RNA–Protein interactions for RNA: ENST00000439962.1

EDEM3-203, Transcript of ER degradation enhancing alpha-mannosidase like protein 3, humanhuman

TSL 1 (best)

Gene EDEM3, Length 2,872 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EDEM3-203ENST00000439962 ABCA5Q8WWZ7 1642 aa7.66□□□□□ -1.18
EDEM3-203ENST00000439962 ERCC6L2Q5T890 1561 aa7.65□□□□□ -1.18
EDEM3-203ENST00000439962 WDR97A6NE52 1622 aa7.65□□□□□ -1.18
EDEM3-203ENST00000439962 CSRNP3Q8WYN3 585 aa7.65□□□□□ -1.19
EDEM3-203ENST00000439962 PRG4Q92954 1404 aaPredicted RBP7.64□□□□□ -1.19
EDEM3-203ENST00000439962 ARAP1Q96P48 1450 aa7.63□□□□□ -1.19
EDEM3-203ENST00000439962 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.63□□□□□ -1.19
EDEM3-203ENST00000439962 HNRNPUL2Q1KMD3 747 aaKnown RBP7.63□□□□□ -1.19
EDEM3-203ENST00000439962 ADAMTS12P58397 1594 aa7.63□□□□□ -1.19
EDEM3-203ENST00000439962 CEP170Q5SW79 1584 aa7.63□□□□□ -1.19
EDEM3-203ENST00000439962 ERICH3Q5RHP9 1530 aa7.6□□□□□ -1.19
EDEM3-203ENST00000439962 LOC105371045A0A1W2PR82 267 aa7.6□□□□□ -1.19
EDEM3-203ENST00000439962 NPM1P06748 294 aaKnown RBP eCLIP7.6□□□□□ -1.19
EDEM3-203ENST00000439962 KCNH8Q96L42 1107 aa7.58□□□□□ -1.2
EDEM3-203ENST00000439962 RAPGEF2Q9Y4G8 1499 aa7.57□□□□□ -1.2
EDEM3-203ENST00000439962 NUP160Q12769 1436 aa7.57□□□□□ -1.2
EDEM3-203ENST00000439962 CLASP1Q7Z460 1538 aa7.57□□□□□ -1.2
EDEM3-203ENST00000439962 FAM69CQ0P6D2 419 aa7.56□□□□□ -1.2
EDEM3-203ENST00000439962 PTPRGP23470 1445 aa7.55□□□□□ -1.2
EDEM3-203ENST00000439962 KIAA0586Q9BVV6 1533 aa7.53□□□□□ -1.2
EDEM3-203ENST00000439962 CARMIL2Q6F5E8 1435 aa7.51□□□□□ -1.21
EDEM3-203ENST00000439962 CUL7Q14999 1698 aa7.51□□□□□ -1.21
EDEM3-203ENST00000439962 EEA1Q15075 1411 aa7.51□□□□□ -1.21
EDEM3-203ENST00000439962 IQGAP2Q13576 1575 aa7.5□□□□□ -1.21
EDEM3-203ENST00000439962 FHOD3Q2V2M9 1422 aa7.49□□□□□ -1.21
EDEM3-203ENST00000439962 PLB1Q6P1J6 1458 aa7.49□□□□□ -1.21
EDEM3-203ENST00000439962 PRXQ9BXM0 1461 aa7.49□□□□□ -1.21
EDEM3-203ENST00000439962 TNIKQ9UKE5 1360 aa7.48□□□□□ -1.21
EDEM3-203ENST00000439962 HRCP23327 699 aa7.47□□□□□ -1.21
EDEM3-203ENST00000439962 DISP1Q96F81 1524 aa7.46□□□□□ -1.22
EDEM3-203ENST00000439962 PLPPR3Q6T4P5 718 aa7.45□□□□□ -1.22
EDEM3-203ENST00000439962 PPARGC1BQ86YN6 1023 aaKnown RBP7.45□□□□□ -1.22
EDEM3-203ENST00000439962 TSPOAP1O95153 1857 aa7.44□□□□□ -1.22
EDEM3-203ENST00000439962 TRIM26Q12899 539 aaPredicted RBP7.44□□□□□ -1.22
EDEM3-203ENST00000439962 SHROOM2Q13796 1616 aa7.43□□□□□ -1.22
EDEM3-203ENST00000439962 UACAQ9BZF9 1416 aa7.43□□□□□ -1.22
EDEM3-203ENST00000439962 ADCY10Q96PN6 1610 aa7.43□□□□□ -1.22
EDEM3-203ENST00000439962 POTEDQ86YR6 584 aa7.42□□□□□ -1.22
EDEM3-203ENST00000439962 GOLGA3Q08378 1498 aa7.42□□□□□ -1.22
EDEM3-203ENST00000439962 ASXL2Q76L83 1435 aa7.42□□□□□ -1.22
EDEM3-203ENST00000439962 MYT1LQ9UL68 1186 aa7.41□□□□□ -1.22
EDEM3-203ENST00000439962 KIAA0556O60303 1618 aa7.41□□□□□ -1.22
EDEM3-203ENST00000439962 AEBP2Q6ZN18 517 aaPredicted RBP7.4□□□□□ -1.22
EDEM3-203ENST00000439962 CTTNBP2Q8WZ74 1663 aa7.4□□□□□ -1.22
EDEM3-203ENST00000439962 ZNF777Q9ULD5 760 aaPredicted RBP7.39□□□□□ -1.23
EDEM3-203ENST00000439962 KIF21BO75037 1637 aa7.39□□□□□ -1.23
EDEM3-203ENST00000439962 PLEKHD1A6NEE1 506 aa7.39□□□□□ -1.23
EDEM3-203ENST00000439962 UGGT2Q9NYU1 1516 aa7.39□□□□□ -1.23
EDEM3-203ENST00000439962 ABCC2Q92887 1545 aa7.38□□□□□ -1.23
EDEM3-203ENST00000439962 RAPGEF3O95398 923 aa7.38□□□□□ -1.23
EDEM3-203ENST00000439962 ZEB1P37275 1124 aaPredicted RBP7.38□□□□□ -1.23
EDEM3-203ENST00000439962 CLIP1P30622 1438 aa7.36□□□□□ -1.23
EDEM3-203ENST00000439962 CDK13Q14004 1512 aaKnown RBP7.36□□□□□ -1.23
EDEM3-203ENST00000439962 ARHGAP35Q9NRY4 1499 aa7.36□□□□□ -1.23
EDEM3-203ENST00000439962 PCGF6Q9BYE7 350 aa7.35□□□□□ -1.23
EDEM3-203ENST00000439962 ATP10BO94823 1461 aa7.34□□□□□ -1.23
EDEM3-203ENST00000439962 ABCC10Q5T3U5 1492 aa7.34□□□□□ -1.23
EDEM3-203ENST00000439962 MLECQ14165 292 aa7.34□□□□□ -1.23
EDEM3-203ENST00000439962 ARID4BQ4LE39 1312 aaPredicted RBP7.34□□□□□ -1.24
EDEM3-203ENST00000439962 ZCCHC11Q5TAX3 1644 aaKnown RBP7.33□□□□□ -1.24
EDEM3-203ENST00000439962 CEP162Q5TB80 1403 aa7.33□□□□□ -1.24
EDEM3-203ENST00000439962 CD109Q6YHK3 1445 aa7.33□□□□□ -1.24
EDEM3-203ENST00000439962 NUP153P49790 1475 aaKnown RBP7.32□□□□□ -1.24
EDEM3-203ENST00000439962 WDR7Q9Y4E6 1490 aa7.32□□□□□ -1.24
EDEM3-203ENST00000439962 KIF13AQ9H1H9 1805 aa7.31□□□□□ -1.24
EDEM3-203ENST00000439962 DIP2BQ9P265 1576 aa7.31□□□□□ -1.24
EDEM3-203ENST00000439962 CDK11AQ9UQ88 783 aaPredicted RBP7.31□□□□□ -1.24
EDEM3-203ENST00000439962 EPRSP07814 1512 aaKnown RBP7.31□□□□□ -1.24
EDEM3-203ENST00000439962 KDM5BQ9UGL1 1544 aa7.31□□□□□ -1.24
EDEM3-203ENST00000439962 APLP2Q06481 763 aa7.3□□□□□ -1.24
EDEM3-203ENST00000439962 RAPGEF6Q8TEU7 1601 aa7.3□□□□□ -1.24
EDEM3-203ENST00000439962 ABCA8O94911 1581 aa7.29□□□□□ -1.24
EDEM3-203ENST00000439962 COL17A1Q9UMD9 1497 aaPredicted RBP7.29□□□□□ -1.24
EDEM3-203ENST00000439962 FMN1Q68DA7 1419 aa7.29□□□□□ -1.24
EDEM3-203ENST00000439962 SAMD9Q5K651 1589 aa7.29□□□□□ -1.24
EDEM3-203ENST00000439962 AFAP1Q8N556 730 aa7.29□□□□□ -1.24
EDEM3-203ENST00000439962 MAPKBP1O60336 1514 aa7.29□□□□□ -1.24
EDEM3-203ENST00000439962 KANK4Q5T7N3 995 aaPredicted RBP7.28□□□□□ -1.24
EDEM3-203ENST00000439962 UHRF1BP1LA0JNW5 1464 aa7.28□□□□□ -1.24
EDEM3-203ENST00000439962 MTUS2Q5JR59 1369 aa7.27□□□□□ -1.24
EDEM3-203ENST00000439962 ITGAEP38570 1179 aa7.27□□□□□ -1.25
EDEM3-203ENST00000439962 ZNF644Q9H582 1327 aaPredicted RBP7.27□□□□□ -1.25
EDEM3-203ENST00000439962 HNRNPMP52272 730 aaKnown RBP eCLIP7.26□□□□□ -1.25
EDEM3-203ENST00000439962 KDM6BO15054 1643 aa7.26□□□□□ -1.25
EDEM3-203ENST00000439962 PCF11O94913 1555 aaKnown RBP7.25□□□□□ -1.25
EDEM3-203ENST00000439962 EFCAB5A4FU69 1503 aa7.25□□□□□ -1.25
EDEM3-203ENST00000439962 CFDP1Q9UEE9 299 aaPredicted RBP7.25□□□□□ -1.25
EDEM3-203ENST00000439962 KDM4FA0A1W2PPD8 638 aa7.23□□□□□ -1.25
EDEM3-203ENST00000439962 EFCAB2Q5VUJ9 269 aa7.23□□□□□ -1.25
EDEM3-203ENST00000439962 KIF14Q15058 1648 aa7.22□□□□□ -1.25
EDEM3-203ENST00000439962 CHIC2Q9UKJ5 165 aa7.22□□□□□ -1.25
EDEM3-203ENST00000439962 FANCAO15360 1455 aa7.22□□□□□ -1.25
EDEM3-203ENST00000439962 FAM50AQ14320 339 aaKnown RBP7.22□□□□□ -1.25
EDEM3-203ENST00000439962 SCAPERQ9BY12 1400 aa7.21□□□□□ -1.25
EDEM3-203ENST00000439962 TTC37Q6PGP7 1564 aa7.21□□□□□ -1.25
EDEM3-203ENST00000439962 CASKIN1Q8WXD9 1431 aa7.21□□□□□ -1.26
EDEM3-203ENST00000439962 HECW1Q76N89 1606 aa7.21□□□□□ -1.26
EDEM3-203ENST00000439962 ARHGAP5Q13017 1502 aa7.21□□□□□ -1.26
EDEM3-203ENST00000439962 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.21□□□□□ -1.26
EDEM3-203ENST00000439962 CCNB3Q8WWL7 1395 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms