□□ 1.91
COL9A3-208ENST00000469802 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.96■■□□□ 1.91
COL9A3-208ENST00000469802 FRMPD1Q5SYB0 1578 aa26.96■■□□□ 1.91
COL9A3-208ENST00000469802 EHMT2Q96KQ7 1210 aa26.95■■□□□ 1.9
COL9A3-208ENST00000469802 LRRIQ1Q96JM4 1722 aa26.93■■□□□ 1.9
COL9A3-208ENST00000469802 CFAP74Q9C0B2 1584 aa26.92■■□□□ 1.9
COL9A3-208ENST00000469802 PLEKHD1A6NEE1 506 aa26.9■■□□□ 1.9
COL9A3-208ENST00000469802 RICTORQ6R327 1708 aa26.88■■□□□ 1.89
COL9A3-208ENST00000469802 FANCAO15360 1455 aa26.83■■□□□ 1.89
COL9A3-208ENST00000469802 MYO5CQ9NQX4 1742 aa26.82■■□□□ 1.88
COL9A3-208ENST00000469802 PCF11O94913 1555 aaKnown RBP26.81■■□□□ 1.88
COL9A3-208ENST00000469802 KIF14Q15058 1648 aa26.79■■□□□ 1.88
COL9A3-208ENST00000469802 ARHGEF40Q8TER5 1519 aa26.79■■□□□ 1.88
COL9A3-208ENST00000469802 RAPGEF3O95398 923 aa26.78■■□□□ 1.88
COL9A3-208ENST00000469802 AKNAQ7Z591 1439 aa26.78■■□□□ 1.88
COL9A3-208ENST00000469802 ZMYM4Q5VZL5 1548 aa26.76■■□□□ 1.87
COL9A3-208ENST00000469802 DENND4BO75064 1496 aaPredicted RBP26.76■■□□□ 1.87
COL9A3-208ENST00000469802 ADAMTSL3P82987 1691 aa26.74■■□□□ 1.87
COL9A3-208ENST00000469802 PLCH2O75038 1416 aa26.73■■□□□ 1.87
COL9A3-208ENST00000469802 TROQ12816 1431 aaPredicted RBP26.73■■□□□ 1.87
COL9A3-208ENST00000469802 CASKIN1Q8WXD9 1431 aa26.73■■□□□ 1.87
COL9A3-208ENST00000469802 BCORL1Q5H9F3 1711 aa26.7■■□□□ 1.87
COL9A3-208ENST00000469802 CCDC18Q5T9S5 1454 aa26.7■■□□□ 1.87
COL9A3-208ENST00000469802 ATP1B4Q9UN42 357 aaPredicted RBP26.68■■□□□ 1.86
COL9A3-208ENST00000469802 FYCO1Q9BQS8 1478 aa26.68■■□□□ 1.86
COL9A3-208ENST00000469802 CDK11AQ9UQ88 783 aaPredicted RBP26.67■■□□□ 1.86
COL9A3-208ENST00000469802 CLIP1P30622 1438 aa26.65■■□□□ 1.86
COL9A3-208ENST00000469802 POGZQ7Z3K3 1410 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms