RNA–Protein interactions for RNA: ENST00000444502.5

TOP3B-210, Transcript of DNA topoisomerase III beta, humanhuman

TSL 2

Gene TOP3B, Length 4,163 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-210ENST00000444502 HIRIP3Q9BW71 556 aaPredicted RBP14.91□□□□□ -0.02
TOP3B-210ENST00000444502 NEFLP07196 543 aa14.9□□□□□ -0.02
TOP3B-210ENST00000444502 SYNJ1O43426 1573 aa14.89□□□□□ -0.03
TOP3B-210ENST00000444502 DDX10Q13206 875 aaKnown RBP14.87□□□□□ -0.03
TOP3B-210ENST00000444502 RRP7BPQ9NSQ0 103 aa14.86□□□□□ -0.03
TOP3B-210ENST00000444502 CHGAP10645 457 aaKnown RBP14.86□□□□□ -0.03
TOP3B-210ENST00000444502 PLEKHD1A6NEE1 506 aa14.85□□□□□ -0.03
TOP3B-210ENST00000444502 CCNB3Q8WWL7 1395 aa14.84□□□□□ -0.03
TOP3B-210ENST00000444502 UNC13AQ9UPW8 1703 aa14.84□□□□□ -0.03
TOP3B-210ENST00000444502 TSPY4P0CV99 314 aa14.84□□□□□ -0.03
TOP3B-210ENST00000444502 TSPY10P0CW01 314 aa14.84□□□□□ -0.03
TOP3B-210ENST00000444502 SIN3AQ96ST3 1273 aa14.84□□□□□ -0.03
TOP3B-210ENST00000444502 EIF4G1Q04637 1599 aaKnown RBP14.83□□□□□ -0.04
TOP3B-210ENST00000444502 SENP3Q9H4L4 574 aaPredicted RBP14.83□□□□□ -0.04
TOP3B-210ENST00000444502 NCAPD3P42695 1498 aa14.83□□□□□ -0.04
TOP3B-210ENST00000444502 DNAJC5BQ9UF47 199 aa14.82□□□□□ -0.04
TOP3B-210ENST00000444502 ESF1Q9H501 851 aaKnown RBP14.8□□□□□ -0.04
TOP3B-210ENST00000444502 ANP32CO43423 234 aa14.79□□□□□ -0.04
TOP3B-210ENST00000444502 TONSLQ96HA7 1378 aa14.78□□□□□ -0.04
TOP3B-210ENST00000444502 FANCD2Q9BXW9 1451 aa14.76□□□□□ -0.05
TOP3B-210ENST00000444502 CFDP1Q9UEE9 299 aaPredicted RBP14.75□□□□□ -0.05
TOP3B-210ENST00000444502 IGF1RP08069 1367 aa14.75□□□□□ -0.05
TOP3B-210ENST00000444502 KIF21BO75037 1637 aa14.72□□□□□ -0.05
TOP3B-210ENST00000444502 STAG3Q9UJ98 1225 aa14.72□□□□□ -0.05
TOP3B-210ENST00000444502 FHAD1B1AJZ9 1412 aa14.71□□□□□ -0.05
TOP3B-210ENST00000444502 FHOD3Q2V2M9 1422 aa14.71□□□□□ -0.05
TOP3B-210ENST00000444502 KDM2AQ9Y2K7 1162 aa14.71□□□□□ -0.05
TOP3B-210ENST00000444502 FGD5Q6ZNL6 1462 aa14.69□□□□□ -0.06
TOP3B-210ENST00000444502 CFTRP13569 1480 aa14.69□□□□□ -0.06
TOP3B-210ENST00000444502 RAD54L2Q9Y4B4 1467 aa14.69□□□□□ -0.06
TOP3B-210ENST00000444502 CLSPNQ9HAW4 1339 aa14.67□□□□□ -0.06
TOP3B-210ENST00000444502 RAB3GAP2Q9H2M9 1393 aa14.67□□□□□ -0.06
TOP3B-210ENST00000444502 NESP48681 1621 aa14.67□□□□□ -0.06
TOP3B-210ENST00000444502 CUX1P39880 1505 aa14.66□□□□□ -0.06
TOP3B-210ENST00000444502 ARAP1Q96P48 1450 aa14.65□□□□□ -0.06
TOP3B-210ENST00000444502 TOP2BQ02880 1626 aa14.64□□□□□ -0.07
TOP3B-210ENST00000444502 DHX57Q6P158 1386 aaKnown RBP14.64□□□□□ -0.07
TOP3B-210ENST00000444502 TSHZ2Q9NRE2 1034 aa14.63□□□□□ -0.07
TOP3B-210ENST00000444502 PRXQ9BXM0 1461 aa14.63□□□□□ -0.07
TOP3B-210ENST00000444502 PEG3Q9GZU2 1588 aa14.63□□□□□ -0.07
TOP3B-210ENST00000444502 SETD5Q9C0A6 1442 aa14.62□□□□□ -0.07
TOP3B-210ENST00000444502 RGL3Q3MIN7 710 aa14.62□□□□□ -0.07
TOP3B-210ENST00000444502 TRHP20396 242 aaPredicted RBP14.61□□□□□ -0.07
TOP3B-210ENST00000444502 SUPT16HQ9Y5B9 1047 aaKnown RBP14.6□□□□□ -0.07
TOP3B-210ENST00000444502 CC2D2AQ9P2K1 1620 aa14.6□□□□□ -0.07
TOP3B-210ENST00000444502 JPH4Q96JJ6 628 aa14.59□□□□□ -0.07
TOP3B-210ENST00000444502 HMGXB3Q12766 1538 aa14.59□□□□□ -0.07
TOP3B-210ENST00000444502 ARHGAP35Q9NRY4 1499 aa14.57□□□□□ -0.08
TOP3B-210ENST00000444502 ARID4BQ4LE39 1312 aaPredicted RBP14.57□□□□□ -0.08
TOP3B-210ENST00000444502 FKBP8Q14318 412 aa14.55□□□□□ -0.08
TOP3B-210ENST00000444502 FOXD1Q16676 465 aa14.54□□□□□ -0.08
TOP3B-210ENST00000444502 AQRO60306 1485 aaKnown RBP eCLIP14.53□□□□□ -0.084e-7■■■■■ 29.7
TOP3B-210ENST00000444502 HNRNPUQ00839 825 aaKnown RBP eCLIP14.53□□□□□ -0.08
TOP3B-210ENST00000444502 FMN1Q68DA7 1419 aa14.53□□□□□ -0.08
TOP3B-210ENST00000444502 ERICH3Q5RHP9 1530 aa14.53□□□□□ -0.08
TOP3B-210ENST00000444502 CARMIL2Q6F5E8 1435 aa14.52□□□□□ -0.09
TOP3B-210ENST00000444502 PHLDB1Q86UU1 1377 aa14.52□□□□□ -0.09
TOP3B-210ENST00000444502 FAM9BQ8IZU0 186 aa14.51□□□□□ -0.09
TOP3B-210ENST00000444502 MLECQ14165 292 aa14.51□□□□□ -0.09
TOP3B-210ENST00000444502 CCDC136Q96JN2 1154 aa14.51□□□□□ -0.09
TOP3B-210ENST00000444502 ANO8Q9HCE9 1232 aaPredicted RBP14.5□□□□□ -0.09
TOP3B-210ENST00000444502 EIF5BO60841 1220 aaKnown RBP14.49□□□□□ -0.09
TOP3B-210ENST00000444502 EIF4G2P78344 907 aaKnown RBP eCLIP14.49□□□□□ -0.09
TOP3B-210ENST00000444502 CYB5RLQ6IPT4 315 aa14.48□□□□□ -0.09
TOP3B-210ENST00000444502 GAPVD1Q14C86 1478 aa14.47□□□□□ -0.09
TOP3B-210ENST00000444502 PPP1R15AO75807 674 aaPredicted RBP14.46□□□□□ -0.1
TOP3B-210ENST00000444502 SLC24A1O60721 1099 aa14.45□□□□□ -0.1
TOP3B-210ENST00000444502 PLEKHG5O94827 1062 aa14.45□□□□□ -0.1
TOP3B-210ENST00000444502 RTN4Q9NQC3 1192 aaKnown RBP14.45□□□□□ -0.1
TOP3B-210ENST00000444502 SENP3-EIF4A1A0A087X0R7 540 aa14.44□□□□□ -0.1
TOP3B-210ENST00000444502 POLA1P09884 1462 aaPredicted RBP14.44□□□□□ -0.1
TOP3B-210ENST00000444502 NBR1Q14596 966 aa14.43□□□□□ -0.1
TOP3B-210ENST00000444502 LRRC9Q6ZRR7 1453 aa14.43□□□□□ -0.1
TOP3B-210ENST00000444502 SALL2Q9Y467 1007 aaPredicted RBP14.42□□□□□ -0.1
TOP3B-210ENST00000444502 TOPBP1Q92547 1522 aa14.42□□□□□ -0.1
TOP3B-210ENST00000444502 IRX6P78412 446 aaPredicted RBP14.42□□□□□ -0.1
TOP3B-210ENST00000444502 GGT6Q6P531 493 aa14.42□□□□□ -0.1
TOP3B-210ENST00000444502 MRS2Q9HD23 443 aa14.41□□□□□ -0.1
TOP3B-210ENST00000444502 RRBP1Q9P2E9 1410 aaKnown RBP14.41□□□□□ -0.1
TOP3B-210ENST00000444502 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.4□□□□□ -0.1
TOP3B-210ENST00000444502 OSCARQ8IYS5 282 aa14.4□□□□□ -0.1
TOP3B-210ENST00000444502 TIMELESSQ9UNS1 1208 aa14.4□□□□□ -0.1
TOP3B-210ENST00000444502 HNRNPMP52272 730 aaKnown RBP eCLIP14.4□□□□□ -0.12e-6■■■■■ 28.8
TOP3B-210ENST00000444502 MPHOSPH9Q99550 1183 aa14.39□□□□□ -0.11
TOP3B-210ENST00000444502 RBM19Q9Y4C8 960 aaKnown RBP14.38□□□□□ -0.11
TOP3B-210ENST00000444502 RTL5Q5HYW3 569 aaPredicted RBP14.37□□□□□ -0.11
TOP3B-210ENST00000444502 DEKP35659 375 aaKnown RBP14.37□□□□□ -0.11
TOP3B-210ENST00000444502 HSPA5P11021 654 aaKnown RBP14.36□□□□□ -0.11
TOP3B-210ENST00000444502 BIVM-ERCC5R4GMW8 1640 aa14.36□□□□□ -0.11
TOP3B-210ENST00000444502 PTPRGP23470 1445 aa14.35□□□□□ -0.11
TOP3B-210ENST00000444502 EFCAB2Q5VUJ9 269 aa14.34□□□□□ -0.11
TOP3B-210ENST00000444502 L3MBTL2Q969R5 705 aa14.33□□□□□ -0.12
TOP3B-210ENST00000444502 FGD6Q6ZV73 1430 aa14.33□□□□□ -0.12
TOP3B-210ENST00000444502 ZNF644Q9H582 1327 aaPredicted RBP14.33□□□□□ -0.12
TOP3B-210ENST00000444502 CASKIN1Q8WXD9 1431 aa14.32□□□□□ -0.12
TOP3B-210ENST00000444502 TMC1Q8TDI8 760 aa14.31□□□□□ -0.12
TOP3B-210ENST00000444502 PKD2Q13563 968 aa14.3□□□□□ -0.12
TOP3B-210ENST00000444502 DCAF11Q8TEB1 546 aa14.3□□□□□ -0.12
TOP3B-210ENST00000444502 CARD11Q9BXL7 1154 aa14.29□□□□□ -0.12
TOP3B-210ENST00000444502 CCDC18Q5T9S5 1454 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms