RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 KIF21BO75037 1637 aa13.47□□□□□ -0.25
NPHP3-204ENST00000469232 AQRO60306 1485 aaKnown RBP eCLIP13.47□□□□□ -0.25
NPHP3-204ENST00000469232 GRIN2BQ13224 1484 aa13.47□□□□□ -0.25
NPHP3-204ENST00000469232 CUL7Q14999 1698 aa13.44□□□□□ -0.26
NPHP3-204ENST00000469232 PBRM1Q86U86 1689 aa13.44□□□□□ -0.26
NPHP3-204ENST00000469232 CACNB1Q02641 598 aaPredicted RBP13.43□□□□□ -0.26
NPHP3-204ENST00000469232 CARMIL1Q5VZK9 1371 aa13.42□□□□□ -0.26
NPHP3-204ENST00000469232 FAM9AQ8IZU1 332 aaPredicted RBP13.41□□□□□ -0.26
NPHP3-204ENST00000469232 MAGI1Q96QZ7 1491 aaPredicted RBP13.41□□□□□ -0.26
NPHP3-204ENST00000469232 ADAMTS12P58397 1594 aa13.4□□□□□ -0.27
NPHP3-204ENST00000469232 FHAD1B1AJZ9 1412 aa13.39□□□□□ -0.27
NPHP3-204ENST00000469232 RAPGEF2Q9Y4G8 1499 aa13.39□□□□□ -0.27
NPHP3-204ENST00000469232 GOLGA3Q08378 1498 aa13.38□□□□□ -0.27
NPHP3-204ENST00000469232 C1QBPQ07021 282 aaKnown RBP13.36□□□□□ -0.27
NPHP3-204ENST00000469232 SNAPC4Q5SXM2 1469 aa13.36□□□□□ -0.27
NPHP3-204ENST00000469232 SYNJ2O15056 1496 aa13.33□□□□□ -0.27
NPHP3-204ENST00000469232 TNIKQ9UKE5 1360 aa13.33□□□□□ -0.28
NPHP3-204ENST00000469232 LOC105371045A0A1W2PR82 267 aa13.31□□□□□ -0.28
NPHP3-204ENST00000469232 GRIN2AQ12879 1464 aa13.3□□□□□ -0.28
NPHP3-204ENST00000469232 SLC4A2P04920 1241 aa13.29□□□□□ -0.28
NPHP3-204ENST00000469232 NUP160Q12769 1436 aa13.28□□□□□ -0.28
NPHP3-204ENST00000469232 U3KPZ7 1027 aaPredicted RBP13.24□□□□□ -0.29
NPHP3-204ENST00000469232 SLC4A1APQ9BWU0 796 aaKnown RBP13.23□□□□□ -0.29
NPHP3-204ENST00000469232 KIAA0586Q9BVV6 1533 aa13.22□□□□□ -0.29
NPHP3-204ENST00000469232 CTTNBP2Q8WZ74 1663 aa13.22□□□□□ -0.29
NPHP3-204ENST00000469232 CEP170Q5SW79 1584 aa13.21□□□□□ -0.3
NPHP3-204ENST00000469232 CHMP7Q8WUX9 453 aaPredicted RBP13.21□□□□□ -0.3
NPHP3-204ENST00000469232 CHD1O14646 1710 aa13.2□□□□□ -0.3
NPHP3-204ENST00000469232 UBTFP17480 764 aaKnown RBP13.2□□□□□ -0.3
NPHP3-204ENST00000469232 CEP162Q5TB80 1403 aa13.18□□□□□ -0.3
NPHP3-204ENST00000469232 IQGAP2Q13576 1575 aa13.17□□□□□ -0.3
NPHP3-204ENST00000469232 UGGT2Q9NYU1 1516 aa13.17□□□□□ -0.3
NPHP3-204ENST00000469232 CLASP1Q7Z460 1538 aa13.15□□□□□ -0.3
NPHP3-204ENST00000469232 SAMD9Q5K651 1589 aa13.14□□□□□ -0.31
NPHP3-204ENST00000469232 CLIP1P30622 1438 aa13.13□□□□□ -0.31
NPHP3-204ENST00000469232 EFCAB5A4FU69 1503 aa13.13□□□□□ -0.31
NPHP3-204ENST00000469232 ARHGAP35Q9NRY4 1499 aa13.12□□□□□ -0.31
NPHP3-204ENST00000469232 SHROOM2Q13796 1616 aa13.12□□□□□ -0.31
NPHP3-204ENST00000469232 EHMT2Q96KQ7 1210 aa13.11□□□□□ -0.31
NPHP3-204ENST00000469232 FBLN2P98095 1184 aa13.1□□□□□ -0.31
NPHP3-204ENST00000469232 DISP1Q96F81 1524 aa13.08□□□□□ -0.32
NPHP3-204ENST00000469232 ARAP1Q96P48 1450 aa13.08□□□□□ -0.32
NPHP3-204ENST00000469232 JPH4Q96JJ6 628 aa13.06□□□□□ -0.32
NPHP3-204ENST00000469232 OSCARQ8IYS5 282 aa13.04□□□□□ -0.32
NPHP3-204ENST00000469232 KIAA0556O60303 1618 aa13.04□□□□□ -0.32
NPHP3-204ENST00000469232 VPS8Q8N3P4 1428 aa13.02□□□□□ -0.32
NPHP3-204ENST00000469232 CARMIL2Q6F5E8 1435 aa13□□□□□ -0.33
NPHP3-204ENST00000469232 PRG4Q92954 1404 aaPredicted RBP12.99□□□□□ -0.33
NPHP3-204ENST00000469232 FHOD3Q2V2M9 1422 aa12.99□□□□□ -0.33
NPHP3-204ENST00000469232 FMN1Q68DA7 1419 aa12.97□□□□□ -0.33
NPHP3-204ENST00000469232 SPINK5Q9NQ38 1064 aaPredicted RBP12.97□□□□□ -0.33
NPHP3-204ENST00000469232 CASKIN1Q8WXD9 1431 aa12.95□□□□□ -0.34
NPHP3-204ENST00000469232 ERCC6L2Q5T890 1561 aa12.94□□□□□ -0.34
NPHP3-204ENST00000469232 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.94□□□□□ -0.34
NPHP3-204ENST00000469232 HNRNPUL2Q1KMD3 747 aaKnown RBP12.94□□□□□ -0.34
NPHP3-204ENST00000469232 FOXD4L1Q9NU39 408 aa12.94□□□□□ -0.34
NPHP3-204ENST00000469232 FYCO1Q9BQS8 1478 aa12.93□□□□□ -0.34
NPHP3-204ENST00000469232 MAP3K1Q13233 1512 aa12.93□□□□□ -0.34
NPHP3-204ENST00000469232 MYCNP04198 464 aaPredicted RBP12.92□□□□□ -0.34
NPHP3-204ENST00000469232 CAPN15O75808 1086 aa12.91□□□□□ -0.34
NPHP3-204ENST00000469232 RANGAP1P46060 587 aaPredicted RBP12.91□□□□□ -0.34
NPHP3-204ENST00000469232 ABCA8O94911 1581 aa12.91□□□□□ -0.34
NPHP3-204ENST00000469232 P3H3Q8IVL6 736 aa12.91□□□□□ -0.34
NPHP3-204ENST00000469232 PCF11O94913 1555 aaKnown RBP12.91□□□□□ -0.34
NPHP3-204ENST00000469232 PTPRGP23470 1445 aa12.89□□□□□ -0.35
NPHP3-204ENST00000469232 SAMD1Q6SPF0 538 aaPredicted RBP12.88□□□□□ -0.35
NPHP3-204ENST00000469232 APLP2Q06481 763 aa12.88□□□□□ -0.35
NPHP3-204ENST00000469232 UHRF1BP1LA0JNW5 1464 aa12.87□□□□□ -0.35
NPHP3-204ENST00000469232 RAPGEF6Q8TEU7 1601 aa12.87□□□□□ -0.35
NPHP3-204ENST00000469232 NUP153P49790 1475 aaKnown RBP12.86□□□□□ -0.35
NPHP3-204ENST00000469232 ARHGEF11O15085 1522 aa12.86□□□□□ -0.35
NPHP3-204ENST00000469232 HECW1Q76N89 1606 aa12.85□□□□□ -0.35
NPHP3-204ENST00000469232 PLB1Q6P1J6 1458 aa12.85□□□□□ -0.35
NPHP3-204ENST00000469232 ZBTB22O15209 634 aa12.85□□□□□ -0.35
NPHP3-204ENST00000469232 UACAQ9BZF9 1416 aa12.84□□□□□ -0.35
NPHP3-204ENST00000469232 TIAM1Q13009 1591 aa12.84□□□□□ -0.35
NPHP3-204ENST00000469232 CFAP43Q8NDM7 1665 aa12.83□□□□□ -0.35
NPHP3-204ENST00000469232 LRRIQ1Q96JM4 1722 aa12.83□□□□□ -0.35
NPHP3-204ENST00000469232 CCDC18Q5T9S5 1454 aa12.83□□□□□ -0.36
NPHP3-204ENST00000469232 ABCC2Q92887 1545 aa12.83□□□□□ -0.36
NPHP3-204ENST00000469232 EPRSP07814 1512 aaKnown RBP12.82□□□□□ -0.36
NPHP3-204ENST00000469232 RIMBP3CA6NJZ7 1639 aa12.8□□□□□ -0.36
NPHP3-204ENST00000469232 RIMBP3BA6NNM3 1639 aa12.8□□□□□ -0.36
NPHP3-204ENST00000469232 RIMBP3Q9UFD9 1639 aa12.8□□□□□ -0.36
NPHP3-204ENST00000469232 KDM5BQ9UGL1 1544 aa12.8□□□□□ -0.36
NPHP3-204ENST00000469232 DSG3P32926 999 aa12.79□□□□□ -0.36
NPHP3-204ENST00000469232 ATP10BO94823 1461 aa12.78□□□□□ -0.36
NPHP3-204ENST00000469232 TRHP20396 242 aaPredicted RBP12.78□□□□□ -0.36
NPHP3-204ENST00000469232 LRRC9Q6ZRR7 1453 aa12.78□□□□□ -0.36
NPHP3-204ENST00000469232 ADCY10Q96PN6 1610 aa12.77□□□□□ -0.37
NPHP3-204ENST00000469232 ZNF219Q9P2Y4 722 aaPredicted RBP12.77□□□□□ -0.37
NPHP3-204ENST00000469232 CDK13Q14004 1512 aaKnown RBP12.75□□□□□ -0.37
NPHP3-204ENST00000469232 MAGI3Q5TCQ9 1506 aa12.75□□□□□ -0.37
NPHP3-204ENST00000469232 KANK4Q5T7N3 995 aaPredicted RBP12.74□□□□□ -0.37
NPHP3-204ENST00000469232 EHBP1L1Q8N3D4 1523 aa12.73□□□□□ -0.37
NPHP3-204ENST00000469232 TROQ12816 1431 aaPredicted RBP12.71□□□□□ -0.38
NPHP3-204ENST00000469232 ZCCHC11Q5TAX3 1644 aaKnown RBP12.71□□□□□ -0.38
NPHP3-204ENST00000469232 TTBK1Q5TCY1 1321 aaPredicted RBP12.68□□□□□ -0.38
NPHP3-204ENST00000469232 CDK11AQ9UQ88 783 aaPredicted RBP12.68□□□□□ -0.38
NPHP3-204ENST00000469232 MTUS2Q5JR59 1369 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms