RNA–Protein interactions for RNA: ENST00000458610.6

CD28-203, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 705 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-203ENST00000458610 KIAA0586Q9BVV6 1533 aa27.03■■□□□ 1.92
CD28-203ENST00000458610 RAPGEF2Q9Y4G8 1499 aa27.02■■□□□ 1.92
CD28-203ENST00000458610 CSRNP3Q8WYN3 585 aa26.97■■□□□ 1.91
CD28-203ENST00000458610 EEA1Q15075 1411 aa26.97■■□□□ 1.91
CD28-203ENST00000458610 PRG4Q92954 1404 aaPredicted RBP26.97■■□□□ 1.91
CD28-203ENST00000458610 SHROOM2Q13796 1616 aa26.97■■□□□ 1.91
CD28-203ENST00000458610 PRXQ9BXM0 1461 aa26.88■■□□□ 1.89
CD28-203ENST00000458610 ERCC6L2Q5T890 1561 aa26.85■■□□□ 1.89
CD28-203ENST00000458610 FAM9AQ8IZU1 332 aaPredicted RBP26.81■■□□□ 1.88
CD28-203ENST00000458610 CARMIL2Q6F5E8 1435 aa26.81■■□□□ 1.88
CD28-203ENST00000458610 IQGAP2Q13576 1575 aa26.8■■□□□ 1.88
CD28-203ENST00000458610 PTPRGP23470 1445 aa26.69■■□□□ 1.86
CD28-203ENST00000458610 TNIKQ9UKE5 1360 aa26.69■■□□□ 1.86
CD28-203ENST00000458610 UGGT2Q9NYU1 1516 aa26.67■■□□□ 1.86
CD28-203ENST00000458610 NPM1P06748 294 aaKnown RBP eCLIP26.66■■□□□ 1.86
CD28-203ENST00000458610 TRHP20396 242 aaPredicted RBP26.65■■□□□ 1.86
CD28-203ENST00000458610 CTTNBP2Q8WZ74 1663 aa26.63■■□□□ 1.85
CD28-203ENST00000458610 GOLGA3Q08378 1498 aa26.62■■□□□ 1.85
CD28-203ENST00000458610 TTBK1Q5TCY1 1321 aaPredicted RBP26.61■■□□□ 1.85
CD28-203ENST00000458610 DISP1Q96F81 1524 aa26.6■■□□□ 1.85
CD28-203ENST00000458610 KIF21BO75037 1637 aa26.56■■□□□ 1.84
CD28-203ENST00000458610 UBTFP17480 764 aaKnown RBP26.52■■□□□ 1.84
CD28-203ENST00000458610 KIAA0556O60303 1618 aa26.51■■□□□ 1.83
CD28-203ENST00000458610 UACAQ9BZF9 1416 aa26.48■■□□□ 1.83
CD28-203ENST00000458610 ADCY10Q96PN6 1610 aa26.43■■□□□ 1.82
CD28-203ENST00000458610 UHRF1BP1LA0JNW5 1464 aa26.43■■□□□ 1.82
CD28-203ENST00000458610 P3H3Q8IVL6 736 aa26.42■■□□□ 1.82
CD28-203ENST00000458610 EHMT2Q96KQ7 1210 aa26.42■■□□□ 1.82
CD28-203ENST00000458610 RANGAP1P46060 587 aaPredicted RBP26.41■■□□□ 1.82
CD28-203ENST00000458610 ABCC2Q92887 1545 aa26.39■■□□□ 1.81
CD28-203ENST00000458610 MAPKBP1O60336 1514 aa26.35■■□□□ 1.81
CD28-203ENST00000458610 SAMD9Q5K651 1589 aa26.32■■□□□ 1.8
CD28-203ENST00000458610 FAM69CQ0P6D2 419 aa26.29■■□□□ 1.8
CD28-203ENST00000458610 PLB1Q6P1J6 1458 aa26.29■■□□□ 1.8
CD28-203ENST00000458610 KDM5BQ9UGL1 1544 aa26.29■■□□□ 1.8
CD28-203ENST00000458610 EFCAB5A4FU69 1503 aa26.28■■□□□ 1.8
CD28-203ENST00000458610 ABCC10Q5T3U5 1492 aa26.27■■□□□ 1.8
CD28-203ENST00000458610 ABCA8O94911 1581 aa26.24■■□□□ 1.79
CD28-203ENST00000458610 ASXL2Q76L83 1435 aa26.22■■□□□ 1.79
CD28-203ENST00000458610 FHOD3Q2V2M9 1422 aa26.21■■□□□ 1.79
CD28-203ENST00000458610 ZCCHC11Q5TAX3 1644 aaKnown RBP26.14■■□□□ 1.78
CD28-203ENST00000458610 DIP2BQ9P265 1576 aa26.12■■□□□ 1.77
CD28-203ENST00000458610 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.12■■□□□ 1.77
CD28-203ENST00000458610 HNRNPUL2Q1KMD3 747 aaKnown RBP26.12■■□□□ 1.77
CD28-203ENST00000458610 FMN1Q68DA7 1419 aa26.11■■□□□ 1.77
CD28-203ENST00000458610 KIF13AQ9H1H9 1805 aa26.11■■□□□ 1.77
CD28-203ENST00000458610 RAPGEF6Q8TEU7 1601 aa26.1■■□□□ 1.77
CD28-203ENST00000458610 ARHGAP35Q9NRY4 1499 aa26.1■■□□□ 1.77
CD28-203ENST00000458610 ARID3CA6NKF2 412 aa26.09■■□□□ 1.77
CD28-203ENST00000458610 ATP10BO94823 1461 aa26.09■■□□□ 1.77
CD28-203ENST00000458610 WDR7Q9Y4E6 1490 aa26.08■■□□□ 1.77
CD28-203ENST00000458610 GLI2P10070 1586 aa26.06■■□□□ 1.76
CD28-203ENST00000458610 KCNH8Q96L42 1107 aa26.05■■□□□ 1.76
CD28-203ENST00000458610 EPRSP07814 1512 aaKnown RBP26.04■■□□□ 1.76
CD28-203ENST00000458610 ATP1B4Q9UN42 357 aaPredicted RBP26.02■■□□□ 1.76
CD28-203ENST00000458610 NUP153P49790 1475 aaKnown RBP26.02■■□□□ 1.76
CD28-203ENST00000458610 PLEKHD1A6NEE1 506 aa26.01■■□□□ 1.75
CD28-203ENST00000458610 CLIP1P30622 1438 aa26.01■■□□□ 1.75
CD28-203ENST00000458610 CDK11AQ9UQ88 783 aaPredicted RBP25.94■■□□□ 1.74
CD28-203ENST00000458610 LOC105371045A0A1W2PR82 267 aa25.92■■□□□ 1.74
CD28-203ENST00000458610 TEX14Q8IWB6 1497 aa25.9■■□□□ 1.74
CD28-203ENST00000458610 CD109Q6YHK3 1445 aa25.89■■□□□ 1.74
CD28-203ENST00000458610 HECW1Q76N89 1606 aa25.88■■□□□ 1.73
CD28-203ENST00000458610 TSPOAP1O95153 1857 aa25.87■■□□□ 1.73
CD28-203ENST00000458610 MAP3K4Q9Y6R4 1608 aa25.86■■□□□ 1.73
CD28-203ENST00000458610 CASKIN1Q8WXD9 1431 aa25.86■■□□□ 1.73
CD28-203ENST00000458610 CEP162Q5TB80 1403 aa25.84■■□□□ 1.73
CD28-203ENST00000458610 CFAP43Q8NDM7 1665 aa25.82■■□□□ 1.72
CD28-203ENST00000458610 MAGI3Q5TCQ9 1506 aa25.82■■□□□ 1.72
CD28-203ENST00000458610 CDK13Q14004 1512 aaKnown RBP25.79■■□□□ 1.72
CD28-203ENST00000458610 CCDC18Q5T9S5 1454 aa25.77■■□□□ 1.72
CD28-203ENST00000458610 KDM6BO15054 1643 aa25.77■■□□□ 1.72
CD28-203ENST00000458610 FYCO1Q9BQS8 1478 aa25.76■■□□□ 1.71
CD28-203ENST00000458610 PPRC1Q5VV67 1664 aaKnown RBP25.75■■□□□ 1.71
CD28-203ENST00000458610 ABCA9Q8IUA7 1624 aa25.75■■□□□ 1.71
CD28-203ENST00000458610 PHLDB1Q86UU1 1377 aa25.75■■□□□ 1.71
CD28-203ENST00000458610 PCF11O94913 1555 aaKnown RBP25.71■■□□□ 1.71
CD28-203ENST00000458610 TROQ12816 1431 aaPredicted RBP25.7■■□□□ 1.7
CD28-203ENST00000458610 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.64■■□□□ 1.7
CD28-203ENST00000458610 NEO1Q92859 1461 aa25.64■■□□□ 1.69
CD28-203ENST00000458610 COL17A1Q9UMD9 1497 aaPredicted RBP25.61■■□□□ 1.69
CD28-203ENST00000458610 ARAP3Q8WWN8 1544 aa25.59■■□□□ 1.69
CD28-203ENST00000458610 PLCH2O75038 1416 aa25.59■■□□□ 1.69
CD28-203ENST00000458610 EFCAB2Q5VUJ9 269 aa25.58■■□□□ 1.69
CD28-203ENST00000458610 KIF14Q15058 1648 aa25.58■■□□□ 1.69
CD28-203ENST00000458610 LRRIQ1Q96JM4 1722 aa25.57■■□□□ 1.68
CD28-203ENST00000458610 VPS8Q8N3P4 1428 aa25.56■■□□□ 1.68
CD28-203ENST00000458610 FANCAO15360 1455 aa25.55■■□□□ 1.68
CD28-203ENST00000458610 TTC37Q6PGP7 1564 aa25.55■■□□□ 1.68
CD28-203ENST00000458610 MTUS2Q5JR59 1369 aa25.54■■□□□ 1.68
CD28-203ENST00000458610 AKNAQ7Z591 1439 aa25.54■■□□□ 1.68
CD28-203ENST00000458610 CFAP74Q9C0B2 1584 aa25.52■■□□□ 1.68
CD28-203ENST00000458610 RAPGEF3O95398 923 aa25.48■■□□□ 1.67
CD28-203ENST00000458610 DENND4BO75064 1496 aaPredicted RBP25.47■■□□□ 1.67
CD28-203ENST00000458610 APLP2Q06481 763 aa25.46■■□□□ 1.67
CD28-203ENST00000458610 MYO5CQ9NQX4 1742 aa25.45■■□□□ 1.66
CD28-203ENST00000458610 ARHGAP5Q13017 1502 aa25.42■■□□□ 1.66
CD28-203ENST00000458610 ADGRL1O94910 1474 aa25.41■■□□□ 1.66
CD28-203ENST00000458610 SCAPERQ9BY12 1400 aa25.41■■□□□ 1.66
CD28-203ENST00000458610 CCNB3Q8WWL7 1395 aa25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms