RNA–Protein interactions for RNA: ENST00000431640.5

DDX56-204, Transcript of DEAD-box helicase 56, humanhuman

TSL 1 (best) BASIC

Gene DDX56, Length 1,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-204ENST00000431640 GRIN2AQ12879 1464 aa20.04■□□□□ 0.8
DDX56-204ENST00000431640 CEP170Q5SW79 1584 aa20■□□□□ 0.79
DDX56-204ENST00000431640 CTTNBP2Q8WZ74 1663 aa19.99■□□□□ 0.79
DDX56-204ENST00000431640 NUP160Q12769 1436 aa19.93■□□□□ 0.78
DDX56-204ENST00000431640 CHMP7Q8WUX9 453 aaPredicted RBP19.91■□□□□ 0.78
DDX56-204ENST00000431640 FBLN2P98095 1184 aa19.9■□□□□ 0.78
DDX56-204ENST00000431640 ZEB1P37275 1124 aaPredicted RBP19.87■□□□□ 0.77
DDX56-204ENST00000431640 IQGAP2Q13576 1575 aa19.86■□□□□ 0.77
DDX56-204ENST00000431640 CLASP1Q7Z460 1538 aa19.84■□□□□ 0.77
DDX56-204ENST00000431640 KIAA0586Q9BVV6 1533 aa19.83■□□□□ 0.77
DDX56-204ENST00000431640 CLIP1P30622 1438 aa19.81■□□□□ 0.76
DDX56-204ENST00000431640 PPARGC1BQ86YN6 1023 aaKnown RBP19.78■□□□□ 0.76
DDX56-204ENST00000431640 SAMD9Q5K651 1589 aa19.77■□□□□ 0.76
DDX56-204ENST00000431640 SHROOM2Q13796 1616 aa19.77■□□□□ 0.75
DDX56-204ENST00000431640 ARHGAP35Q9NRY4 1499 aa19.76■□□□□ 0.75
DDX56-204ENST00000431640 UGGT2Q9NYU1 1516 aa19.76■□□□□ 0.75
DDX56-204ENST00000431640 RANGAP1P46060 587 aaPredicted RBP19.74■□□□□ 0.75
DDX56-204ENST00000431640 ARAP1Q96P48 1450 aa19.73■□□□□ 0.75
DDX56-204ENST00000431640 DISP1Q96F81 1524 aa19.72■□□□□ 0.75
DDX56-204ENST00000431640 ERCC6L2Q5T890 1561 aa19.71■□□□□ 0.75
DDX56-204ENST00000431640 KIAA0556O60303 1618 aa19.7■□□□□ 0.74
DDX56-204ENST00000431640 VPS8Q8N3P4 1428 aa19.7■□□□□ 0.74
DDX56-204ENST00000431640 EFCAB5A4FU69 1503 aa19.7■□□□□ 0.74
DDX56-204ENST00000431640 FHOD3Q2V2M9 1422 aa19.66■□□□□ 0.74
DDX56-204ENST00000431640 APLP2Q06481 763 aa19.66■□□□□ 0.74
DDX56-204ENST00000431640 JPH4Q96JJ6 628 aa19.62■□□□□ 0.73
DDX56-204ENST00000431640 OSCARQ8IYS5 282 aa19.61■□□□□ 0.73
DDX56-204ENST00000431640 PRG4Q92954 1404 aaPredicted RBP19.61■□□□□ 0.73
DDX56-204ENST00000431640 P3H3Q8IVL6 736 aa19.6■□□□□ 0.73
DDX56-204ENST00000431640 PCF11O94913 1555 aaKnown RBP19.55■□□□□ 0.72
DDX56-204ENST00000431640 TTBK1Q5TCY1 1321 aaPredicted RBP19.51■□□□□ 0.71
DDX56-204ENST00000431640 CARMIL2Q6F5E8 1435 aa19.51■□□□□ 0.71
DDX56-204ENST00000431640 LRRIQ1Q96JM4 1722 aa19.49■□□□□ 0.71
DDX56-204ENST00000431640 ARHGEF11O15085 1522 aa19.48■□□□□ 0.71
DDX56-204ENST00000431640 CCER1Q8TC90 406 aaPredicted RBP19.45■□□□□ 0.7
DDX56-204ENST00000431640 RIMBP3CA6NJZ7 1639 aa19.45■□□□□ 0.7
DDX56-204ENST00000431640 RIMBP3BA6NNM3 1639 aa19.45■□□□□ 0.7
DDX56-204ENST00000431640 RIMBP3Q9UFD9 1639 aa19.45■□□□□ 0.7
DDX56-204ENST00000431640 PLB1Q6P1J6 1458 aa19.45■□□□□ 0.7
DDX56-204ENST00000431640 ABCA8O94911 1581 aa19.44■□□□□ 0.7
DDX56-204ENST00000431640 FMN1Q68DA7 1419 aa19.44■□□□□ 0.7
DDX56-204ENST00000431640 RAPGEF6Q8TEU7 1601 aa19.43■□□□□ 0.7
DDX56-204ENST00000431640 FYCO1Q9BQS8 1478 aa19.41■□□□□ 0.7
DDX56-204ENST00000431640 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.4■□□□□ 0.7
DDX56-204ENST00000431640 CASKIN1Q8WXD9 1431 aa19.4■□□□□ 0.7
DDX56-204ENST00000431640 PTPRGP23470 1445 aa19.39■□□□□ 0.69
DDX56-204ENST00000431640 NUP153P49790 1475 aaKnown RBP19.38■□□□□ 0.69
DDX56-204ENST00000431640 HECW1Q76N89 1606 aa19.38■□□□□ 0.69
DDX56-204ENST00000431640 CFAP43Q8NDM7 1665 aa19.37■□□□□ 0.69
DDX56-204ENST00000431640 ADCY10Q96PN6 1610 aa19.35■□□□□ 0.69
DDX56-204ENST00000431640 CDK13Q14004 1512 aaKnown RBP19.34■□□□□ 0.69
DDX56-204ENST00000431640 ABCC2Q92887 1545 aa19.33■□□□□ 0.68
DDX56-204ENST00000431640 TIAM1Q13009 1591 aa19.33■□□□□ 0.68
DDX56-204ENST00000431640 UACAQ9BZF9 1416 aa19.32■□□□□ 0.68
DDX56-204ENST00000431640 MAP3K1Q13233 1512 aa19.32■□□□□ 0.68
DDX56-204ENST00000431640 EPRSP07814 1512 aaKnown RBP19.3■□□□□ 0.68
DDX56-204ENST00000431640 MAGI3Q5TCQ9 1506 aa19.29■□□□□ 0.68
DDX56-204ENST00000431640 UHRF1BP1LA0JNW5 1464 aa19.28■□□□□ 0.68
DDX56-204ENST00000431640 ARID3CA6NKF2 412 aa19.26■□□□□ 0.67
DDX56-204ENST00000431640 KANK4Q5T7N3 995 aaPredicted RBP19.26■□□□□ 0.67
DDX56-204ENST00000431640 ZCCHC11Q5TAX3 1644 aaKnown RBP19.25■□□□□ 0.67
DDX56-204ENST00000431640 HNRNPUL2Q1KMD3 747 aaKnown RBP19.25■□□□□ 0.67
DDX56-204ENST00000431640 ATP10BO94823 1461 aa19.24■□□□□ 0.67
DDX56-204ENST00000431640 CCDC18Q5T9S5 1454 aa19.24■□□□□ 0.67
DDX56-204ENST00000431640 ATP1B4Q9UN42 357 aaPredicted RBP19.23■□□□□ 0.67
DDX56-204ENST00000431640 KDM5BQ9UGL1 1544 aa19.21■□□□□ 0.67
DDX56-204ENST00000431640 RRBP1Q9P2E9 1410 aaKnown RBP19.2■□□□□ 0.66
DDX56-204ENST00000431640 LRRC9Q6ZRR7 1453 aa19.19■□□□□ 0.66
DDX56-204ENST00000431640 EHBP1L1Q8N3D4 1523 aa19.15■□□□□ 0.66
DDX56-204ENST00000431640 CYB5RLQ6IPT4 315 aa19.15■□□□□ 0.66
DDX56-204ENST00000431640 KIF14Q15058 1648 aa19.13■□□□□ 0.65
DDX56-204ENST00000431640 DNAJC5Q9H3Z4 198 aa19.12■□□□□ 0.65
DDX56-204ENST00000431640 CCNB3Q8WWL7 1395 aa19.12■□□□□ 0.65
DDX56-204ENST00000431640 TROQ12816 1431 aaPredicted RBP19.09■□□□□ 0.65
DDX56-204ENST00000431640 MTUS2Q5JR59 1369 aa19.07■□□□□ 0.64
DDX56-204ENST00000431640 CLSPNQ9HAW4 1339 aa19.07■□□□□ 0.64
DDX56-204ENST00000431640 SUPT6HQ7KZ85 1726 aaKnown RBP19.06■□□□□ 0.64
DDX56-204ENST00000431640 NCOA2Q15596 1464 aa19.04■□□□□ 0.64
DDX56-204ENST00000431640 ASXL2Q76L83 1435 aa19.03■□□□□ 0.64
DDX56-204ENST00000431640 WDR7Q9Y4E6 1490 aa19.03■□□□□ 0.64
DDX56-204ENST00000431640 MAPKBP1O60336 1514 aa19.03■□□□□ 0.64
DDX56-204ENST00000431640 TTC37Q6PGP7 1564 aa19.02■□□□□ 0.64
DDX56-204ENST00000431640 PHLDB1Q86UU1 1377 aa19.02■□□□□ 0.64
DDX56-204ENST00000431640 ABCC10Q5T3U5 1492 aa19.01■□□□□ 0.63
DDX56-204ENST00000431640 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.99■□□□□ 0.63
DDX56-204ENST00000431640 CDC42BPAQ5VT25 1732 aa18.97■□□□□ 0.63
DDX56-204ENST00000431640 PLEKHD1A6NEE1 506 aa18.96■□□□□ 0.63
DDX56-204ENST00000431640 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.95■□□□□ 0.62
DDX56-204ENST00000431640 CDK11AQ9UQ88 783 aaPredicted RBP18.94■□□□□ 0.62
DDX56-204ENST00000431640 ABCA9Q8IUA7 1624 aa18.93■□□□□ 0.62
DDX56-204ENST00000431640 DHX57Q6P158 1386 aaKnown RBP18.92■□□□□ 0.62
DDX56-204ENST00000431640 PREX2Q70Z35 1606 aa18.92■□□□□ 0.62
DDX56-204ENST00000431640 DIP2BQ9P265 1576 aa18.92■□□□□ 0.62
DDX56-204ENST00000431640 MYOM3Q5VTT5 1437 aa18.91■□□□□ 0.62
DDX56-204ENST00000431640 CDC42BPBQ9Y5S2 1711 aa18.91■□□□□ 0.62
DDX56-204ENST00000431640 ITSN2Q9NZM3 1697 aa18.91■□□□□ 0.62
DDX56-204ENST00000431640 GPATCH8Q9UKJ3 1502 aaKnown RBP18.9■□□□□ 0.62
DDX56-204ENST00000431640 NPM1P06748 294 aaKnown RBP eCLIP18.9■□□□□ 0.62
DDX56-204ENST00000431640 MYO5CQ9NQX4 1742 aa18.9■□□□□ 0.62
DDX56-204ENST00000431640 ZNF316A6NFI3 1004 aaPredicted RBP18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms