RNA–Protein interactions for RNA: ENST00000439962.1

EDEM3-203, Transcript of ER degradation enhancing alpha-mannosidase like protein 3, humanhuman

TSL 1 (best)

Gene EDEM3, Length 2,872 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EDEM3-203ENST00000439962 NISCHQ9Y2I1 1504 aa10.85□□□□□ -0.67
EDEM3-203ENST00000439962 ABCC9O60706 1549 aa9.7□□□□□ -0.86
EDEM3-203ENST00000439962 DCAF8L2P0C7V8 631 aa9.62□□□□□ -0.87
EDEM3-203ENST00000439962 CCDC180Q9P1Z9 1646 aa9.45□□□□□ -0.9
EDEM3-203ENST00000439962 PABPN1Q86U42 306 aaKnown RBP eCLIP9.2□□□□□ -0.94
EDEM3-203ENST00000439962 RB1CC1Q8TDY2 1594 aa9.05□□□□□ -0.96
EDEM3-203ENST00000439962 SHROOM4Q9ULL8 1493 aa9.02□□□□□ -0.97
EDEM3-203ENST00000439962 ZCCHC6Q5VYS8 1495 aaKnown RBP8.99□□□□□ -0.97
EDEM3-203ENST00000439962 NACADO15069 1562 aa8.98□□□□□ -0.97
EDEM3-203ENST00000439962 DNAJC5BQ9UF47 199 aa8.98□□□□□ -0.97
EDEM3-203ENST00000439962 SCRIBQ14160 1630 aa8.96□□□□□ -0.98
EDEM3-203ENST00000439962 UNC13AQ9UPW8 1703 aa8.84□□□□□ -0.99
EDEM3-203ENST00000439962 BICRAQ9NZM4 1560 aa8.79□□□□□ -1
EDEM3-203ENST00000439962 MYO15BQ96JP2 1530 aa8.77□□□□□ -1.01
EDEM3-203ENST00000439962 DCAF1Q9Y4B6 1507 aa8.77□□□□□ -1.01
EDEM3-203ENST00000439962 CECR2Q9BXF3 1484 aa8.62□□□□□ -1.03
EDEM3-203ENST00000439962 CC2D2AQ9P2K1 1620 aa8.61□□□□□ -1.03
EDEM3-203ENST00000439962 EIF4G1Q04637 1599 aaKnown RBP8.61□□□□□ -1.03
EDEM3-203ENST00000439962 SUPT5HO00267 1087 aaKnown RBP8.5□□□□□ -1.05
EDEM3-203ENST00000439962 MROH2BQ7Z745 1585 aa8.45□□□□□ -1.06
EDEM3-203ENST00000439962 ATAD2BQ9ULI0 1458 aa8.41□□□□□ -1.06
EDEM3-203ENST00000439962 SMARCA4P51532 1647 aa8.41□□□□□ -1.06
EDEM3-203ENST00000439962 BAZ1BQ9UIG0 1483 aaKnown RBP8.39□□□□□ -1.07
EDEM3-203ENST00000439962 BAZ1AQ9NRL2 1556 aaPredicted RBP8.39□□□□□ -1.07
EDEM3-203ENST00000439962 WIZO95785 1651 aa8.37□□□□□ -1.07
EDEM3-203ENST00000439962 NESP48681 1621 aa8.37□□□□□ -1.07
EDEM3-203ENST00000439962 RSF1Q96T23 1441 aaPredicted RBP8.34□□□□□ -1.07
EDEM3-203ENST00000439962 ERCC6Q03468 1493 aa8.34□□□□□ -1.07
EDEM3-203ENST00000439962 NCAPD3P42695 1498 aa8.33□□□□□ -1.08
EDEM3-203ENST00000439962 SMARCA2P51531 1590 aa8.33□□□□□ -1.08
EDEM3-203ENST00000439962 HMGXB3Q12766 1538 aa8.23□□□□□ -1.09
EDEM3-203ENST00000439962 CADPSQ9ULU8 1353 aa8.2□□□□□ -1.1
EDEM3-203ENST00000439962 PEG3Q9GZU2 1588 aa8.18□□□□□ -1.1
EDEM3-203ENST00000439962 CCDC88BA6NC98 1476 aa8.18□□□□□ -1.1
EDEM3-203ENST00000439962 PDS5BQ9NTI5 1447 aa8.15□□□□□ -1.1
EDEM3-203ENST00000439962 TOP2AP11388 1531 aaKnown RBP8.15□□□□□ -1.1
EDEM3-203ENST00000439962 KIF21AQ7Z4S6 1674 aa8.13□□□□□ -1.11
EDEM3-203ENST00000439962 FANCD2Q9BXW9 1451 aa8.12□□□□□ -1.11
EDEM3-203ENST00000439962 FBLN2P98095 1184 aa8.1□□□□□ -1.11
EDEM3-203ENST00000439962 CEP164Q9UPV0 1460 aa8.1□□□□□ -1.11
EDEM3-203ENST00000439962 LAMC3Q9Y6N6 1575 aa8.1□□□□□ -1.11
EDEM3-203ENST00000439962 CFTRP13569 1480 aa8.08□□□□□ -1.12
EDEM3-203ENST00000439962 MRC2Q9UBG0 1479 aa8.04□□□□□ -1.12
EDEM3-203ENST00000439962 URB2Q14146 1524 aaKnown RBP8.02□□□□□ -1.12
EDEM3-203ENST00000439962 EHMT2Q96KQ7 1210 aa8.02□□□□□ -1.13
EDEM3-203ENST00000439962 THOC2Q8NI27 1593 aaKnown RBP8.02□□□□□ -1.13
EDEM3-203ENST00000439962 CUX2O14529 1486 aa8.01□□□□□ -1.13
EDEM3-203ENST00000439962 TRIM41Q8WV44 630 aa8□□□□□ -1.13
EDEM3-203ENST00000439962 TDRD9Q8NDG6 1382 aaKnown RBP8□□□□□ -1.13
EDEM3-203ENST00000439962 RAD54L2Q9Y4B4 1467 aa7.99□□□□□ -1.13
EDEM3-203ENST00000439962 ZNF608Q9ULD9 1512 aaPredicted RBP7.98□□□□□ -1.13
EDEM3-203ENST00000439962 DNAJC5Q9H3Z4 198 aa7.98□□□□□ -1.13
EDEM3-203ENST00000439962 AQRO60306 1485 aaKnown RBP eCLIP7.98□□□□□ -1.13
EDEM3-203ENST00000439962 ABCC8Q09428 1581 aa7.98□□□□□ -1.13
EDEM3-203ENST00000439962 TOPBP1Q92547 1522 aa7.96□□□□□ -1.14
EDEM3-203ENST00000439962 TTBK1Q5TCY1 1321 aaPredicted RBP7.95□□□□□ -1.14
EDEM3-203ENST00000439962 WDR62O43379 1518 aa7.94□□□□□ -1.14
EDEM3-203ENST00000439962 FAM9AQ8IZU1 332 aaPredicted RBP7.94□□□□□ -1.14
EDEM3-203ENST00000439962 SOGA1O94964 1423 aa7.93□□□□□ -1.14
EDEM3-203ENST00000439962 FGD5Q6ZNL6 1462 aa7.92□□□□□ -1.14
EDEM3-203ENST00000439962 OSCARQ8IYS5 282 aa7.92□□□□□ -1.14
EDEM3-203ENST00000439962 CHMP7Q8WUX9 453 aaPredicted RBP7.92□□□□□ -1.14
EDEM3-203ENST00000439962 POLA1P09884 1462 aaPredicted RBP7.91□□□□□ -1.14
EDEM3-203ENST00000439962 CUX1P39880 1505 aa7.9□□□□□ -1.14
EDEM3-203ENST00000439962 RANGAP1P46060 587 aaPredicted RBP7.9□□□□□ -1.15
EDEM3-203ENST00000439962 WRNQ14191 1432 aaPredicted RBP eCLIP7.89□□□□□ -1.15
EDEM3-203ENST00000439962 DNMBPQ6XZF7 1577 aa7.88□□□□□ -1.15
EDEM3-203ENST00000439962 CYB5RLQ6IPT4 315 aa7.87□□□□□ -1.15
EDEM3-203ENST00000439962 IFT140Q96RY7 1462 aa7.86□□□□□ -1.15
EDEM3-203ENST00000439962 PRDM2Q13029 1718 aa7.85□□□□□ -1.15
EDEM3-203ENST00000439962 SYNJ1O43426 1573 aa7.84□□□□□ -1.15
EDEM3-203ENST00000439962 EIF4G3O43432 1585 aaKnown RBP7.83□□□□□ -1.16
EDEM3-203ENST00000439962 SNAPC4Q5SXM2 1469 aa7.82□□□□□ -1.16
EDEM3-203ENST00000439962 GAPVD1Q14C86 1478 aa7.8□□□□□ -1.16
EDEM3-203ENST00000439962 CHIC1Q5VXU3 224 aa7.8□□□□□ -1.16
EDEM3-203ENST00000439962 TARBP1Q13395 1621 aaKnown RBP7.79□□□□□ -1.16
EDEM3-203ENST00000439962 TRHP20396 242 aaPredicted RBP7.78□□□□□ -1.16
EDEM3-203ENST00000439962 RUSC2Q8N2Y8 1516 aa7.76□□□□□ -1.17
EDEM3-203ENST00000439962 GRIN2BQ13224 1484 aa7.76□□□□□ -1.17
EDEM3-203ENST00000439962 ARID3CA6NKF2 412 aa7.75□□□□□ -1.17
EDEM3-203ENST00000439962 TOP2BQ02880 1626 aa7.75□□□□□ -1.17
EDEM3-203ENST00000439962 CHD1O14646 1710 aa7.74□□□□□ -1.17
EDEM3-203ENST00000439962 P3H3Q8IVL6 736 aa7.74□□□□□ -1.17
EDEM3-203ENST00000439962 ABCA10Q8WWZ4 1543 aa7.73□□□□□ -1.17
EDEM3-203ENST00000439962 KIF27Q86VH2 1401 aa7.71□□□□□ -1.18
EDEM3-203ENST00000439962 IGF1RP08069 1367 aa7.7□□□□□ -1.18
EDEM3-203ENST00000439962 SYNJ2O15056 1496 aa7.7□□□□□ -1.18
EDEM3-203ENST00000439962 JPH4Q96JJ6 628 aa7.69□□□□□ -1.18
EDEM3-203ENST00000439962 ARHGEF11O15085 1522 aa7.69□□□□□ -1.18
EDEM3-203ENST00000439962 BIVM-ERCC5R4GMW8 1640 aa7.69□□□□□ -1.18
EDEM3-203ENST00000439962 CARMIL1Q5VZK9 1371 aa7.69□□□□□ -1.18
EDEM3-203ENST00000439962 PBRM1Q86U86 1689 aa7.68□□□□□ -1.18
EDEM3-203ENST00000439962 MAGI1Q96QZ7 1491 aaPredicted RBP7.68□□□□□ -1.18
EDEM3-203ENST00000439962 UBTFP17480 764 aaKnown RBP7.68□□□□□ -1.18
EDEM3-203ENST00000439962 ATP1B4Q9UN42 357 aaPredicted RBP7.67□□□□□ -1.18
EDEM3-203ENST00000439962 GRIN2AQ12879 1464 aa7.67□□□□□ -1.18
EDEM3-203ENST00000439962 RIMBP3CA6NJZ7 1639 aa7.67□□□□□ -1.18
EDEM3-203ENST00000439962 RIMBP3BA6NNM3 1639 aa7.67□□□□□ -1.18
EDEM3-203ENST00000439962 RIMBP3Q9UFD9 1639 aa7.67□□□□□ -1.18
EDEM3-203ENST00000439962 FHAD1B1AJZ9 1412 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms