RNA–Protein interactions for RNA: ENST00000461654.1

TMEM39A-203, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 588 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-203ENST00000461654 PRG4Q92954 1404 aaPredicted RBP25.04■■□□□ 1.6
TMEM39A-203ENST00000461654 RUSC2Q8N2Y8 1516 aa25.04■■□□□ 1.6
TMEM39A-203ENST00000461654 CARMIL1Q5VZK9 1371 aa25.04■■□□□ 1.6
TMEM39A-203ENST00000461654 TRHP20396 242 aaPredicted RBP25.03■■□□□ 1.6
TMEM39A-203ENST00000461654 KIAA0586Q9BVV6 1533 aa25.02■■□□□ 1.6
TMEM39A-203ENST00000461654 FAM9AQ8IZU1 332 aaPredicted RBP24.89■■□□□ 1.58
TMEM39A-203ENST00000461654 EEA1Q15075 1411 aa24.88■■□□□ 1.57
TMEM39A-203ENST00000461654 RAPGEF2Q9Y4G8 1499 aa24.83■■□□□ 1.57
TMEM39A-203ENST00000461654 IQGAP2Q13576 1575 aa24.76■■□□□ 1.55
TMEM39A-203ENST00000461654 CARMIL2Q6F5E8 1435 aa24.75■■□□□ 1.55
TMEM39A-203ENST00000461654 CSRNP3Q8WYN3 585 aa24.73■■□□□ 1.55
TMEM39A-203ENST00000461654 PTPRGP23470 1445 aa24.71■■□□□ 1.55
TMEM39A-203ENST00000461654 NPM1P06748 294 aaKnown RBP eCLIP24.71■■□□□ 1.55
TMEM39A-203ENST00000461654 TNIKQ9UKE5 1360 aa24.7■■□□□ 1.55
TMEM39A-203ENST00000461654 PRXQ9BXM0 1461 aa24.68■■□□□ 1.54
TMEM39A-203ENST00000461654 ADCY10Q96PN6 1610 aa24.68■■□□□ 1.54
TMEM39A-203ENST00000461654 UGGT2Q9NYU1 1516 aa24.66■■□□□ 1.54
TMEM39A-203ENST00000461654 DISP1Q96F81 1524 aa24.66■■□□□ 1.54
TMEM39A-203ENST00000461654 MAPKBP1O60336 1514 aa24.65■■□□□ 1.54
TMEM39A-203ENST00000461654 ABCC10Q5T3U5 1492 aa24.59■■□□□ 1.53
TMEM39A-203ENST00000461654 LOC105371045A0A1W2PR82 267 aa24.57■■□□□ 1.52
TMEM39A-203ENST00000461654 UHRF1BP1LA0JNW5 1464 aa24.57■■□□□ 1.52
TMEM39A-203ENST00000461654 KIF13AQ9H1H9 1805 aa24.55■■□□□ 1.52
TMEM39A-203ENST00000461654 UACAQ9BZF9 1416 aa24.54■■□□□ 1.52
TMEM39A-203ENST00000461654 FAM69CQ0P6D2 419 aa24.54■■□□□ 1.52
TMEM39A-203ENST00000461654 TTBK1Q5TCY1 1321 aaPredicted RBP24.54■■□□□ 1.52
TMEM39A-203ENST00000461654 ABCC2Q92887 1545 aa24.53■■□□□ 1.52
TMEM39A-203ENST00000461654 KIAA0556O60303 1618 aa24.53■■□□□ 1.52
TMEM39A-203ENST00000461654 CTTNBP2Q8WZ74 1663 aa24.53■■□□□ 1.52
TMEM39A-203ENST00000461654 EHMT2Q96KQ7 1210 aa24.51■■□□□ 1.51
TMEM39A-203ENST00000461654 GOLGA3Q08378 1498 aa24.5■■□□□ 1.51
TMEM39A-203ENST00000461654 KIF21BO75037 1637 aa24.49■■□□□ 1.51
TMEM39A-203ENST00000461654 DIP2BQ9P265 1576 aa24.48■■□□□ 1.51
TMEM39A-203ENST00000461654 KDM5BQ9UGL1 1544 aa24.44■■□□□ 1.5
TMEM39A-203ENST00000461654 UBTFP17480 764 aaKnown RBP24.42■■□□□ 1.5
TMEM39A-203ENST00000461654 PLB1Q6P1J6 1458 aa24.42■■□□□ 1.5
TMEM39A-203ENST00000461654 ASXL2Q76L83 1435 aa24.41■■□□□ 1.5
TMEM39A-203ENST00000461654 GLI2P10070 1586 aa24.33■■□□□ 1.49
TMEM39A-203ENST00000461654 ABCA8O94911 1581 aa24.32■■□□□ 1.48
TMEM39A-203ENST00000461654 ZCCHC11Q5TAX3 1644 aaKnown RBP24.3■■□□□ 1.48
TMEM39A-203ENST00000461654 EPRSP07814 1512 aaKnown RBP24.26■■□□□ 1.47
TMEM39A-203ENST00000461654 SAMD9Q5K651 1589 aa24.25■■□□□ 1.47
TMEM39A-203ENST00000461654 P3H3Q8IVL6 736 aa24.24■■□□□ 1.47
TMEM39A-203ENST00000461654 WDR7Q9Y4E6 1490 aa24.22■■□□□ 1.47
TMEM39A-203ENST00000461654 TSPOAP1O95153 1857 aa24.2■■□□□ 1.46
TMEM39A-203ENST00000461654 KDM6BO15054 1643 aa24.17■■□□□ 1.46
TMEM39A-203ENST00000461654 MAP3K4Q9Y6R4 1608 aa24.17■■□□□ 1.46
TMEM39A-203ENST00000461654 PPRC1Q5VV67 1664 aaKnown RBP24.16■■□□□ 1.46
TMEM39A-203ENST00000461654 CEP162Q5TB80 1403 aa24.14■■□□□ 1.45
TMEM39A-203ENST00000461654 ATP10BO94823 1461 aa24.13■■□□□ 1.45
TMEM39A-203ENST00000461654 TEX14Q8IWB6 1497 aa24.11■■□□□ 1.45
TMEM39A-203ENST00000461654 EFCAB5A4FU69 1503 aa24.09■■□□□ 1.45
TMEM39A-203ENST00000461654 RANGAP1P46060 587 aaPredicted RBP24.08■■□□□ 1.45
TMEM39A-203ENST00000461654 KCNH8Q96L42 1107 aa24.08■■□□□ 1.45
TMEM39A-203ENST00000461654 RAPGEF6Q8TEU7 1601 aa24.07■■□□□ 1.44
TMEM39A-203ENST00000461654 CLIP1P30622 1438 aa24.07■■□□□ 1.44
TMEM39A-203ENST00000461654 FHOD3Q2V2M9 1422 aa24.07■■□□□ 1.44
TMEM39A-203ENST00000461654 CD109Q6YHK3 1445 aa24.05■■□□□ 1.44
TMEM39A-203ENST00000461654 AEBP2Q6ZN18 517 aaPredicted RBP24.05■■□□□ 1.44
TMEM39A-203ENST00000461654 MAGI3Q5TCQ9 1506 aa24.05■■□□□ 1.44
TMEM39A-203ENST00000461654 ARID3CA6NKF2 412 aa24.03■■□□□ 1.44
TMEM39A-203ENST00000461654 CFAP43Q8NDM7 1665 aa24.02■■□□□ 1.44
TMEM39A-203ENST00000461654 NUP153P49790 1475 aaKnown RBP24.02■■□□□ 1.44
TMEM39A-203ENST00000461654 COL17A1Q9UMD9 1497 aaPredicted RBP24.02■■□□□ 1.44
TMEM39A-203ENST00000461654 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.95■■□□□ 1.42
TMEM39A-203ENST00000461654 HNRNPUL2Q1KMD3 747 aaKnown RBP23.95■■□□□ 1.42
TMEM39A-203ENST00000461654 ABCA9Q8IUA7 1624 aa23.92■■□□□ 1.42
TMEM39A-203ENST00000461654 PLEKHD1A6NEE1 506 aa23.91■■□□□ 1.42
TMEM39A-203ENST00000461654 ARHGAP35Q9NRY4 1499 aa23.91■■□□□ 1.42
TMEM39A-203ENST00000461654 PHLDB1Q86UU1 1377 aa23.9■■□□□ 1.42
TMEM39A-203ENST00000461654 FMN1Q68DA7 1419 aa23.89■■□□□ 1.41
TMEM39A-203ENST00000461654 ARAP3Q8WWN8 1544 aa23.86■■□□□ 1.41
TMEM39A-203ENST00000461654 KDM4FA0A1W2PPD8 638 aa23.86■■□□□ 1.41
TMEM39A-203ENST00000461654 NEO1Q92859 1461 aa23.81■■□□□ 1.4
TMEM39A-203ENST00000461654 VPS8Q8N3P4 1428 aa23.79■■□□□ 1.4
TMEM39A-203ENST00000461654 CDK13Q14004 1512 aaKnown RBP23.76■■□□□ 1.39
TMEM39A-203ENST00000461654 HECW1Q76N89 1606 aa23.76■■□□□ 1.39
TMEM39A-203ENST00000461654 CDK11AQ9UQ88 783 aaPredicted RBP23.74■■□□□ 1.39
TMEM39A-203ENST00000461654 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.74■■□□□ 1.393e-7■□□□□ 11.1
TMEM39A-203ENST00000461654 ATP1B4Q9UN42 357 aaPredicted RBP23.73■■□□□ 1.39
TMEM39A-203ENST00000461654 ADGRL1O94910 1474 aa23.69■■□□□ 1.38
TMEM39A-203ENST00000461654 APLP2Q06481 763 aa23.69■■□□□ 1.38
TMEM39A-203ENST00000461654 RAPGEF3O95398 923 aa23.68■■□□□ 1.38
TMEM39A-203ENST00000461654 CASKIN1Q8WXD9 1431 aa23.67■■□□□ 1.38
TMEM39A-203ENST00000461654 FANCAO15360 1455 aa23.66■■□□□ 1.38
TMEM39A-203ENST00000461654 AKNAQ7Z591 1439 aa23.66■■□□□ 1.38
TMEM39A-203ENST00000461654 TTC37Q6PGP7 1564 aa23.65■■□□□ 1.38
TMEM39A-203ENST00000461654 PLCH2O75038 1416 aa23.65■■□□□ 1.38
TMEM39A-203ENST00000461654 TROQ12816 1431 aaPredicted RBP23.63■■□□□ 1.37
TMEM39A-203ENST00000461654 CFAP74Q9C0B2 1584 aa23.62■■□□□ 1.37
TMEM39A-203ENST00000461654 DENND4BO75064 1496 aaPredicted RBP23.62■■□□□ 1.37
TMEM39A-203ENST00000461654 CCDC18Q5T9S5 1454 aa23.6■■□□□ 1.37
TMEM39A-203ENST00000461654 FRMPD1Q5SYB0 1578 aa23.6■■□□□ 1.37
TMEM39A-203ENST00000461654 LRRIQ1Q96JM4 1722 aa23.58■■□□□ 1.37
TMEM39A-203ENST00000461654 PCF11O94913 1555 aaKnown RBP23.57■■□□□ 1.36
TMEM39A-203ENST00000461654 FYCO1Q9BQS8 1478 aa23.56■■□□□ 1.36
TMEM39A-203ENST00000461654 EFCAB2Q5VUJ9 269 aa23.56■■□□□ 1.36
TMEM39A-203ENST00000461654 KIF14Q15058 1648 aa23.55■■□□□ 1.36
TMEM39A-203ENST00000461654 RICTORQ6R327 1708 aa23.53■■□□□ 1.36
TMEM39A-203ENST00000461654 SCAPERQ9BY12 1400 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms