RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 TSPY10P0CW01 314 aa15.95■□□□□ 0.14
PTCH1-208ENST00000430669 FANCD2Q9BXW9 1451 aa15.95■□□□□ 0.14
PTCH1-208ENST00000430669 PEG3Q9GZU2 1588 aa15.93■□□□□ 0.14
PTCH1-208ENST00000430669 CC2D2AQ9P2K1 1620 aa15.93■□□□□ 0.14
PTCH1-208ENST00000430669 CCNB3Q8WWL7 1395 aa15.92■□□□□ 0.14
PTCH1-208ENST00000430669 BICRAQ9NZM4 1560 aa15.91■□□□□ 0.14
PTCH1-208ENST00000430669 ERICH3Q5RHP9 1530 aa15.91■□□□□ 0.14
PTCH1-208ENST00000430669 PLEKHD1A6NEE1 506 aa15.89■□□□□ 0.13
PTCH1-208ENST00000430669 CARMIL2Q6F5E8 1435 aa15.88■□□□□ 0.13
PTCH1-208ENST00000430669 SYNJ1O43426 1573 aa15.83■□□□□ 0.12
PTCH1-208ENST00000430669 CNGB1Q14028 1251 aaPredicted RBP15.83■□□□□ 0.12
PTCH1-208ENST00000430669 CUL7Q14999 1698 aa15.81■□□□□ 0.12
PTCH1-208ENST00000430669 ESF1Q9H501 851 aaKnown RBP15.81■□□□□ 0.12
PTCH1-208ENST00000430669 FGD5Q6ZNL6 1462 aa15.79■□□□□ 0.12
PTCH1-208ENST00000430669 CHIC2Q9UKJ5 165 aa15.79■□□□□ 0.12
PTCH1-208ENST00000430669 NEFMP07197 916 aa15.78■□□□□ 0.12
PTCH1-208ENST00000430669 BIVM-ERCC5R4GMW8 1640 aa15.78■□□□□ 0.12
PTCH1-208ENST00000430669 CFTRP13569 1480 aa15.77■□□□□ 0.12
PTCH1-208ENST00000430669 CFDP1Q9UEE9 299 aaPredicted RBP15.77■□□□□ 0.12
PTCH1-208ENST00000430669 LAMC3Q9Y6N6 1575 aa15.77■□□□□ 0.11
PTCH1-208ENST00000430669 CUX1P39880 1505 aa15.77■□□□□ 0.11
PTCH1-208ENST00000430669 CCDC18Q5T9S5 1454 aa15.77■□□□□ 0.11
PTCH1-208ENST00000430669 GTF3C3Q9Y5Q9 886 aa15.75■□□□□ 0.11
PTCH1-208ENST00000430669 DNMBPQ6XZF7 1577 aa15.75■□□□□ 0.11
PTCH1-208ENST00000430669 SETD5Q9C0A6 1442 aa15.74■□□□□ 0.11
PTCH1-208ENST00000430669 GAPVD1Q14C86 1478 aa15.73■□□□□ 0.11
PTCH1-208ENST00000430669 TIMELESSQ9UNS1 1208 aa15.72■□□□□ 0.11
PTCH1-208ENST00000430669 EFCAB5A4FU69 1503 aa15.71■□□□□ 0.11
PTCH1-208ENST00000430669 EIF4G2P78344 907 aaKnown RBP eCLIP15.7■□□□□ 0.14e-7■□□□□ 8.6
PTCH1-208ENST00000430669 RRP7BPQ9NSQ0 103 aa15.69■□□□□ 0.1
PTCH1-208ENST00000430669 BCANQ96GW7 911 aa15.68■□□□□ 0.1
PTCH1-208ENST00000430669 STAG3Q9UJ98 1225 aa15.67■□□□□ 0.1
PTCH1-208ENST00000430669 CTTNBP2Q8WZ74 1663 aa15.67■□□□□ 0.1
PTCH1-208ENST00000430669 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.67■□□□□ 0.1
PTCH1-208ENST00000430669 SUPT6HQ7KZ85 1726 aaKnown RBP15.66■□□□□ 0.1
PTCH1-208ENST00000430669 RUSC2Q8N2Y8 1516 aa15.65■□□□□ 0.1
PTCH1-208ENST00000430669 TDRD9Q8NDG6 1382 aaKnown RBP15.64■□□□□ 0.09
PTCH1-208ENST00000430669 DDX10Q13206 875 aaKnown RBP15.63■□□□□ 0.09
PTCH1-208ENST00000430669 SLC24A1O60721 1099 aa15.63■□□□□ 0.09
PTCH1-208ENST00000430669 KANK1Q14678 1352 aa15.61■□□□□ 0.09
PTCH1-208ENST00000430669 CANXP27824 592 aaKnown RBP15.61■□□□□ 0.09
PTCH1-208ENST00000430669 CDCA8Q53HL2 280 aa15.6■□□□□ 0.09
PTCH1-208ENST00000430669 HECW1Q76N89 1606 aa15.6■□□□□ 0.09
PTCH1-208ENST00000430669 FYCO1Q9BQS8 1478 aa15.6■□□□□ 0.09
PTCH1-208ENST00000430669 ZBTB47Q9UFB7 747 aaPredicted RBP15.59■□□□□ 0.09
PTCH1-208ENST00000430669 MRC2Q9UBG0 1479 aa15.58■□□□□ 0.09
PTCH1-208ENST00000430669 FHOD3Q2V2M9 1422 aa15.58■□□□□ 0.08
PTCH1-208ENST00000430669 KCNH8Q96L42 1107 aa15.58■□□□□ 0.08
PTCH1-208ENST00000430669 TMC1Q8TDI8 760 aa15.58■□□□□ 0.08
PTCH1-208ENST00000430669 CHGAP10645 457 aaKnown RBP15.57■□□□□ 0.08
PTCH1-208ENST00000430669 TOPBP1Q92547 1522 aa15.55■□□□□ 0.08
PTCH1-208ENST00000430669 RTL5Q5HYW3 569 aaPredicted RBP15.55■□□□□ 0.08
PTCH1-208ENST00000430669 KIF21AQ7Z4S6 1674 aa15.54■□□□□ 0.08
PTCH1-208ENST00000430669 GRIN2BQ13224 1484 aa15.54■□□□□ 0.08
PTCH1-208ENST00000430669 HNRNPUQ00839 825 aaKnown RBP eCLIP15.54■□□□□ 0.08
PTCH1-208ENST00000430669 KDM2AQ9Y2K7 1162 aa15.52■□□□□ 0.08
PTCH1-208ENST00000430669 RAB3GAP2Q9H2M9 1393 aa15.52■□□□□ 0.08
PTCH1-208ENST00000430669 ANKRD30AQ9BXX3 1397 aa15.52■□□□□ 0.07
PTCH1-208ENST00000430669 RSPH4AQ5TD94 716 aa15.52■□□□□ 0.07
PTCH1-208ENST00000430669 IFT140Q96RY7 1462 aa15.5■□□□□ 0.07
PTCH1-208ENST00000430669 IGF1RP08069 1367 aa15.5■□□□□ 0.07
PTCH1-208ENST00000430669 WDR43Q15061 677 aaKnown RBP eCLIP15.5■□□□□ 0.07
PTCH1-208ENST00000430669 RAD54L2Q9Y4B4 1467 aa15.5■□□□□ 0.07
PTCH1-208ENST00000430669 EHBP1L1Q8N3D4 1523 aa15.49■□□□□ 0.07
PTCH1-208ENST00000430669 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.49■□□□□ 0.07
PTCH1-208ENST00000430669 CASKIN1Q8WXD9 1431 aa15.49■□□□□ 0.07
PTCH1-208ENST00000430669 KANK4Q5T7N3 995 aaPredicted RBP15.48■□□□□ 0.07
PTCH1-208ENST00000430669 LRRC9Q6ZRR7 1453 aa15.47■□□□□ 0.07
PTCH1-208ENST00000430669 MRS2Q9HD23 443 aa15.46■□□□□ 0.07
PTCH1-208ENST00000430669 TIAM1Q13009 1591 aa15.46■□□□□ 0.07
PTCH1-208ENST00000430669 MIER1Q8N108 512 aa15.46■□□□□ 0.06
PTCH1-208ENST00000430669 FAM9BQ8IZU0 186 aa15.45■□□□□ 0.06
PTCH1-208ENST00000430669 PRXQ9BXM0 1461 aa15.45■□□□□ 0.06
PTCH1-208ENST00000430669 POLA1P09884 1462 aaPredicted RBP15.45■□□□□ 0.06
PTCH1-208ENST00000430669 IQGAP2Q13576 1575 aa15.43■□□□□ 0.06
PTCH1-208ENST00000430669 ABCA10Q8WWZ4 1543 aa15.43■□□□□ 0.06
PTCH1-208ENST00000430669 ANP32AP39687 249 aaKnown RBP15.43■□□□□ 0.06
PTCH1-208ENST00000430669 CARD11Q9BXL7 1154 aa15.42■□□□□ 0.06
PTCH1-208ENST00000430669 PBRM1Q86U86 1689 aa15.4■□□□□ 0.06
PTCH1-208ENST00000430669 FKBP8Q14318 412 aa15.39■□□□□ 0.05
PTCH1-208ENST00000430669 NESP48681 1621 aa15.38■□□□□ 0.05
PTCH1-208ENST00000430669 ARAP1Q96P48 1450 aa15.38■□□□□ 0.05
PTCH1-208ENST00000430669 JPH4Q96JJ6 628 aa15.37■□□□□ 0.05
PTCH1-208ENST00000430669 MYOM3Q5VTT5 1437 aa15.37■□□□□ 0.05
PTCH1-208ENST00000430669 KNSTRNQ9Y448 316 aa15.37■□□□□ 0.05
PTCH1-208ENST00000430669 ITSN2Q9NZM3 1697 aa15.36■□□□□ 0.05
PTCH1-208ENST00000430669 MAP3K1Q13233 1512 aa15.36■□□□□ 0.05
PTCH1-208ENST00000430669 EFCAB2Q5VUJ9 269 aa15.36■□□□□ 0.05
PTCH1-208ENST00000430669 PPP1R15AO75807 674 aaPredicted RBP15.35■□□□□ 0.05
PTCH1-208ENST00000430669 FGD6Q6ZV73 1430 aa15.35■□□□□ 0.05
PTCH1-208ENST00000430669 EIF3AQ14152 1382 aaKnown RBP15.34■□□□□ 0.05
PTCH1-208ENST00000430669 PCF11O94913 1555 aaKnown RBP15.33■□□□□ 0.05
PTCH1-208ENST00000430669 SIN3AQ96ST3 1273 aa15.33■□□□□ 0.04
PTCH1-208ENST00000430669 MPHOSPH9Q99550 1183 aa15.33■□□□□ 0.04
PTCH1-208ENST00000430669 RGL3Q3MIN7 710 aa15.32■□□□□ 0.04
PTCH1-208ENST00000430669 AQRO60306 1485 aaKnown RBP eCLIP15.32■□□□□ 0.043e-7■■■□□ 17
PTCH1-208ENST00000430669 CCER2I3L3R5 266 aa15.32■□□□□ 0.04
PTCH1-208ENST00000430669 THOC2Q8NI27 1593 aaKnown RBP15.32■□□□□ 0.04
PTCH1-208ENST00000430669 CFAP53Q96M91 514 aa15.32■□□□□ 0.04
PTCH1-208ENST00000430669 PTPRGP23470 1445 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms