RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 JPH4Q96JJ6 628 aa32.81■■■□□ 2.84
COL7A1-207ENST00000467985 PRG4Q92954 1404 aaPredicted RBP32.79■■■□□ 2.84
COL7A1-207ENST00000467985 CARMIL1Q5VZK9 1371 aa32.74■■■□□ 2.83
COL7A1-207ENST00000467985 KIAA0586Q9BVV6 1533 aa32.73■■■□□ 2.83
COL7A1-207ENST00000467985 RAPGEF2Q9Y4G8 1499 aa32.5■■■□□ 2.79
COL7A1-207ENST00000467985 IQGAP2Q13576 1575 aa32.47■■■□□ 2.79
COL7A1-207ENST00000467985 CARMIL2Q6F5E8 1435 aa32.43■■■□□ 2.78
COL7A1-207ENST00000467985 NPM1P06748 294 aaKnown RBP eCLIP32.39■■■□□ 2.78
COL7A1-207ENST00000467985 ADCY10Q96PN6 1610 aa32.36■■■□□ 2.77
COL7A1-207ENST00000467985 PTPRGP23470 1445 aa32.34■■■□□ 2.77
COL7A1-207ENST00000467985 TNIKQ9UKE5 1360 aa32.33■■■□□ 2.77
COL7A1-207ENST00000467985 MAPKBP1O60336 1514 aa32.29■■■□□ 2.76
COL7A1-207ENST00000467985 UGGT2Q9NYU1 1516 aa32.28■■■□□ 2.76
COL7A1-207ENST00000467985 PRXQ9BXM0 1461 aa32.26■■■□□ 2.75
COL7A1-207ENST00000467985 DISP1Q96F81 1524 aa32.26■■■□□ 2.75
COL7A1-207ENST00000467985 KIF13AQ9H1H9 1805 aa32.23■■■□□ 2.75
COL7A1-207ENST00000467985 CTTNBP2Q8WZ74 1663 aa32.22■■■□□ 2.75
COL7A1-207ENST00000467985 TTBK1Q5TCY1 1321 aaPredicted RBP32.2■■■□□ 2.74
COL7A1-207ENST00000467985 ABCC10Q5T3U5 1492 aa32.19■■■□□ 2.74
COL7A1-207ENST00000467985 KIAA0556O60303 1618 aa32.15■■■□□ 2.74
COL7A1-207ENST00000467985 UHRF1BP1LA0JNW5 1464 aa32.14■■■□□ 2.74
COL7A1-207ENST00000467985 FAM69CQ0P6D2 419 aa32.13■■■□□ 2.73
COL7A1-207ENST00000467985 ABCC2Q92887 1545 aa32.13■■■□□ 2.73
COL7A1-207ENST00000467985 UACAQ9BZF9 1416 aa32.12■■■□□ 2.73
COL7A1-207ENST00000467985 DIP2BQ9P265 1576 aa32.11■■■□□ 2.73
COL7A1-207ENST00000467985 GOLGA3Q08378 1498 aa32.1■■■□□ 2.73
COL7A1-207ENST00000467985 EEA1Q15075 1411 aa32.1■■■□□ 2.73
COL7A1-207ENST00000467985 CSRNP3Q8WYN3 585 aa32.1■■■□□ 2.73
COL7A1-207ENST00000467985 PLB1Q6P1J6 1458 aa31.99■■■□□ 2.71
COL7A1-207ENST00000467985 KDM5BQ9UGL1 1544 aa31.97■■■□□ 2.71
COL7A1-207ENST00000467985 ASXL2Q76L83 1435 aa31.96■■■□□ 2.71
COL7A1-207ENST00000467985 ZCCHC11Q5TAX3 1644 aaKnown RBP31.88■■■□□ 2.69
COL7A1-207ENST00000467985 FAM9AQ8IZU1 332 aaPredicted RBP31.87■■■□□ 2.69
COL7A1-207ENST00000467985 GLI2P10070 1586 aa31.86■■■□□ 2.69
COL7A1-207ENST00000467985 ABCA8O94911 1581 aa31.84■■■□□ 2.69
COL7A1-207ENST00000467985 TSPOAP1O95153 1857 aa31.82■■■□□ 2.69
COL7A1-207ENST00000467985 CHIC1Q5VXU3 224 aa31.81■■■□□ 2.68
COL7A1-207ENST00000467985 SAMD9Q5K651 1589 aa31.78■■■□□ 2.68
COL7A1-207ENST00000467985 EPRSP07814 1512 aaKnown RBP31.78■■■□□ 2.68
COL7A1-207ENST00000467985 KIF21BO75037 1637 aa31.78■■■□□ 2.68
COL7A1-207ENST00000467985 KDM6BO15054 1643 aa31.75■■■□□ 2.67
COL7A1-207ENST00000467985 WDR7Q9Y4E6 1490 aa31.73■■■□□ 2.67
COL7A1-207ENST00000467985 P3H3Q8IVL6 736 aa31.73■■■□□ 2.67
COL7A1-207ENST00000467985 MAP3K4Q9Y6R4 1608 aa31.67■■■□□ 2.66
COL7A1-207ENST00000467985 PPRC1Q5VV67 1664 aaKnown RBP31.67■■■□□ 2.66
COL7A1-207ENST00000467985 TEX14Q8IWB6 1497 aa31.62■■■□□ 2.65
COL7A1-207ENST00000467985 AEBP2Q6ZN18 517 aaPredicted RBP31.6■■■□□ 2.65
COL7A1-207ENST00000467985 RAPGEF6Q8TEU7 1601 aa31.58■■■□□ 2.65
COL7A1-207ENST00000467985 RANGAP1P46060 587 aaPredicted RBP31.58■■■□□ 2.65
COL7A1-207ENST00000467985 EFCAB5A4FU69 1503 aa31.58■■■□□ 2.65
COL7A1-207ENST00000467985 ATP10BO94823 1461 aa31.56■■■□□ 2.64
COL7A1-207ENST00000467985 KCNH8Q96L42 1107 aa31.54■■■□□ 2.64
COL7A1-207ENST00000467985 FHOD3Q2V2M9 1422 aa31.53■■■□□ 2.64
COL7A1-207ENST00000467985 CFAP43Q8NDM7 1665 aa31.53■■■□□ 2.64
COL7A1-207ENST00000467985 UBTFP17480 764 aaKnown RBP31.5■■■□□ 2.63
COL7A1-207ENST00000467985 CD109Q6YHK3 1445 aa31.49■■■□□ 2.63
COL7A1-207ENST00000467985 ARID3CA6NKF2 412 aa31.49■■■□□ 2.63
COL7A1-207ENST00000467985 MAGI3Q5TCQ9 1506 aa31.47■■■□□ 2.63
COL7A1-207ENST00000467985 NUP153P49790 1475 aaKnown RBP31.45■■■□□ 2.62
COL7A1-207ENST00000467985 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.41■■■□□ 2.62
COL7A1-207ENST00000467985 HNRNPUL2Q1KMD3 747 aaKnown RBP31.41■■■□□ 2.62
COL7A1-207ENST00000467985 EHMT2Q96KQ7 1210 aa31.41■■■□□ 2.62
COL7A1-207ENST00000467985 COL17A1Q9UMD9 1497 aaPredicted RBP31.4■■■□□ 2.62
COL7A1-207ENST00000467985 ABCA9Q8IUA7 1624 aa31.35■■■□□ 2.61
COL7A1-207ENST00000467985 FMN1Q68DA7 1419 aa31.3■■■□□ 2.6
COL7A1-207ENST00000467985 ARHGAP35Q9NRY4 1499 aa31.28■■■□□ 2.6
COL7A1-207ENST00000467985 PLEKHD1A6NEE1 506 aa31.28■■■□□ 2.6
COL7A1-207ENST00000467985 PHLDB1Q86UU1 1377 aa31.26■■■□□ 2.59
COL7A1-207ENST00000467985 ARAP3Q8WWN8 1544 aa31.22■■■□□ 2.59
COL7A1-207ENST00000467985 KDM4FA0A1W2PPD8 638 aa31.19■■■□□ 2.58
COL7A1-207ENST00000467985 HECW1Q76N89 1606 aa31.19■■■□□ 2.58
COL7A1-207ENST00000467985 NEO1Q92859 1461 aa31.17■■■□□ 2.58
COL7A1-207ENST00000467985 CDK13Q14004 1512 aaKnown RBP31.14■■■□□ 2.58
COL7A1-207ENST00000467985 ATP1B4Q9UN42 357 aaPredicted RBP31.12■■■□□ 2.57
COL7A1-207ENST00000467985 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.08■■■□□ 2.57
COL7A1-207ENST00000467985 ADGRL1O94910 1474 aa31.08■■■□□ 2.57
COL7A1-207ENST00000467985 CDK11AQ9UQ88 783 aaPredicted RBP31.08■■■□□ 2.57
COL7A1-207ENST00000467985 CFAP74Q9C0B2 1584 aa31.04■■■□□ 2.56
COL7A1-207ENST00000467985 TTC37Q6PGP7 1564 aa31.03■■■□□ 2.56
COL7A1-207ENST00000467985 FANCAO15360 1455 aa31■■■□□ 2.55
COL7A1-207ENST00000467985 RAPGEF3O95398 923 aa30.98■■■□□ 2.55
COL7A1-207ENST00000467985 CASKIN1Q8WXD9 1431 aa30.98■■■□□ 2.55
COL7A1-207ENST00000467985 AKNAQ7Z591 1439 aa30.97■■■□□ 2.55
COL7A1-207ENST00000467985 CLIP1P30622 1438 aa30.96■■■□□ 2.55
COL7A1-207ENST00000467985 DENND4BO75064 1496 aaPredicted RBP30.94■■■□□ 2.54
COL7A1-207ENST00000467985 TROQ12816 1431 aaPredicted RBP30.93■■■□□ 2.54
COL7A1-207ENST00000467985 CCDC18Q5T9S5 1454 aa30.93■■■□□ 2.54
COL7A1-207ENST00000467985 LRRIQ1Q96JM4 1722 aa30.93■■■□□ 2.54
COL7A1-207ENST00000467985 PCF11O94913 1555 aaKnown RBP30.92■■■□□ 2.54
COL7A1-207ENST00000467985 FRMPD1Q5SYB0 1578 aa30.92■■■□□ 2.54
COL7A1-207ENST00000467985 PLCH2O75038 1416 aa30.92■■■□□ 2.54
COL7A1-207ENST00000467985 KIF14Q15058 1648 aa30.91■■■□□ 2.54
COL7A1-207ENST00000467985 FYCO1Q9BQS8 1478 aa30.89■■■□□ 2.53
COL7A1-207ENST00000467985 MYO5CQ9NQX4 1742 aa30.88■■■□□ 2.53
COL7A1-207ENST00000467985 RICTORQ6R327 1708 aa30.87■■■□□ 2.53
COL7A1-207ENST00000467985 EFCAB2Q5VUJ9 269 aa30.83■■■□□ 2.53
COL7A1-207ENST00000467985 ZMYM4Q5VZL5 1548 aa30.79■■■□□ 2.52
COL7A1-207ENST00000467985 ARHGEF40Q8TER5 1519 aa30.78■■■□□ 2.52
COL7A1-207ENST00000467985 SCAPERQ9BY12 1400 aa30.77■■■□□ 2.52
COL7A1-207ENST00000467985 MAGI2Q86UL8 1455 aa30.76■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 335 ms