RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 CUL7Q14999 1698 aa12.49□□□□□ -0.41
PTPRF-210ENST00000463041 CARMIL1Q5VZK9 1371 aa12.49□□□□□ -0.41
PTPRF-210ENST00000463041 KIAA0586Q9BVV6 1533 aa12.47□□□□□ -0.41
PTPRF-210ENST00000463041 RUSC2Q8N2Y8 1516 aa12.43□□□□□ -0.42
PTPRF-210ENST00000463041 NPM1P06748 294 aaKnown RBP eCLIP12.42□□□□□ -0.42
PTPRF-210ENST00000463041 RAPGEF2Q9Y4G8 1499 aa12.37□□□□□ -0.43
PTPRF-210ENST00000463041 CARMIL2Q6F5E8 1435 aa12.37□□□□□ -0.43
PTPRF-210ENST00000463041 PTPRGP23470 1445 aa12.36□□□□□ -0.43
PTPRF-210ENST00000463041 TNIKQ9UKE5 1360 aa12.33□□□□□ -0.44
PTPRF-210ENST00000463041 IQGAP2Q13576 1575 aa12.32□□□□□ -0.44
PTPRF-210ENST00000463041 FAM69CQ0P6D2 419 aa12.3□□□□□ -0.44
PTPRF-210ENST00000463041 TTBK1Q5TCY1 1321 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-210ENST00000463041 ADCY10Q96PN6 1610 aa12.29□□□□□ -0.44
PTPRF-210ENST00000463041 KIF13AQ9H1H9 1805 aa12.29□□□□□ -0.44
PTPRF-210ENST00000463041 MAPKBP1O60336 1514 aa12.28□□□□□ -0.44
PTPRF-210ENST00000463041 ABCC10Q5T3U5 1492 aa12.27□□□□□ -0.44
PTPRF-210ENST00000463041 UGGT2Q9NYU1 1516 aa12.27□□□□□ -0.44
PTPRF-210ENST00000463041 CSRNP3Q8WYN3 585 aa12.27□□□□□ -0.45
PTPRF-210ENST00000463041 DISP1Q96F81 1524 aa12.27□□□□□ -0.45
PTPRF-210ENST00000463041 PRXQ9BXM0 1461 aa12.26□□□□□ -0.45
PTPRF-210ENST00000463041 UHRF1BP1LA0JNW5 1464 aa12.24□□□□□ -0.45
PTPRF-210ENST00000463041 UACAQ9BZF9 1416 aa12.24□□□□□ -0.45
PTPRF-210ENST00000463041 ABCC2Q92887 1545 aa12.23□□□□□ -0.45
PTPRF-210ENST00000463041 FAM9AQ8IZU1 332 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-210ENST00000463041 CTTNBP2Q8WZ74 1663 aa12.22□□□□□ -0.45
PTPRF-210ENST00000463041 GOLGA3Q08378 1498 aa12.21□□□□□ -0.45
PTPRF-210ENST00000463041 EEA1Q15075 1411 aa12.2□□□□□ -0.46
PTPRF-210ENST00000463041 DIP2BQ9P265 1576 aa12.2□□□□□ -0.46
PTPRF-210ENST00000463041 PLB1Q6P1J6 1458 aa12.2□□□□□ -0.46
PTPRF-210ENST00000463041 KIAA0556O60303 1618 aa12.19□□□□□ -0.46
PTPRF-210ENST00000463041 ASXL2Q76L83 1435 aa12.18□□□□□ -0.46
PTPRF-210ENST00000463041 KDM5BQ9UGL1 1544 aa12.17□□□□□ -0.46
PTPRF-210ENST00000463041 TSPOAP1O95153 1857 aa12.17□□□□□ -0.46
PTPRF-210ENST00000463041 AEBP2Q6ZN18 517 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-210ENST00000463041 GLI2P10070 1586 aa12.13□□□□□ -0.47
PTPRF-210ENST00000463041 CHIC1Q5VXU3 224 aa12.13□□□□□ -0.47
PTPRF-210ENST00000463041 P3H3Q8IVL6 736 aa12.13□□□□□ -0.47
PTPRF-210ENST00000463041 ZCCHC11Q5TAX3 1644 aaKnown RBP12.11□□□□□ -0.47
PTPRF-210ENST00000463041 ABCA8O94911 1581 aa12.1□□□□□ -0.47
PTPRF-210ENST00000463041 EPRSP07814 1512 aaKnown RBP12.1□□□□□ -0.47
PTPRF-210ENST00000463041 KCNH8Q96L42 1107 aa12.08□□□□□ -0.48
PTPRF-210ENST00000463041 KDM6BO15054 1643 aa12.08□□□□□ -0.48
PTPRF-210ENST00000463041 WDR7Q9Y4E6 1490 aa12.07□□□□□ -0.48
PTPRF-210ENST00000463041 RANGAP1P46060 587 aaPredicted RBP12.05□□□□□ -0.48
PTPRF-210ENST00000463041 SAMD9Q5K651 1589 aa12.05□□□□□ -0.48
PTPRF-210ENST00000463041 MAP3K4Q9Y6R4 1608 aa12.04□□□□□ -0.48
PTPRF-210ENST00000463041 PPRC1Q5VV67 1664 aaKnown RBP12.04□□□□□ -0.48
PTPRF-210ENST00000463041 ATP10BO94823 1461 aa12.04□□□□□ -0.48
PTPRF-210ENST00000463041 TEX14Q8IWB6 1497 aa12.04□□□□□ -0.48
PTPRF-210ENST00000463041 KIF21BO75037 1637 aa12.04□□□□□ -0.48
PTPRF-210ENST00000463041 UBTFP17480 764 aaKnown RBP12.03□□□□□ -0.48
PTPRF-210ENST00000463041 CD109Q6YHK3 1445 aa12.03□□□□□ -0.48
PTPRF-210ENST00000463041 ARID3CA6NKF2 412 aa12.01□□□□□ -0.49
PTPRF-210ENST00000463041 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-210ENST00000463041 HNRNPUL2Q1KMD3 747 aaKnown RBP12.01□□□□□ -0.49
PTPRF-210ENST00000463041 CFAP43Q8NDM7 1665 aa12□□□□□ -0.49
PTPRF-210ENST00000463041 MAGI3Q5TCQ9 1506 aa11.99□□□□□ -0.49
PTPRF-210ENST00000463041 RAPGEF6Q8TEU7 1601 aa11.99□□□□□ -0.49
PTPRF-210ENST00000463041 COL17A1Q9UMD9 1497 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-210ENST00000463041 FHOD3Q2V2M9 1422 aa11.98□□□□□ -0.49
PTPRF-210ENST00000463041 PLEKHD1A6NEE1 506 aa11.98□□□□□ -0.49
PTPRF-210ENST00000463041 EFCAB5A4FU69 1503 aa11.97□□□□□ -0.49
PTPRF-210ENST00000463041 KDM4FA0A1W2PPD8 638 aa11.97□□□□□ -0.49
PTPRF-210ENST00000463041 EHMT2Q96KQ7 1210 aa11.97□□□□□ -0.49
PTPRF-210ENST00000463041 PHLDB1Q86UU1 1377 aa11.95□□□□□ -0.5
PTPRF-210ENST00000463041 NUP153P49790 1475 aaKnown RBP11.94□□□□□ -0.5
PTPRF-210ENST00000463041 ABCA9Q8IUA7 1624 aa11.92□□□□□ -0.5
PTPRF-210ENST00000463041 ARAP3Q8WWN8 1544 aa11.91□□□□□ -0.5
PTPRF-210ENST00000463041 FMN1Q68DA7 1419 aa11.9□□□□□ -0.5
PTPRF-210ENST00000463041 ATP1B4Q9UN42 357 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-210ENST00000463041 CDK11AQ9UQ88 783 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-210ENST00000463041 ARHGAP35Q9NRY4 1499 aa11.89□□□□□ -0.51
PTPRF-210ENST00000463041 NEO1Q92859 1461 aa11.87□□□□□ -0.51
PTPRF-210ENST00000463041 RAPGEF3O95398 923 aa11.85□□□□□ -0.51
PTPRF-210ENST00000463041 ADGRL1O94910 1474 aa11.83□□□□□ -0.52
PTPRF-210ENST00000463041 CDK13Q14004 1512 aaKnown RBP11.81□□□□□ -0.52
PTPRF-210ENST00000463041 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.81□□□□□ -0.52
PTPRF-210ENST00000463041 AKNAQ7Z591 1439 aa11.81□□□□□ -0.52
PTPRF-210ENST00000463041 HECW1Q76N89 1606 aa11.81□□□□□ -0.52
PTPRF-210ENST00000463041 FANCAO15360 1455 aa11.8□□□□□ -0.52
PTPRF-210ENST00000463041 PLCH2O75038 1416 aa11.79□□□□□ -0.52
PTPRF-210ENST00000463041 DENND4BO75064 1496 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-210ENST00000463041 EFCAB2Q5VUJ9 269 aa11.79□□□□□ -0.52
PTPRF-210ENST00000463041 CFAP74Q9C0B2 1584 aa11.78□□□□□ -0.52
PTPRF-210ENST00000463041 CASKIN1Q8WXD9 1431 aa11.77□□□□□ -0.52
PTPRF-210ENST00000463041 TROQ12816 1431 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-210ENST00000463041 TTC37Q6PGP7 1564 aa11.76□□□□□ -0.53
PTPRF-210ENST00000463041 CLIP1P30622 1438 aa11.76□□□□□ -0.53
PTPRF-210ENST00000463041 RICTORQ6R327 1708 aa11.74□□□□□ -0.53
PTPRF-210ENST00000463041 ARID4BQ4LE39 1312 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-210ENST00000463041 SCAPERQ9BY12 1400 aa11.74□□□□□ -0.53
PTPRF-210ENST00000463041 CCDC18Q5T9S5 1454 aa11.74□□□□□ -0.53
PTPRF-210ENST00000463041 LRRIQ1Q96JM4 1722 aa11.74□□□□□ -0.53
PTPRF-210ENST00000463041 FRMPD1Q5SYB0 1578 aa11.73□□□□□ -0.53
PTPRF-210ENST00000463041 MYO5CQ9NQX4 1742 aa11.73□□□□□ -0.53
PTPRF-210ENST00000463041 MAGI2Q86UL8 1455 aa11.72□□□□□ -0.53
PTPRF-210ENST00000463041 KIF14Q15058 1648 aa11.71□□□□□ -0.53
PTPRF-210ENST00000463041 FYCO1Q9BQS8 1478 aa11.7□□□□□ -0.54
PTPRF-210ENST00000463041 ADAMTSL3P82987 1691 aa11.69□□□□□ -0.54
PTPRF-210ENST00000463041 PCF11O94913 1555 aaKnown RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms