RNA–Protein interactions for RNA: ENST00000457039.6

SMPD4-215, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 940 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-215ENST00000457039 SHROOM2Q13796 1616 aa23.5■■□□□ 1.35
SMPD4-215ENST00000457039 RIMBP3CA6NJZ7 1639 aa23.48■■□□□ 1.35
SMPD4-215ENST00000457039 RIMBP3BA6NNM3 1639 aa23.48■■□□□ 1.35
SMPD4-215ENST00000457039 RIMBP3Q9UFD9 1639 aa23.48■■□□□ 1.35
SMPD4-215ENST00000457039 KIF21BO75037 1637 aa23.45■■□□□ 1.34
SMPD4-215ENST00000457039 JPH4Q96JJ6 628 aa23.43■■□□□ 1.34
SMPD4-215ENST00000457039 IQGAP2Q13576 1575 aa23.4■■□□□ 1.34
SMPD4-215ENST00000457039 ERCC6L2Q5T890 1561 aa23.39■■□□□ 1.33
SMPD4-215ENST00000457039 CTTNBP2Q8WZ74 1663 aa23.37■■□□□ 1.33
SMPD4-215ENST00000457039 PRG4Q92954 1404 aaPredicted RBP23.36■■□□□ 1.33
SMPD4-215ENST00000457039 ARAP1Q96P48 1450 aa23.36■■□□□ 1.33
SMPD4-215ENST00000457039 UGGT2Q9NYU1 1516 aa23.31■■□□□ 1.32
SMPD4-215ENST00000457039 GOLGA3Q08378 1498 aa23.3■■□□□ 1.32
SMPD4-215ENST00000457039 DISP1Q96F81 1524 aa23.25■■□□□ 1.31
SMPD4-215ENST00000457039 CYB5RLQ6IPT4 315 aa23.24■■□□□ 1.31
SMPD4-215ENST00000457039 CARMIL2Q6F5E8 1435 aa23.22■■□□□ 1.31
SMPD4-215ENST00000457039 KIAA0556O60303 1618 aa23.19■■□□□ 1.3
SMPD4-215ENST00000457039 EHMT2Q96KQ7 1210 aa23.19■■□□□ 1.3
SMPD4-215ENST00000457039 UBTFP17480 764 aaKnown RBP23.17■■□□□ 1.3
SMPD4-215ENST00000457039 TNIKQ9UKE5 1360 aa23.15■■□□□ 1.3
SMPD4-215ENST00000457039 SAMD9Q5K651 1589 aa23.13■■□□□ 1.29
SMPD4-215ENST00000457039 PTPRGP23470 1445 aa23.11■■□□□ 1.29
SMPD4-215ENST00000457039 EFCAB5A4FU69 1503 aa23.05■■□□□ 1.28
SMPD4-215ENST00000457039 RANGAP1P46060 587 aaPredicted RBP23.02■■□□□ 1.28
SMPD4-215ENST00000457039 ADCY10Q96PN6 1610 aa23■■□□□ 1.27
SMPD4-215ENST00000457039 P3H3Q8IVL6 736 aa23■■□□□ 1.27
SMPD4-215ENST00000457039 TTBK1Q5TCY1 1321 aaPredicted RBP23■■□□□ 1.27
SMPD4-215ENST00000457039 ARHGAP35Q9NRY4 1499 aa22.98■■□□□ 1.27
SMPD4-215ENST00000457039 FHOD3Q2V2M9 1422 aa22.98■■□□□ 1.27
SMPD4-215ENST00000457039 UACAQ9BZF9 1416 aa22.98■■□□□ 1.27
SMPD4-215ENST00000457039 UHRF1BP1LA0JNW5 1464 aa22.98■■□□□ 1.27
SMPD4-215ENST00000457039 LOC105371045A0A1W2PR82 267 aa22.96■■□□□ 1.27
SMPD4-215ENST00000457039 ABCA8O94911 1581 aa22.94■■□□□ 1.26
SMPD4-215ENST00000457039 ABCC2Q92887 1545 aa22.94■■□□□ 1.26
SMPD4-215ENST00000457039 PLB1Q6P1J6 1458 aa22.94■■□□□ 1.26
SMPD4-215ENST00000457039 CLIP1P30622 1438 aa22.89■■□□□ 1.25
SMPD4-215ENST00000457039 KDM5BQ9UGL1 1544 aa22.86■■□□□ 1.25
SMPD4-215ENST00000457039 CEP162Q5TB80 1403 aa22.84■■□□□ 1.25
SMPD4-215ENST00000457039 RAPGEF6Q8TEU7 1601 aa22.83■■□□□ 1.25
SMPD4-215ENST00000457039 NPM1P06748 294 aaKnown RBP eCLIP22.83■■□□□ 1.25
SMPD4-215ENST00000457039 FMN1Q68DA7 1419 aa22.82■■□□□ 1.24
SMPD4-215ENST00000457039 MAPKBP1O60336 1514 aa22.82■■□□□ 1.24
SMPD4-215ENST00000457039 ZCCHC11Q5TAX3 1644 aaKnown RBP22.79■■□□□ 1.24
SMPD4-215ENST00000457039 NUP153P49790 1475 aaKnown RBP22.78■■□□□ 1.24
SMPD4-215ENST00000457039 ATP10BO94823 1461 aa22.74■■□□□ 1.23
SMPD4-215ENST00000457039 ASXL2Q76L83 1435 aa22.72■■□□□ 1.23
SMPD4-215ENST00000457039 HECW1Q76N89 1606 aa22.68■■□□□ 1.22
SMPD4-215ENST00000457039 ABCC10Q5T3U5 1492 aa22.68■■□□□ 1.22
SMPD4-215ENST00000457039 CASKIN1Q8WXD9 1431 aa22.68■■□□□ 1.22
SMPD4-215ENST00000457039 PCF11O94913 1555 aaKnown RBP22.67■■□□□ 1.22
SMPD4-215ENST00000457039 ARID3CA6NKF2 412 aa22.67■■□□□ 1.22
SMPD4-215ENST00000457039 DIP2BQ9P265 1576 aa22.65■■□□□ 1.22
SMPD4-215ENST00000457039 TRHP20396 242 aaPredicted RBP22.65■■□□□ 1.22
SMPD4-215ENST00000457039 WDR7Q9Y4E6 1490 aa22.64■■□□□ 1.21
SMPD4-215ENST00000457039 EPRSP07814 1512 aaKnown RBP22.63■■□□□ 1.21
SMPD4-215ENST00000457039 FYCO1Q9BQS8 1478 aa22.63■■□□□ 1.21
SMPD4-215ENST00000457039 KIF13AQ9H1H9 1805 aa22.63■■□□□ 1.21
SMPD4-215ENST00000457039 CDK13Q14004 1512 aaKnown RBP22.62■■□□□ 1.21
SMPD4-215ENST00000457039 LRRIQ1Q96JM4 1722 aa22.6■■□□□ 1.21
SMPD4-215ENST00000457039 GLI2P10070 1586 aa22.59■■□□□ 1.21
SMPD4-215ENST00000457039 FAM69CQ0P6D2 419 aa22.58■■□□□ 1.21
SMPD4-215ENST00000457039 ATP1B4Q9UN42 357 aaPredicted RBP22.58■■□□□ 1.21
SMPD4-215ENST00000457039 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.57■■□□□ 1.2
SMPD4-215ENST00000457039 HNRNPUL2Q1KMD3 747 aaKnown RBP22.57■■□□□ 1.2
SMPD4-215ENST00000457039 VPS8Q8N3P4 1428 aa22.57■■□□□ 1.2
SMPD4-215ENST00000457039 CCDC18Q5T9S5 1454 aa22.55■■□□□ 1.2
SMPD4-215ENST00000457039 PLEKHD1A6NEE1 506 aa22.51■■□□□ 1.19
SMPD4-215ENST00000457039 KCNH8Q96L42 1107 aa22.5■■□□□ 1.19
SMPD4-215ENST00000457039 MAP3K4Q9Y6R4 1608 aa22.47■■□□□ 1.19
SMPD4-215ENST00000457039 CDK11AQ9UQ88 783 aaPredicted RBP22.46■■□□□ 1.19
SMPD4-215ENST00000457039 TROQ12816 1431 aaPredicted RBP22.45■■□□□ 1.18
SMPD4-215ENST00000457039 MAGI3Q5TCQ9 1506 aa22.45■■□□□ 1.18
SMPD4-215ENST00000457039 ABCA9Q8IUA7 1624 aa22.45■■□□□ 1.18
SMPD4-215ENST00000457039 CFAP43Q8NDM7 1665 aa22.43■■□□□ 1.18
SMPD4-215ENST00000457039 PPRC1Q5VV67 1664 aaKnown RBP22.42■■□□□ 1.18
SMPD4-215ENST00000457039 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.4■■□□□ 1.18
SMPD4-215ENST00000457039 CD109Q6YHK3 1445 aa22.4■■□□□ 1.18
SMPD4-215ENST00000457039 TSPOAP1O95153 1857 aa22.38■■□□□ 1.17
SMPD4-215ENST00000457039 KIF14Q15058 1648 aa22.38■■□□□ 1.17
SMPD4-215ENST00000457039 TIAM1Q13009 1591 aa22.37■■□□□ 1.17
SMPD4-215ENST00000457039 MAP3K1Q13233 1512 aa22.36■■□□□ 1.17
SMPD4-215ENST00000457039 TTC37Q6PGP7 1564 aa22.36■■□□□ 1.17
SMPD4-215ENST00000457039 TEX14Q8IWB6 1497 aa22.33■■□□□ 1.16
SMPD4-215ENST00000457039 EHBP1L1Q8N3D4 1523 aa22.31■■□□□ 1.16
SMPD4-215ENST00000457039 MTUS2Q5JR59 1369 aa22.31■■□□□ 1.16
SMPD4-215ENST00000457039 LRRC9Q6ZRR7 1453 aa22.28■■□□□ 1.16
SMPD4-215ENST00000457039 PLCH2O75038 1416 aa22.27■■□□□ 1.16
SMPD4-215ENST00000457039 ARAP3Q8WWN8 1544 aa22.25■■□□□ 1.15
SMPD4-215ENST00000457039 KANK4Q5T7N3 995 aaPredicted RBP22.24■■□□□ 1.15
SMPD4-215ENST00000457039 MYO5CQ9NQX4 1742 aa22.23■■□□□ 1.15
SMPD4-215ENST00000457039 NEO1Q92859 1461 aa22.23■■□□□ 1.15
SMPD4-215ENST00000457039 FANCAO15360 1455 aa22.21■■□□□ 1.15
SMPD4-215ENST00000457039 COL17A1Q9UMD9 1497 aaPredicted RBP22.21■■□□□ 1.15
SMPD4-215ENST00000457039 APLP2Q06481 763 aa22.2■■□□□ 1.14
SMPD4-215ENST00000457039 PHLDB1Q86UU1 1377 aa22.2■■□□□ 1.14
SMPD4-215ENST00000457039 KDM6BO15054 1643 aa22.2■■□□□ 1.14
SMPD4-215ENST00000457039 NCOA2Q15596 1464 aa22.19■■□□□ 1.14
SMPD4-215ENST00000457039 GPATCH8Q9UKJ3 1502 aaKnown RBP22.19■■□□□ 1.14
SMPD4-215ENST00000457039 PREX2Q70Z35 1606 aa22.19■■□□□ 1.14
SMPD4-215ENST00000457039 SUPT6HQ7KZ85 1726 aaKnown RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms