RNA–Protein interactions for RNA: ENST00000457039.6

SMPD4-215, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 940 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-215ENST00000457039 NISCHQ9Y2I1 1504 aa34.08■■■■□ 3.05
SMPD4-215ENST00000457039 CCDC180Q9P1Z9 1646 aa30.18■■■□□ 2.42
SMPD4-215ENST00000457039 ABCC9O60706 1549 aa29.29■■■□□ 2.28
SMPD4-215ENST00000457039 ZCCHC6Q5VYS8 1495 aaKnown RBP28.46■■■□□ 2.15
SMPD4-215ENST00000457039 NACADO15069 1562 aa28.33■■■□□ 2.12
SMPD4-215ENST00000457039 RB1CC1Q8TDY2 1594 aa28.28■■■□□ 2.12
SMPD4-215ENST00000457039 DCAF8L2P0C7V8 631 aa28.27■■■□□ 2.12
SMPD4-215ENST00000457039 MYO15BQ96JP2 1530 aa28.27■■■□□ 2.12
SMPD4-215ENST00000457039 DCAF1Q9Y4B6 1507 aa28.23■■■□□ 2.11
SMPD4-215ENST00000457039 UNC13AQ9UPW8 1703 aa27.65■■■□□ 2.02
SMPD4-215ENST00000457039 SCRIBQ14160 1630 aa27.53■■■□□ 2
SMPD4-215ENST00000457039 BICRAQ9NZM4 1560 aa27.47■■□□□ 1.99
SMPD4-215ENST00000457039 PABPN1Q86U42 306 aaKnown RBP eCLIP27.4■■□□□ 1.983e-6■■□□□ 13.8
SMPD4-215ENST00000457039 SHROOM4Q9ULL8 1493 aa27.19■■□□□ 1.94
SMPD4-215ENST00000457039 DNAJC5BQ9UF47 199 aa26.71■■□□□ 1.87
SMPD4-215ENST00000457039 EIF4G1Q04637 1599 aaKnown RBP26.7■■□□□ 1.86
SMPD4-215ENST00000457039 CECR2Q9BXF3 1484 aa26.53■■□□□ 1.84
SMPD4-215ENST00000457039 CC2D2AQ9P2K1 1620 aa26.52■■□□□ 1.84
SMPD4-215ENST00000457039 SMARCA4P51532 1647 aa26.39■■□□□ 1.81
SMPD4-215ENST00000457039 BAZ1AQ9NRL2 1556 aaPredicted RBP26.38■■□□□ 1.81
SMPD4-215ENST00000457039 MROH2BQ7Z745 1585 aa26.27■■□□□ 1.8
SMPD4-215ENST00000457039 ATAD2BQ9ULI0 1458 aa26.2■■□□□ 1.78
SMPD4-215ENST00000457039 NCAPD3P42695 1498 aa26.16■■□□□ 1.78
SMPD4-215ENST00000457039 PEG3Q9GZU2 1588 aa26.16■■□□□ 1.78
SMPD4-215ENST00000457039 SMARCA2P51531 1590 aa26.15■■□□□ 1.78
SMPD4-215ENST00000457039 RSF1Q96T23 1441 aaPredicted RBP26.05■■□□□ 1.76
SMPD4-215ENST00000457039 HMGXB3Q12766 1538 aa26.04■■□□□ 1.76
SMPD4-215ENST00000457039 WIZO95785 1651 aa25.98■■□□□ 1.75
SMPD4-215ENST00000457039 BAZ1BQ9UIG0 1483 aaKnown RBP25.96■■□□□ 1.75
SMPD4-215ENST00000457039 TOP2AP11388 1531 aaKnown RBP25.73■■□□□ 1.71
SMPD4-215ENST00000457039 SUPT5HO00267 1087 aaKnown RBP25.48■■□□□ 1.67
SMPD4-215ENST00000457039 NESP48681 1621 aa25.43■■□□□ 1.66
SMPD4-215ENST00000457039 CCDC88BA6NC98 1476 aa25.42■■□□□ 1.66
SMPD4-215ENST00000457039 LAMC3Q9Y6N6 1575 aa25.4■■□□□ 1.66
SMPD4-215ENST00000457039 CADPSQ9ULU8 1353 aa25.39■■□□□ 1.65
SMPD4-215ENST00000457039 CFTRP13569 1480 aa25.3■■□□□ 1.64
SMPD4-215ENST00000457039 PDS5BQ9NTI5 1447 aa25.2■■□□□ 1.63
SMPD4-215ENST00000457039 ERCC6Q03468 1493 aa25.19■■□□□ 1.62
SMPD4-215ENST00000457039 KIF21AQ7Z4S6 1674 aa25.11■■□□□ 1.61
SMPD4-215ENST00000457039 PRDM2Q13029 1718 aa25.09■■□□□ 1.61
SMPD4-215ENST00000457039 FANCD2Q9BXW9 1451 aa25.09■■□□□ 1.61
SMPD4-215ENST00000457039 CEP164Q9UPV0 1460 aa25.02■■□□□ 1.6
SMPD4-215ENST00000457039 THOC2Q8NI27 1593 aaKnown RBP25.01■■□□□ 1.59
SMPD4-215ENST00000457039 MRC2Q9UBG0 1479 aa24.95■■□□□ 1.58
SMPD4-215ENST00000457039 CUX2O14529 1486 aa24.89■■□□□ 1.58
SMPD4-215ENST00000457039 WDR62O43379 1518 aa24.88■■□□□ 1.57
SMPD4-215ENST00000457039 URB2Q14146 1524 aaKnown RBP24.84■■□□□ 1.57
SMPD4-215ENST00000457039 TOPBP1Q92547 1522 aa24.71■■□□□ 1.55
SMPD4-215ENST00000457039 ABCC8Q09428 1581 aa24.71■■□□□ 1.55
SMPD4-215ENST00000457039 DNMBPQ6XZF7 1577 aa24.71■■□□□ 1.55
SMPD4-215ENST00000457039 CUX1P39880 1505 aa24.63■■□□□ 1.53
SMPD4-215ENST00000457039 WRNQ14191 1432 aaPredicted RBP eCLIP24.53■■□□□ 1.52
SMPD4-215ENST00000457039 POLA1P09884 1462 aaPredicted RBP24.53■■□□□ 1.52
SMPD4-215ENST00000457039 IFT140Q96RY7 1462 aa24.5■■□□□ 1.51
SMPD4-215ENST00000457039 FGD5Q6ZNL6 1462 aa24.49■■□□□ 1.51
SMPD4-215ENST00000457039 SYNJ1O43426 1573 aa24.48■■□□□ 1.51
SMPD4-215ENST00000457039 TOP2BQ02880 1626 aa24.47■■□□□ 1.51
SMPD4-215ENST00000457039 BIVM-ERCC5R4GMW8 1640 aa24.46■■□□□ 1.51
SMPD4-215ENST00000457039 TARBP1Q13395 1621 aaKnown RBP24.44■■□□□ 1.5
SMPD4-215ENST00000457039 RAD54L2Q9Y4B4 1467 aa24.41■■□□□ 1.5
SMPD4-215ENST00000457039 SOGA1O94964 1423 aa24.41■■□□□ 1.5
SMPD4-215ENST00000457039 ZNF608Q9ULD9 1512 aaPredicted RBP24.38■■□□□ 1.49
SMPD4-215ENST00000457039 WDR97A6NE52 1622 aa24.3■■□□□ 1.48
SMPD4-215ENST00000457039 ABCA10Q8WWZ4 1543 aa24.29■■□□□ 1.48
SMPD4-215ENST00000457039 EIF4G3O43432 1585 aaKnown RBP24.28■■□□□ 1.48
SMPD4-215ENST00000457039 AQRO60306 1485 aaKnown RBP eCLIP24.26■■□□□ 1.475e-7■■■■□ 25.6
SMPD4-215ENST00000457039 TDRD9Q8NDG6 1382 aaKnown RBP24.24■■□□□ 1.47
SMPD4-215ENST00000457039 ABCA5Q8WWZ7 1642 aa24.17■■□□□ 1.46
SMPD4-215ENST00000457039 GAPVD1Q14C86 1478 aa24.14■■□□□ 1.46
SMPD4-215ENST00000457039 GRIN2BQ13224 1484 aa24.1■■□□□ 1.45
SMPD4-215ENST00000457039 TRIM41Q8WV44 630 aa24.07■■□□□ 1.44
SMPD4-215ENST00000457039 PBRM1Q86U86 1689 aa24.06■■□□□ 1.44
SMPD4-215ENST00000457039 SNAPC4Q5SXM2 1469 aa24.04■■□□□ 1.44
SMPD4-215ENST00000457039 MAGI1Q96QZ7 1491 aaPredicted RBP24.02■■□□□ 1.44
SMPD4-215ENST00000457039 KIF27Q86VH2 1401 aa24■■□□□ 1.43
SMPD4-215ENST00000457039 ERICH3Q5RHP9 1530 aa23.99■■□□□ 1.43
SMPD4-215ENST00000457039 CHIC1Q5VXU3 224 aa23.97■■□□□ 1.43
SMPD4-215ENST00000457039 ADAMTS12P58397 1594 aa23.92■■□□□ 1.42
SMPD4-215ENST00000457039 SYNJ2O15056 1496 aa23.92■■□□□ 1.42
SMPD4-215ENST00000457039 CHD1O14646 1710 aa23.91■■□□□ 1.42
SMPD4-215ENST00000457039 IGF1RP08069 1367 aa23.91■■□□□ 1.42
SMPD4-215ENST00000457039 RUSC2Q8N2Y8 1516 aa23.88■■□□□ 1.41
SMPD4-215ENST00000457039 FHAD1B1AJZ9 1412 aa23.87■■□□□ 1.41
SMPD4-215ENST00000457039 OSCARQ8IYS5 282 aa23.87■■□□□ 1.41
SMPD4-215ENST00000457039 FBLN2P98095 1184 aa23.85■■□□□ 1.41
SMPD4-215ENST00000457039 CHMP7Q8WUX9 453 aaPredicted RBP23.85■■□□□ 1.41
SMPD4-215ENST00000457039 DNAJC5Q9H3Z4 198 aa23.85■■□□□ 1.41
SMPD4-215ENST00000457039 GRIN2AQ12879 1464 aa23.8■■□□□ 1.4
SMPD4-215ENST00000457039 CUL7Q14999 1698 aa23.79■■□□□ 1.4
SMPD4-215ENST00000457039 CARMIL1Q5VZK9 1371 aa23.74■■□□□ 1.39
SMPD4-215ENST00000457039 NUP160Q12769 1436 aa23.71■■□□□ 1.39
SMPD4-215ENST00000457039 CLASP1Q7Z460 1538 aa23.7■■□□□ 1.38
SMPD4-215ENST00000457039 EEA1Q15075 1411 aa23.7■■□□□ 1.38
SMPD4-215ENST00000457039 CEP170Q5SW79 1584 aa23.68■■□□□ 1.38
SMPD4-215ENST00000457039 PRXQ9BXM0 1461 aa23.63■■□□□ 1.37
SMPD4-215ENST00000457039 RAPGEF2Q9Y4G8 1499 aa23.62■■□□□ 1.37
SMPD4-215ENST00000457039 CSRNP3Q8WYN3 585 aa23.62■■□□□ 1.37
SMPD4-215ENST00000457039 FAM9AQ8IZU1 332 aaPredicted RBP23.55■■□□□ 1.36
SMPD4-215ENST00000457039 ARHGEF11O15085 1522 aa23.52■■□□□ 1.36
SMPD4-215ENST00000457039 KIAA0586Q9BVV6 1533 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms