RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LOC105371045A0A1W2PR82 267 aa16.23■□□□□ 0.19
CD44-207ENST00000425428 TNIKQ9UKE5 1360 aa16.2■□□□□ 0.18
CD44-207ENST00000425428 KIAA0586Q9BVV6 1533 aa16.19■□□□□ 0.18
CD44-207ENST00000425428 NUP160Q12769 1436 aa16.19■□□□□ 0.18
CD44-207ENST00000425428 CEP170Q5SW79 1584 aa16.18■□□□□ 0.18
CD44-207ENST00000425428 IQGAP2Q13576 1575 aa16.18■□□□□ 0.18
CD44-207ENST00000425428 RANGAP1P46060 587 aaPredicted RBP16.15■□□□□ 0.18
CD44-207ENST00000425428 JPH4Q96JJ6 628 aa16.12■□□□□ 0.17
CD44-207ENST00000425428 CARMIL2Q6F5E8 1435 aa16.11■□□□□ 0.17
CD44-207ENST00000425428 CLASP1Q7Z460 1538 aa16.09■□□□□ 0.17
CD44-207ENST00000425428 CLIP1P30622 1438 aa16.07■□□□□ 0.16
CD44-207ENST00000425428 EFCAB5A4FU69 1503 aa16.06■□□□□ 0.16
CD44-207ENST00000425428 CEP162Q5TB80 1403 aa16.06■□□□□ 0.16
CD44-207ENST00000425428 UGGT2Q9NYU1 1516 aa16.06■□□□□ 0.16
CD44-207ENST00000425428 PRG4Q92954 1404 aaPredicted RBP16.04■□□□□ 0.16
CD44-207ENST00000425428 SHROOM2Q13796 1616 aa16.03■□□□□ 0.16
CD44-207ENST00000425428 P3H3Q8IVL6 736 aa16■□□□□ 0.15
CD44-207ENST00000425428 KIAA0556O60303 1618 aa15.99■□□□□ 0.15
CD44-207ENST00000425428 SAMD9Q5K651 1589 aa15.99■□□□□ 0.15
CD44-207ENST00000425428 TTBK1Q5TCY1 1321 aaPredicted RBP15.96■□□□□ 0.15
CD44-207ENST00000425428 ARHGAP35Q9NRY4 1499 aa15.95■□□□□ 0.14
CD44-207ENST00000425428 FMN1Q68DA7 1419 aa15.95■□□□□ 0.14
CD44-207ENST00000425428 DISP1Q96F81 1524 aa15.94■□□□□ 0.14
CD44-207ENST00000425428 PTPRGP23470 1445 aa15.92■□□□□ 0.14
CD44-207ENST00000425428 FHOD3Q2V2M9 1422 aa15.92■□□□□ 0.14
CD44-207ENST00000425428 ARHGEF11O15085 1522 aa15.9■□□□□ 0.14
CD44-207ENST00000425428 APLP2Q06481 763 aa15.9■□□□□ 0.14
CD44-207ENST00000425428 ATP1B4Q9UN42 357 aaPredicted RBP15.89■□□□□ 0.13
CD44-207ENST00000425428 RIMBP3CA6NJZ7 1639 aa15.87■□□□□ 0.13
CD44-207ENST00000425428 RIMBP3BA6NNM3 1639 aa15.87■□□□□ 0.13
CD44-207ENST00000425428 RIMBP3Q9UFD9 1639 aa15.87■□□□□ 0.13
CD44-207ENST00000425428 ARAP1Q96P48 1450 aa15.86■□□□□ 0.13
CD44-207ENST00000425428 ERCC6L2Q5T890 1561 aa15.86■□□□□ 0.13
CD44-207ENST00000425428 VPS8Q8N3P4 1428 aa15.85■□□□□ 0.13
CD44-207ENST00000425428 NPM1P06748 294 aaKnown RBP eCLIP15.82■□□□□ 0.12
CD44-207ENST00000425428 RAPGEF6Q8TEU7 1601 aa15.81■□□□□ 0.12
CD44-207ENST00000425428 DNAJC5Q9H3Z4 198 aa15.81■□□□□ 0.12
CD44-207ENST00000425428 HECW1Q76N89 1606 aa15.81■□□□□ 0.12
CD44-207ENST00000425428 UACAQ9BZF9 1416 aa15.8■□□□□ 0.12
CD44-207ENST00000425428 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.8■□□□□ 0.12
CD44-207ENST00000425428 HNRNPUL2Q1KMD3 747 aaKnown RBP15.8■□□□□ 0.12
CD44-207ENST00000425428 FYCO1Q9BQS8 1478 aa15.8■□□□□ 0.12
CD44-207ENST00000425428 CYB5RLQ6IPT4 315 aa15.8■□□□□ 0.12
CD44-207ENST00000425428 CASKIN1Q8WXD9 1431 aa15.79■□□□□ 0.12
CD44-207ENST00000425428 PCF11O94913 1555 aaKnown RBP15.77■□□□□ 0.12
CD44-207ENST00000425428 CDK11AQ9UQ88 783 aaPredicted RBP15.77■□□□□ 0.11
CD44-207ENST00000425428 PLB1Q6P1J6 1458 aa15.76■□□□□ 0.11
CD44-207ENST00000425428 ABCA8O94911 1581 aa15.76■□□□□ 0.11
CD44-207ENST00000425428 CCDC18Q5T9S5 1454 aa15.75■□□□□ 0.11
CD44-207ENST00000425428 ABCC2Q92887 1545 aa15.75■□□□□ 0.11
CD44-207ENST00000425428 UHRF1BP1LA0JNW5 1464 aa15.74■□□□□ 0.11
CD44-207ENST00000425428 ARID3CA6NKF2 412 aa15.7■□□□□ 0.1
CD44-207ENST00000425428 EPRSP07814 1512 aaKnown RBP15.69■□□□□ 0.1
CD44-207ENST00000425428 ADCY10Q96PN6 1610 aa15.68■□□□□ 0.1
CD44-207ENST00000425428 NUP153P49790 1475 aaKnown RBP15.68■□□□□ 0.1
CD44-207ENST00000425428 PLEKHD1A6NEE1 506 aa15.68■□□□□ 0.1
CD44-207ENST00000425428 MAP3K1Q13233 1512 aa15.66■□□□□ 0.1
CD44-207ENST00000425428 MTUS2Q5JR59 1369 aa15.65■□□□□ 0.1
CD44-207ENST00000425428 ZCCHC11Q5TAX3 1644 aaKnown RBP15.65■□□□□ 0.1
CD44-207ENST00000425428 CFAP43Q8NDM7 1665 aa15.65■□□□□ 0.1
CD44-207ENST00000425428 KDM5BQ9UGL1 1544 aa15.64■□□□□ 0.09
CD44-207ENST00000425428 TIAM1Q13009 1591 aa15.64■□□□□ 0.09
CD44-207ENST00000425428 ATP10BO94823 1461 aa15.64■□□□□ 0.09
CD44-207ENST00000425428 LRRIQ1Q96JM4 1722 aa15.63■□□□□ 0.09
CD44-207ENST00000425428 CDK13Q14004 1512 aaKnown RBP15.63■□□□□ 0.09
CD44-207ENST00000425428 EHBP1L1Q8N3D4 1523 aa15.58■□□□□ 0.09
CD44-207ENST00000425428 LRRC9Q6ZRR7 1453 aa15.57■□□□□ 0.08
CD44-207ENST00000425428 SUPT6HQ7KZ85 1726 aaKnown RBP15.56■□□□□ 0.08
CD44-207ENST00000425428 TROQ12816 1431 aaPredicted RBP15.56■□□□□ 0.08
CD44-207ENST00000425428 KCNH8Q96L42 1107 aa15.55■□□□□ 0.08
CD44-207ENST00000425428 MAPKBP1O60336 1514 aa15.55■□□□□ 0.08
CD44-207ENST00000425428 WDR7Q9Y4E6 1490 aa15.55■□□□□ 0.08
CD44-207ENST00000425428 ASXL2Q76L83 1435 aa15.55■□□□□ 0.08
CD44-207ENST00000425428 KIF14Q15058 1648 aa15.54■□□□□ 0.08
CD44-207ENST00000425428 KANK4Q5T7N3 995 aaPredicted RBP15.52■□□□□ 0.07
CD44-207ENST00000425428 PPARGC1BQ86YN6 1023 aaKnown RBP15.52■□□□□ 0.07
CD44-207ENST00000425428 CCNB3Q8WWL7 1395 aa15.48■□□□□ 0.07
CD44-207ENST00000425428 MAGI3Q5TCQ9 1506 aa15.46■□□□□ 0.07
CD44-207ENST00000425428 ITSN2Q9NZM3 1697 aa15.46■□□□□ 0.07
CD44-207ENST00000425428 NCOA2Q15596 1464 aa15.45■□□□□ 0.06
CD44-207ENST00000425428 MYO5CQ9NQX4 1742 aa15.44■□□□□ 0.06
CD44-207ENST00000425428 FAM69CQ0P6D2 419 aa15.44■□□□□ 0.06
CD44-207ENST00000425428 TRHP20396 242 aaPredicted RBP15.44■□□□□ 0.06
CD44-207ENST00000425428 ABCC10Q5T3U5 1492 aa15.42■□□□□ 0.06
CD44-207ENST00000425428 ABCA9Q8IUA7 1624 aa15.41■□□□□ 0.06
CD44-207ENST00000425428 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.41■□□□□ 0.06
CD44-207ENST00000425428 CFDP1Q9UEE9 299 aaPredicted RBP15.41■□□□□ 0.06
CD44-207ENST00000425428 GLI2P10070 1586 aa15.4■□□□□ 0.06
CD44-207ENST00000425428 MYOM3Q5VTT5 1437 aa15.39■□□□□ 0.05
CD44-207ENST00000425428 CD109Q6YHK3 1445 aa15.39■□□□□ 0.05
CD44-207ENST00000425428 DIP2BQ9P265 1576 aa15.39■□□□□ 0.05
CD44-207ENST00000425428 CDC42BPAQ5VT25 1732 aa15.38■□□□□ 0.05
CD44-207ENST00000425428 TTC37Q6PGP7 1564 aa15.38■□□□□ 0.05
CD44-207ENST00000425428 ARHGAP5Q13017 1502 aa15.38■□□□□ 0.05
CD44-207ENST00000425428 EFCAB2Q5VUJ9 269 aa15.38■□□□□ 0.05
CD44-207ENST00000425428 ZNF777Q9ULD5 760 aaPredicted RBP15.37■□□□□ 0.05
CD44-207ENST00000425428 CFAP74Q9C0B2 1584 aa15.37■□□□□ 0.05
CD44-207ENST00000425428 MIA2Q96PC5 1412 aa15.37■□□□□ 0.05
CD44-207ENST00000425428 PREX2Q70Z35 1606 aa15.36■□□□□ 0.05
CD44-207ENST00000425428 TSPOAP1O95153 1857 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms