RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 GAPVD1Q14C86 1478 aa27.75■■■□□ 2.03
CLK1-205ENST00000434813 TARBP1Q13395 1621 aaKnown RBP27.75■■■□□ 2.03
CLK1-205ENST00000434813 ABCA5Q8WWZ7 1642 aa27.75■■■□□ 2.03
CLK1-205ENST00000434813 WDR62O43379 1518 aa27.74■■■□□ 2.03
CLK1-205ENST00000434813 DIEXFQ68CQ4 756 aaKnown RBP27.74■■■□□ 2.03
CLK1-205ENST00000434813 FHAD1B1AJZ9 1412 aa27.68■■■□□ 2.02
CLK1-205ENST00000434813 CCNB3Q8WWL7 1395 aa27.67■■■□□ 2.02
CLK1-205ENST00000434813 ZNF316A6NFI3 1004 aaPredicted RBP27.67■■■□□ 2.02
CLK1-205ENST00000434813 CLSPNQ9HAW4 1339 aa27.66■■■□□ 2.02
CLK1-205ENST00000434813 CFAP43Q8NDM7 1665 aa27.66■■■□□ 2.02
CLK1-205ENST00000434813 EFCAB5A4FU69 1503 aa27.66■■■□□ 2.02
CLK1-205ENST00000434813 CTTNBP2Q8WZ74 1663 aa27.65■■■□□ 2.02
CLK1-205ENST00000434813 IFT140Q96RY7 1462 aa27.63■■■□□ 2.01
CLK1-205ENST00000434813 DHX57Q6P158 1386 aaKnown RBP27.62■■■□□ 2.01
CLK1-205ENST00000434813 PCF11O94913 1555 aaKnown RBP27.62■■■□□ 2.01
CLK1-205ENST00000434813 LRRC9Q6ZRR7 1453 aa27.6■■■□□ 2.01
CLK1-205ENST00000434813 AQRO60306 1485 aaKnown RBP eCLIP27.55■■■□□ 29e-8■■■□□ 15.7
CLK1-205ENST00000434813 FYCO1Q9BQS8 1478 aa27.53■■■□□ 2
CLK1-205ENST00000434813 PBRM1Q86U86 1689 aa27.51■■■□□ 2
CLK1-205ENST00000434813 FHOD3Q2V2M9 1422 aa27.5■■□□□ 1.99
CLK1-205ENST00000434813 GRIN2BQ13224 1484 aa27.49■■□□□ 1.99
CLK1-205ENST00000434813 ZNF608Q9ULD9 1512 aaPredicted RBP27.47■■□□□ 1.99
CLK1-205ENST00000434813 CASKIN1Q8WXD9 1431 aa27.46■■□□□ 1.99
CLK1-205ENST00000434813 PHLDB1Q86UU1 1377 aa27.43■■□□□ 1.98
CLK1-205ENST00000434813 SAMD9Q5K651 1589 aa27.41■■□□□ 1.98
CLK1-205ENST00000434813 SCAF1Q9H7N4 1312 aaKnown RBP27.4■■□□□ 1.98
CLK1-205ENST00000434813 ADAMTS12P58397 1594 aa27.39■■□□□ 1.98
CLK1-205ENST00000434813 FMN1Q68DA7 1419 aa27.39■■□□□ 1.98
CLK1-205ENST00000434813 P3H3Q8IVL6 736 aa27.39■■□□□ 1.98
CLK1-205ENST00000434813 EIF4G3O43432 1585 aaKnown RBP27.37■■□□□ 1.97
CLK1-205ENST00000434813 SNAPC4Q5SXM2 1469 aa27.37■■□□□ 1.97
CLK1-205ENST00000434813 ACIN1Q9UKV3 1341 aaKnown RBP27.34■■□□□ 1.97
CLK1-205ENST00000434813 RAB3GAP2Q9H2M9 1393 aa27.32■■□□□ 1.96
CLK1-205ENST00000434813 ITGAEP38570 1179 aa27.29■■□□□ 1.96
CLK1-205ENST00000434813 CENPBP07199 599 aaPredicted RBP27.28■■□□□ 1.96
CLK1-205ENST00000434813 SETD5Q9C0A6 1442 aa27.27■■□□□ 1.96
CLK1-205ENST00000434813 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.27■■□□□ 1.96
CLK1-205ENST00000434813 MAPKBP1O60336 1514 aa27.25■■□□□ 1.95
CLK1-205ENST00000434813 NEUROD1Q13562 356 aa27.25■■□□□ 1.95
CLK1-205ENST00000434813 ATP1B4Q9UN42 357 aaPredicted RBP27.23■■□□□ 1.95
CLK1-205ENST00000434813 MAGI1Q96QZ7 1491 aaPredicted RBP27.22■■□□□ 1.95
CLK1-205ENST00000434813 LRRIQ1Q96JM4 1722 aa27.21■■□□□ 1.95
CLK1-205ENST00000434813 IQGAP2Q13576 1575 aa27.18■■□□□ 1.94
CLK1-205ENST00000434813 FAM50AQ14320 339 aaKnown RBP27.17■■□□□ 1.94
CLK1-205ENST00000434813 GRIN2AQ12879 1464 aa27.15■■□□□ 1.94
CLK1-205ENST00000434813 FGD6Q6ZV73 1430 aa27.15■■□□□ 1.94
CLK1-205ENST00000434813 MIER1Q8N108 512 aa27.13■■□□□ 1.93
CLK1-205ENST00000434813 CHMP7Q8WUX9 453 aaPredicted RBP27.13■■□□□ 1.93
CLK1-205ENST00000434813 SYNJ2O15056 1496 aa27.13■■□□□ 1.93
CLK1-205ENST00000434813 MTUS2Q5JR59 1369 aa27.11■■□□□ 1.93
CLK1-205ENST00000434813 EHBP1L1Q8N3D4 1523 aa27.11■■□□□ 1.93
CLK1-205ENST00000434813 KIAA0586Q9BVV6 1533 aa27.08■■□□□ 1.93
CLK1-205ENST00000434813 SUPT6HQ7KZ85 1726 aaKnown RBP27.08■■□□□ 1.92
CLK1-205ENST00000434813 FBLN2P98095 1184 aa27.07■■□□□ 1.92
CLK1-205ENST00000434813 CCDC18Q5T9S5 1454 aa27.06■■□□□ 1.92
CLK1-205ENST00000434813 NCOA2Q15596 1464 aa27.05■■□□□ 1.92
CLK1-205ENST00000434813 HECW1Q76N89 1606 aa27.03■■□□□ 1.92
CLK1-205ENST00000434813 MYOM3Q5VTT5 1437 aa27.02■■□□□ 1.92
CLK1-205ENST00000434813 UGGT2Q9NYU1 1516 aa27.02■■□□□ 1.92
CLK1-205ENST00000434813 ARHGEF11O15085 1522 aa27.01■■□□□ 1.91
CLK1-205ENST00000434813 MAGI3Q5TCQ9 1506 aa26.96■■□□□ 1.91
CLK1-205ENST00000434813 HFM1A2PYH4 1435 aa26.95■■□□□ 1.9
CLK1-205ENST00000434813 CEP170Q5SW79 1584 aa26.95■■□□□ 1.9
CLK1-205ENST00000434813 PTPN23Q9H3S7 1636 aa26.93■■□□□ 1.9
CLK1-205ENST00000434813 NUP160Q12769 1436 aa26.92■■□□□ 1.9
CLK1-205ENST00000434813 GTF3C3Q9Y5Q9 886 aa26.92■■□□□ 1.9
CLK1-205ENST00000434813 PTPRKQ15262 1439 aa26.91■■□□□ 1.9
CLK1-205ENST00000434813 YTHDC1Q96MU7 727 aaKnown RBP26.9■■□□□ 1.9
CLK1-205ENST00000434813 TIMELESSQ9UNS1 1208 aa26.89■■□□□ 1.9
CLK1-205ENST00000434813 EPRSP07814 1512 aaKnown RBP26.89■■□□□ 1.9
CLK1-205ENST00000434813 KIAA0556O60303 1618 aa26.88■■□□□ 1.89
CLK1-205ENST00000434813 DISP1Q96F81 1524 aa26.87■■□□□ 1.89
CLK1-205ENST00000434813 TCOF1Q13428 1488 aaKnown RBP26.86■■□□□ 1.89
CLK1-205ENST00000434813 UACAQ9BZF9 1416 aa26.84■■□□□ 1.89
CLK1-205ENST00000434813 NAIPQ13075 1403 aa26.83■■□□□ 1.89
CLK1-205ENST00000434813 SIN3AQ96ST3 1273 aa26.82■■□□□ 1.88
CLK1-205ENST00000434813 CDK13Q14004 1512 aaKnown RBP26.8■■□□□ 1.88
CLK1-205ENST00000434813 JPH4Q96JJ6 628 aa26.8■■□□□ 1.88
CLK1-205ENST00000434813 CARMIL2Q6F5E8 1435 aa26.79■■□□□ 1.88
CLK1-205ENST00000434813 GCC2Q8IWJ2 1684 aa26.78■■□□□ 1.88
CLK1-205ENST00000434813 AKNAQ7Z591 1439 aa26.75■■□□□ 1.87
CLK1-205ENST00000434813 MIA2Q96PC5 1412 aa26.75■■□□□ 1.87
CLK1-205ENST00000434813 CHD1O14646 1710 aa26.7■■□□□ 1.87
CLK1-205ENST00000434813 OSCARQ8IYS5 282 aa26.7■■□□□ 1.86
CLK1-205ENST00000434813 RAPGEF6Q8TEU7 1601 aa26.68■■□□□ 1.86
CLK1-205ENST00000434813 PPP1R15AO75807 674 aaPredicted RBP26.66■■□□□ 1.86
CLK1-205ENST00000434813 NUP153P49790 1475 aaKnown RBP26.66■■□□□ 1.86
CLK1-205ENST00000434813 PELP1Q8IZL8 1130 aaKnown RBP26.65■■□□□ 1.86
CLK1-205ENST00000434813 ARID3CA6NKF2 412 aa26.63■■□□□ 1.85
CLK1-205ENST00000434813 TONSLQ96HA7 1378 aa26.62■■□□□ 1.85
CLK1-205ENST00000434813 PRG4Q92954 1404 aaPredicted RBP26.58■■□□□ 1.85
CLK1-205ENST00000434813 PLB1Q6P1J6 1458 aa26.57■■□□□ 1.84
CLK1-205ENST00000434813 CDK11AQ9UQ88 783 aaPredicted RBP26.56■■□□□ 1.84
CLK1-205ENST00000434813 KDM6BO15054 1643 aa26.55■■□□□ 1.84
CLK1-205ENST00000434813 DNMT1P26358 1616 aaKnown RBP26.55■■□□□ 1.84
CLK1-205ENST00000434813 KDM5BQ9UGL1 1544 aa26.54■■□□□ 1.84
CLK1-205ENST00000434813 DENND4BO75064 1496 aaPredicted RBP26.53■■□□□ 1.84
CLK1-205ENST00000434813 RRP7BPQ9NSQ0 103 aa26.53■■□□□ 1.84
CLK1-205ENST00000434813 ROCK1Q13464 1354 aa26.51■■□□□ 1.83
CLK1-205ENST00000434813 DAPK1P53355 1430 aa26.51■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms