RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 NISCHQ9Y2I1 1504 aa17.92■□□□□ 0.46
PTPRF-210ENST00000463041 CCDC180Q9P1Z9 1646 aa16■□□□□ 0.15
PTPRF-210ENST00000463041 ABCC9O60706 1549 aa15.86■□□□□ 0.13
PTPRF-210ENST00000463041 RB1CC1Q8TDY2 1594 aa15.19■□□□□ 0.02
PTPRF-210ENST00000463041 DCAF8L2P0C7V8 631 aa15.14■□□□□ 0.01
PTPRF-210ENST00000463041 NACADO15069 1562 aa15.13■□□□□ 0.01
PTPRF-210ENST00000463041 MYO15BQ96JP2 1530 aa14.98□□□□□ -0.01
PTPRF-210ENST00000463041 ZCCHC6Q5VYS8 1495 aaKnown RBP14.84□□□□□ -0.03
PTPRF-210ENST00000463041 PABPN1Q86U42 306 aaKnown RBP eCLIP14.84□□□□□ -0.03
PTPRF-210ENST00000463041 DCAF1Q9Y4B6 1507 aa14.82□□□□□ -0.04
PTPRF-210ENST00000463041 DNAJC5BQ9UF47 199 aa14.82□□□□□ -0.04
PTPRF-210ENST00000463041 UNC13AQ9UPW8 1703 aa14.82□□□□□ -0.04
PTPRF-210ENST00000463041 BICRAQ9NZM4 1560 aa14.71□□□□□ -0.05
PTPRF-210ENST00000463041 SHROOM4Q9ULL8 1493 aa14.56□□□□□ -0.08
PTPRF-210ENST00000463041 SCRIBQ14160 1630 aa14.55□□□□□ -0.08
PTPRF-210ENST00000463041 CC2D2AQ9P2K1 1620 aa14.34□□□□□ -0.11
PTPRF-210ENST00000463041 EIF4G1Q04637 1599 aaKnown RBP14.34□□□□□ -0.11
PTPRF-210ENST00000463041 CECR2Q9BXF3 1484 aa14.3□□□□□ -0.12
PTPRF-210ENST00000463041 NCAPD3P42695 1498 aa13.98□□□□□ -0.17
PTPRF-210ENST00000463041 ATAD2BQ9ULI0 1458 aa13.93□□□□□ -0.18
PTPRF-210ENST00000463041 SMARCA4P51532 1647 aa13.92□□□□□ -0.18
PTPRF-210ENST00000463041 SMARCA2P51531 1590 aa13.9□□□□□ -0.18
PTPRF-210ENST00000463041 BAZ1AQ9NRL2 1556 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-210ENST00000463041 HMGXB3Q12766 1538 aa13.84□□□□□ -0.19
PTPRF-210ENST00000463041 PEG3Q9GZU2 1588 aa13.8□□□□□ -0.2
PTPRF-210ENST00000463041 BAZ1BQ9UIG0 1483 aaKnown RBP13.79□□□□□ -0.2
PTPRF-210ENST00000463041 MROH2BQ7Z745 1585 aa13.79□□□□□ -0.2
PTPRF-210ENST00000463041 ERCC6Q03468 1493 aa13.7□□□□□ -0.22
PTPRF-210ENST00000463041 NESP48681 1621 aa13.66□□□□□ -0.22
PTPRF-210ENST00000463041 CUX2O14529 1486 aa13.64□□□□□ -0.23
PTPRF-210ENST00000463041 WIZO95785 1651 aa13.63□□□□□ -0.23
PTPRF-210ENST00000463041 LAMC3Q9Y6N6 1575 aa13.62□□□□□ -0.23
PTPRF-210ENST00000463041 RSF1Q96T23 1441 aaPredicted RBP13.58□□□□□ -0.24
PTPRF-210ENST00000463041 CADPSQ9ULU8 1353 aa13.58□□□□□ -0.24
PTPRF-210ENST00000463041 PDS5BQ9NTI5 1447 aa13.57□□□□□ -0.24
PTPRF-210ENST00000463041 DNAJC5Q9H3Z4 198 aa13.55□□□□□ -0.24
PTPRF-210ENST00000463041 KIF21AQ7Z4S6 1674 aa13.47□□□□□ -0.25
PTPRF-210ENST00000463041 THOC2Q8NI27 1593 aaKnown RBP13.46□□□□□ -0.25
PTPRF-210ENST00000463041 TOP2AP11388 1531 aaKnown RBP13.46□□□□□ -0.25
PTPRF-210ENST00000463041 CFTRP13569 1480 aa13.42□□□□□ -0.26
PTPRF-210ENST00000463041 MRC2Q9UBG0 1479 aa13.39□□□□□ -0.27
PTPRF-210ENST00000463041 FANCD2Q9BXW9 1451 aa13.37□□□□□ -0.27
PTPRF-210ENST00000463041 CEP164Q9UPV0 1460 aa13.37□□□□□ -0.27
PTPRF-210ENST00000463041 CCDC88BA6NC98 1476 aa13.35□□□□□ -0.27
PTPRF-210ENST00000463041 WDR62O43379 1518 aa13.34□□□□□ -0.27
PTPRF-210ENST00000463041 PRDM2Q13029 1718 aa13.27□□□□□ -0.29
PTPRF-210ENST00000463041 URB2Q14146 1524 aaKnown RBP13.23□□□□□ -0.29
PTPRF-210ENST00000463041 ABCC8Q09428 1581 aa13.18□□□□□ -0.3
PTPRF-210ENST00000463041 TOPBP1Q92547 1522 aa13.13□□□□□ -0.31
PTPRF-210ENST00000463041 OSCARQ8IYS5 282 aa13.13□□□□□ -0.31
PTPRF-210ENST00000463041 SUPT5HO00267 1087 aaKnown RBP13.12□□□□□ -0.31
PTPRF-210ENST00000463041 IFT140Q96RY7 1462 aa13.11□□□□□ -0.31
PTPRF-210ENST00000463041 DNMBPQ6XZF7 1577 aa13.09□□□□□ -0.31
PTPRF-210ENST00000463041 ZNF608Q9ULD9 1512 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-210ENST00000463041 POLA1P09884 1462 aaPredicted RBP13□□□□□ -0.33
PTPRF-210ENST00000463041 SOGA1O94964 1423 aa13□□□□□ -0.33
PTPRF-210ENST00000463041 TARBP1Q13395 1621 aaKnown RBP12.99□□□□□ -0.33
PTPRF-210ENST00000463041 AQRO60306 1485 aaKnown RBP eCLIP12.98□□□□□ -0.33
PTPRF-210ENST00000463041 TRIM41Q8WV44 630 aa12.96□□□□□ -0.33
PTPRF-210ENST00000463041 RAD54L2Q9Y4B4 1467 aa12.96□□□□□ -0.34
PTPRF-210ENST00000463041 EIF4G3O43432 1585 aaKnown RBP12.95□□□□□ -0.34
PTPRF-210ENST00000463041 CUX1P39880 1505 aa12.94□□□□□ -0.34
PTPRF-210ENST00000463041 TDRD9Q8NDG6 1382 aaKnown RBP12.94□□□□□ -0.34
PTPRF-210ENST00000463041 FGD5Q6ZNL6 1462 aa12.93□□□□□ -0.34
PTPRF-210ENST00000463041 FBLN2P98095 1184 aa12.91□□□□□ -0.34
PTPRF-210ENST00000463041 WDR97A6NE52 1622 aa12.9□□□□□ -0.34
PTPRF-210ENST00000463041 CHMP7Q8WUX9 453 aaPredicted RBP12.86□□□□□ -0.35
PTPRF-210ENST00000463041 CHD1O14646 1710 aa12.85□□□□□ -0.35
PTPRF-210ENST00000463041 GRIN2BQ13224 1484 aa12.85□□□□□ -0.35
PTPRF-210ENST00000463041 RIMBP3CA6NJZ7 1639 aa12.83□□□□□ -0.36
PTPRF-210ENST00000463041 RIMBP3BA6NNM3 1639 aa12.83□□□□□ -0.36
PTPRF-210ENST00000463041 RIMBP3Q9UFD9 1639 aa12.83□□□□□ -0.36
PTPRF-210ENST00000463041 WRNQ14191 1432 aaPredicted RBP eCLIP12.82□□□□□ -0.36
PTPRF-210ENST00000463041 GAPVD1Q14C86 1478 aa12.82□□□□□ -0.36
PTPRF-210ENST00000463041 SNAPC4Q5SXM2 1469 aa12.82□□□□□ -0.36
PTPRF-210ENST00000463041 MAGI1Q96QZ7 1491 aaPredicted RBP12.82□□□□□ -0.36
PTPRF-210ENST00000463041 ABCA10Q8WWZ4 1543 aa12.82□□□□□ -0.36
PTPRF-210ENST00000463041 ARHGEF11O15085 1522 aa12.8□□□□□ -0.36
PTPRF-210ENST00000463041 TOP2BQ02880 1626 aa12.78□□□□□ -0.36
PTPRF-210ENST00000463041 CYB5RLQ6IPT4 315 aa12.78□□□□□ -0.36
PTPRF-210ENST00000463041 SYNJ2O15056 1496 aa12.78□□□□□ -0.36
PTPRF-210ENST00000463041 BIVM-ERCC5R4GMW8 1640 aa12.77□□□□□ -0.36
PTPRF-210ENST00000463041 PBRM1Q86U86 1689 aa12.75□□□□□ -0.37
PTPRF-210ENST00000463041 ABCA5Q8WWZ7 1642 aa12.74□□□□□ -0.37
PTPRF-210ENST00000463041 SYNJ1O43426 1573 aa12.74□□□□□ -0.37
PTPRF-210ENST00000463041 CLASP1Q7Z460 1538 aa12.71□□□□□ -0.38
PTPRF-210ENST00000463041 ARAP1Q96P48 1450 aa12.68□□□□□ -0.38
PTPRF-210ENST00000463041 FHAD1B1AJZ9 1412 aa12.67□□□□□ -0.38
PTPRF-210ENST00000463041 ERICH3Q5RHP9 1530 aa12.67□□□□□ -0.38
PTPRF-210ENST00000463041 GRIN2AQ12879 1464 aa12.65□□□□□ -0.38
PTPRF-210ENST00000463041 ADAMTS12P58397 1594 aa12.63□□□□□ -0.39
PTPRF-210ENST00000463041 NUP160Q12769 1436 aa12.62□□□□□ -0.39
PTPRF-210ENST00000463041 TRHP20396 242 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-210ENST00000463041 IGF1RP08069 1367 aa12.58□□□□□ -0.4
PTPRF-210ENST00000463041 CEP170Q5SW79 1584 aa12.58□□□□□ -0.4
PTPRF-210ENST00000463041 JPH4Q96JJ6 628 aa12.58□□□□□ -0.4
PTPRF-210ENST00000463041 KIF27Q86VH2 1401 aa12.57□□□□□ -0.4
PTPRF-210ENST00000463041 SHROOM2Q13796 1616 aa12.52□□□□□ -0.4
PTPRF-210ENST00000463041 ERCC6L2Q5T890 1561 aa12.51□□□□□ -0.41
PTPRF-210ENST00000463041 PRG4Q92954 1404 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 180.1 ms