RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 NISCHQ9Y2I1 1504 aa23.46■■□□□ 1.35
CD44-207ENST00000425428 CCDC180Q9P1Z9 1646 aa20.75■□□□□ 0.91
CD44-207ENST00000425428 ABCC9O60706 1549 aa19.88■□□□□ 0.77
CD44-207ENST00000425428 DCAF8L2P0C7V8 631 aa19.6■□□□□ 0.73
CD44-207ENST00000425428 ZCCHC6Q5VYS8 1495 aaKnown RBP19.6■□□□□ 0.73
CD44-207ENST00000425428 DCAF1Q9Y4B6 1507 aa19.44■□□□□ 0.7
CD44-207ENST00000425428 NACADO15069 1562 aa19.42■□□□□ 0.7
CD44-207ENST00000425428 MYO15BQ96JP2 1530 aa19.38■□□□□ 0.69
CD44-207ENST00000425428 RB1CC1Q8TDY2 1594 aa19.37■□□□□ 0.69
CD44-207ENST00000425428 SCRIBQ14160 1630 aa18.94■□□□□ 0.62
CD44-207ENST00000425428 UNC13AQ9UPW8 1703 aa18.86■□□□□ 0.61
CD44-207ENST00000425428 SHROOM4Q9ULL8 1493 aa18.81■□□□□ 0.6
CD44-207ENST00000425428 PABPN1Q86U42 306 aaKnown RBP eCLIP18.64■□□□□ 0.57
CD44-207ENST00000425428 BICRAQ9NZM4 1560 aa18.6■□□□□ 0.57
CD44-207ENST00000425428 BAZ1AQ9NRL2 1556 aaPredicted RBP18.22■□□□□ 0.51
CD44-207ENST00000425428 CECR2Q9BXF3 1484 aa18.17■□□□□ 0.5
CD44-207ENST00000425428 EIF4G1Q04637 1599 aaKnown RBP18.17■□□□□ 0.5
CD44-207ENST00000425428 SMARCA4P51532 1647 aa18.14■□□□□ 0.49
CD44-207ENST00000425428 MROH2BQ7Z745 1585 aa18.04■□□□□ 0.48
CD44-207ENST00000425428 CC2D2AQ9P2K1 1620 aa18.01■□□□□ 0.47
CD44-207ENST00000425428 SMARCA2P51531 1590 aa18■□□□□ 0.47
CD44-207ENST00000425428 RSF1Q96T23 1441 aaPredicted RBP17.99■□□□□ 0.47
CD44-207ENST00000425428 SUPT5HO00267 1087 aaKnown RBP17.96■□□□□ 0.47
CD44-207ENST00000425428 PEG3Q9GZU2 1588 aa17.92■□□□□ 0.46
CD44-207ENST00000425428 ATAD2BQ9ULI0 1458 aa17.91■□□□□ 0.46
CD44-207ENST00000425428 WIZO95785 1651 aa17.91■□□□□ 0.46
CD44-207ENST00000425428 BAZ1BQ9UIG0 1483 aaKnown RBP17.86■□□□□ 0.45
CD44-207ENST00000425428 NCAPD3P42695 1498 aa17.85■□□□□ 0.45
CD44-207ENST00000425428 HMGXB3Q12766 1538 aa17.82■□□□□ 0.44
CD44-207ENST00000425428 TOP2AP11388 1531 aaKnown RBP17.77■□□□□ 0.44
CD44-207ENST00000425428 DNAJC5BQ9UF47 199 aa17.76■□□□□ 0.43
CD44-207ENST00000425428 CCDC88BA6NC98 1476 aa17.53■□□□□ 0.4
CD44-207ENST00000425428 LAMC3Q9Y6N6 1575 aa17.39■□□□□ 0.37
CD44-207ENST00000425428 CADPSQ9ULU8 1353 aa17.38■□□□□ 0.37
CD44-207ENST00000425428 PRDM2Q13029 1718 aa17.34■□□□□ 0.37
CD44-207ENST00000425428 CFTRP13569 1480 aa17.33■□□□□ 0.36
CD44-207ENST00000425428 AEBP2Q6ZN18 517 aaPredicted RBP17.3■□□□□ 0.36
CD44-207ENST00000425428 PDS5BQ9NTI5 1447 aa17.3■□□□□ 0.36
CD44-207ENST00000425428 NESP48681 1621 aa17.26■□□□□ 0.35
CD44-207ENST00000425428 ERCC6Q03468 1493 aa17.22■□□□□ 0.35
CD44-207ENST00000425428 FANCD2Q9BXW9 1451 aa17.19■□□□□ 0.34
CD44-207ENST00000425428 CEP164Q9UPV0 1460 aa17.17■□□□□ 0.34
CD44-207ENST00000425428 KIF21AQ7Z4S6 1674 aa17.14■□□□□ 0.33
CD44-207ENST00000425428 ABCC8Q09428 1581 aa17.07■□□□□ 0.32
CD44-207ENST00000425428 MRC2Q9UBG0 1479 aa17.03■□□□□ 0.32
CD44-207ENST00000425428 WRNQ14191 1432 aaPredicted RBP eCLIP17.03■□□□□ 0.32
CD44-207ENST00000425428 TRIM41Q8WV44 630 aa17■□□□□ 0.31
CD44-207ENST00000425428 DNMBPQ6XZF7 1577 aa16.99■□□□□ 0.31
CD44-207ENST00000425428 TOPBP1Q92547 1522 aa16.94■□□□□ 0.3
CD44-207ENST00000425428 THOC2Q8NI27 1593 aaKnown RBP16.93■□□□□ 0.3
CD44-207ENST00000425428 TOP2BQ02880 1626 aa16.93■□□□□ 0.3
CD44-207ENST00000425428 URB2Q14146 1524 aaKnown RBP16.93■□□□□ 0.3
CD44-207ENST00000425428 BIVM-ERCC5R4GMW8 1640 aa16.92■□□□□ 0.3
CD44-207ENST00000425428 WDR62O43379 1518 aa16.92■□□□□ 0.3
CD44-207ENST00000425428 CUX1P39880 1505 aa16.92■□□□□ 0.3
CD44-207ENST00000425428 CHIC1Q5VXU3 224 aa16.92■□□□□ 0.3
CD44-207ENST00000425428 SYNJ1O43426 1573 aa16.9■□□□□ 0.3
CD44-207ENST00000425428 FGD5Q6ZNL6 1462 aa16.85■□□□□ 0.29
CD44-207ENST00000425428 CUX2O14529 1486 aa16.83■□□□□ 0.28
CD44-207ENST00000425428 POLA1P09884 1462 aaPredicted RBP16.81■□□□□ 0.28
CD44-207ENST00000425428 SOGA1O94964 1423 aa16.81■□□□□ 0.28
CD44-207ENST00000425428 IFT140Q96RY7 1462 aa16.78■□□□□ 0.28
CD44-207ENST00000425428 RAD54L2Q9Y4B4 1467 aa16.71■□□□□ 0.27
CD44-207ENST00000425428 ABCA10Q8WWZ4 1543 aa16.7■□□□□ 0.26
CD44-207ENST00000425428 KIF27Q86VH2 1401 aa16.69■□□□□ 0.26
CD44-207ENST00000425428 WDR97A6NE52 1622 aa16.69■□□□□ 0.26
CD44-207ENST00000425428 TARBP1Q13395 1621 aaKnown RBP16.69■□□□□ 0.26
CD44-207ENST00000425428 EEA1Q15075 1411 aa16.66■□□□□ 0.26
CD44-207ENST00000425428 TDRD9Q8NDG6 1382 aaKnown RBP16.62■□□□□ 0.25
CD44-207ENST00000425428 GAPVD1Q14C86 1478 aa16.62■□□□□ 0.25
CD44-207ENST00000425428 EIF4G3O43432 1585 aaKnown RBP16.59■□□□□ 0.25
CD44-207ENST00000425428 FAM9AQ8IZU1 332 aaPredicted RBP16.59■□□□□ 0.25
CD44-207ENST00000425428 ABCA5Q8WWZ7 1642 aa16.58■□□□□ 0.24
CD44-207ENST00000425428 AQRO60306 1485 aaKnown RBP eCLIP16.58■□□□□ 0.24
CD44-207ENST00000425428 ZNF608Q9ULD9 1512 aaPredicted RBP16.58■□□□□ 0.24
CD44-207ENST00000425428 PBRM1Q86U86 1689 aa16.57■□□□□ 0.24
CD44-207ENST00000425428 GRIN2BQ13224 1484 aa16.57■□□□□ 0.24
CD44-207ENST00000425428 CSRNP3Q8WYN3 585 aa16.54■□□□□ 0.24
CD44-207ENST00000425428 ERICH3Q5RHP9 1530 aa16.54■□□□□ 0.24
CD44-207ENST00000425428 CUL7Q14999 1698 aa16.51■□□□□ 0.23
CD44-207ENST00000425428 RUSC2Q8N2Y8 1516 aa16.5■□□□□ 0.23
CD44-207ENST00000425428 MAGI1Q96QZ7 1491 aaPredicted RBP16.49■□□□□ 0.23
CD44-207ENST00000425428 IGF1RP08069 1367 aa16.47■□□□□ 0.23
CD44-207ENST00000425428 SNAPC4Q5SXM2 1469 aa16.45■□□□□ 0.22
CD44-207ENST00000425428 CARMIL1Q5VZK9 1371 aa16.45■□□□□ 0.22
CD44-207ENST00000425428 CHMP7Q8WUX9 453 aaPredicted RBP16.45■□□□□ 0.22
CD44-207ENST00000425428 FBLN2P98095 1184 aa16.44■□□□□ 0.22
CD44-207ENST00000425428 FHAD1B1AJZ9 1412 aa16.44■□□□□ 0.22
CD44-207ENST00000425428 RAPGEF2Q9Y4G8 1499 aa16.4■□□□□ 0.22
CD44-207ENST00000425428 ADAMTS12P58397 1594 aa16.4■□□□□ 0.22
CD44-207ENST00000425428 SYNJ2O15056 1496 aa16.4■□□□□ 0.22
CD44-207ENST00000425428 KIF21BO75037 1637 aa16.39■□□□□ 0.21
CD44-207ENST00000425428 UBTFP17480 764 aaKnown RBP16.36■□□□□ 0.21
CD44-207ENST00000425428 GOLGA3Q08378 1498 aa16.36■□□□□ 0.21
CD44-207ENST00000425428 PRXQ9BXM0 1461 aa16.36■□□□□ 0.21
CD44-207ENST00000425428 EHMT2Q96KQ7 1210 aa16.34■□□□□ 0.21
CD44-207ENST00000425428 CHD1O14646 1710 aa16.34■□□□□ 0.21
CD44-207ENST00000425428 GRIN2AQ12879 1464 aa16.32■□□□□ 0.2
CD44-207ENST00000425428 CTTNBP2Q8WZ74 1663 aa16.26■□□□□ 0.19
CD44-207ENST00000425428 OSCARQ8IYS5 282 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms