RNA–Protein interactions for RNA: ENST00000425072.5

MDC1-205, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-205ENST00000425072 OSCARQ8IYS5 282 aa16.46■□□□□ 0.23
MDC1-205ENST00000425072 ADAMTS12P58397 1594 aa16.45■□□□□ 0.22
MDC1-205ENST00000425072 PLPPR3Q6T4P5 718 aa16.43■□□□□ 0.22
MDC1-205ENST00000425072 GRIN2AQ12879 1464 aa16.42■□□□□ 0.22
MDC1-205ENST00000425072 RIMBP3CA6NJZ7 1639 aa16.39■□□□□ 0.21
MDC1-205ENST00000425072 RIMBP3BA6NNM3 1639 aa16.39■□□□□ 0.21
MDC1-205ENST00000425072 RIMBP3Q9UFD9 1639 aa16.39■□□□□ 0.21
MDC1-205ENST00000425072 RANGAP1P46060 587 aaPredicted RBP16.38■□□□□ 0.21
MDC1-205ENST00000425072 CEP162Q5TB80 1403 aa16.36■□□□□ 0.21
MDC1-205ENST00000425072 KIAA0586Q9BVV6 1533 aa16.35■□□□□ 0.21
MDC1-205ENST00000425072 CLIP1P30622 1438 aa16.35■□□□□ 0.21
MDC1-205ENST00000425072 CTTNBP2Q8WZ74 1663 aa16.33■□□□□ 0.2
MDC1-205ENST00000425072 NUP160Q12769 1436 aa16.31■□□□□ 0.2
MDC1-205ENST00000425072 JPH4Q96JJ6 628 aa16.31■□□□□ 0.2
MDC1-205ENST00000425072 TRHP20396 242 aaPredicted RBP16.3■□□□□ 0.2
MDC1-205ENST00000425072 CHD1O14646 1710 aa16.28■□□□□ 0.2
MDC1-205ENST00000425072 IQGAP2Q13576 1575 aa16.27■□□□□ 0.2
MDC1-205ENST00000425072 P3H3Q8IVL6 736 aa16.24■□□□□ 0.19
MDC1-205ENST00000425072 CEP170Q5SW79 1584 aa16.24■□□□□ 0.19
MDC1-205ENST00000425072 EFCAB5A4FU69 1503 aa16.23■□□□□ 0.19
MDC1-205ENST00000425072 ARHGAP35Q9NRY4 1499 aa16.22■□□□□ 0.19
MDC1-205ENST00000425072 CARMIL2Q6F5E8 1435 aa16.21■□□□□ 0.19
MDC1-205ENST00000425072 ARHGEF11O15085 1522 aa16.21■□□□□ 0.19
MDC1-205ENST00000425072 UGGT2Q9NYU1 1516 aa16.21■□□□□ 0.19
MDC1-205ENST00000425072 APLP2Q06481 763 aa16.19■□□□□ 0.18
MDC1-205ENST00000425072 ILDR1Q86SU0 546 aaPredicted RBP16.18■□□□□ 0.18
MDC1-205ENST00000425072 CYB5RLQ6IPT4 315 aa16.16■□□□□ 0.18
MDC1-205ENST00000425072 VPS8Q8N3P4 1428 aa16.16■□□□□ 0.18
MDC1-205ENST00000425072 FMN1Q68DA7 1419 aa16.15■□□□□ 0.18
MDC1-205ENST00000425072 SAMD9Q5K651 1589 aa16.14■□□□□ 0.17
MDC1-205ENST00000425072 ARAP1Q96P48 1450 aa16.14■□□□□ 0.17
MDC1-205ENST00000425072 PRG4Q92954 1404 aaPredicted RBP16.13■□□□□ 0.17
MDC1-205ENST00000425072 FHOD3Q2V2M9 1422 aa16.11■□□□□ 0.17
MDC1-205ENST00000425072 CLASP1Q7Z460 1538 aa16.11■□□□□ 0.17
MDC1-205ENST00000425072 DISP1Q96F81 1524 aa16.11■□□□□ 0.17
MDC1-205ENST00000425072 ATP1B4Q9UN42 357 aaPredicted RBP16.1■□□□□ 0.17
MDC1-205ENST00000425072 SHROOM2Q13796 1616 aa16.08■□□□□ 0.17
MDC1-205ENST00000425072 KIAA0556O60303 1618 aa16.07■□□□□ 0.16
MDC1-205ENST00000425072 PTPRGP23470 1445 aa16.06■□□□□ 0.16
MDC1-205ENST00000425072 TTBK1Q5TCY1 1321 aaPredicted RBP16.06■□□□□ 0.16
MDC1-205ENST00000425072 CASKIN1Q8WXD9 1431 aa16.04■□□□□ 0.16
MDC1-205ENST00000425072 FYCO1Q9BQS8 1478 aa15.99■□□□□ 0.15
MDC1-205ENST00000425072 CDK11AQ9UQ88 783 aaPredicted RBP15.98■□□□□ 0.15
MDC1-205ENST00000425072 MAP3K1Q13233 1512 aa15.97■□□□□ 0.15
MDC1-205ENST00000425072 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.95■□□□□ 0.14
MDC1-205ENST00000425072 HNRNPUL2Q1KMD3 747 aaKnown RBP15.95■□□□□ 0.14
MDC1-205ENST00000425072 PPARGC1BQ86YN6 1023 aaKnown RBP15.93■□□□□ 0.14
MDC1-205ENST00000425072 UACAQ9BZF9 1416 aa15.93■□□□□ 0.14
MDC1-205ENST00000425072 RAPGEF6Q8TEU7 1601 aa15.92■□□□□ 0.14
MDC1-205ENST00000425072 ERCC6L2Q5T890 1561 aa15.92■□□□□ 0.14
MDC1-205ENST00000425072 CCDC18Q5T9S5 1454 aa15.91■□□□□ 0.14
MDC1-205ENST00000425072 HECW1Q76N89 1606 aa15.91■□□□□ 0.14
MDC1-205ENST00000425072 PCF11O94913 1555 aaKnown RBP15.91■□□□□ 0.14
MDC1-205ENST00000425072 PLB1Q6P1J6 1458 aa15.91■□□□□ 0.14
MDC1-205ENST00000425072 PLEKHD1A6NEE1 506 aa15.9■□□□□ 0.14
MDC1-205ENST00000425072 KANK4Q5T7N3 995 aaPredicted RBP15.9■□□□□ 0.14
MDC1-205ENST00000425072 NPM1P06748 294 aaKnown RBP eCLIP15.89■□□□□ 0.13
MDC1-205ENST00000425072 ABCA8O94911 1581 aa15.88■□□□□ 0.13
MDC1-205ENST00000425072 EPRSP07814 1512 aaKnown RBP15.88■□□□□ 0.13
MDC1-205ENST00000425072 TIAM1Q13009 1591 aa15.87■□□□□ 0.13
MDC1-205ENST00000425072 UHRF1BP1LA0JNW5 1464 aa15.86■□□□□ 0.13
MDC1-205ENST00000425072 TRIM26Q12899 539 aaPredicted RBP15.86■□□□□ 0.13
MDC1-205ENST00000425072 MTUS2Q5JR59 1369 aa15.86■□□□□ 0.13
MDC1-205ENST00000425072 NUP153P49790 1475 aaKnown RBP15.85■□□□□ 0.13
MDC1-205ENST00000425072 ARID3CA6NKF2 412 aa15.85■□□□□ 0.13
MDC1-205ENST00000425072 LRRC9Q6ZRR7 1453 aa15.84■□□□□ 0.13
MDC1-205ENST00000425072 ATP10BO94823 1461 aa15.83■□□□□ 0.12
MDC1-205ENST00000425072 ABCC2Q92887 1545 aa15.83■□□□□ 0.12
MDC1-205ENST00000425072 FOXD1Q16676 465 aa15.81■□□□□ 0.12
MDC1-205ENST00000425072 CFAP43Q8NDM7 1665 aa15.8■□□□□ 0.12
MDC1-205ENST00000425072 LRRIQ1Q96JM4 1722 aa15.78■□□□□ 0.12
MDC1-205ENST00000425072 CDK13Q14004 1512 aaKnown RBP15.77■□□□□ 0.11
MDC1-205ENST00000425072 KDM5BQ9UGL1 1544 aa15.77■□□□□ 0.11
MDC1-205ENST00000425072 TROQ12816 1431 aaPredicted RBP15.75■□□□□ 0.11
MDC1-205ENST00000425072 EHBP1L1Q8N3D4 1523 aa15.73■□□□□ 0.11
MDC1-205ENST00000425072 SUPT6HQ7KZ85 1726 aaKnown RBP15.71■□□□□ 0.11
MDC1-205ENST00000425072 KCNH8Q96L42 1107 aa15.71■□□□□ 0.11
MDC1-205ENST00000425072 ADCY10Q96PN6 1610 aa15.71■□□□□ 0.11
MDC1-205ENST00000425072 PCGF6Q9BYE7 350 aa15.7■□□□□ 0.1
MDC1-205ENST00000425072 ZCCHC11Q5TAX3 1644 aaKnown RBP15.68■□□□□ 0.1
MDC1-205ENST00000425072 NCOA2Q15596 1464 aa15.68■□□□□ 0.1
MDC1-205ENST00000425072 MAGI3Q5TCQ9 1506 aa15.68■□□□□ 0.1
MDC1-205ENST00000425072 CCNB3Q8WWL7 1395 aa15.67■□□□□ 0.1
MDC1-205ENST00000425072 PHLDB1Q86UU1 1377 aa15.64■□□□□ 0.09
MDC1-205ENST00000425072 CFDP1Q9UEE9 299 aaPredicted RBP15.64■□□□□ 0.09
MDC1-205ENST00000425072 MYOM3Q5VTT5 1437 aa15.63■□□□□ 0.09
MDC1-205ENST00000425072 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.62■□□□□ 0.09
MDC1-205ENST00000425072 ASXL2Q76L83 1435 aa15.62■□□□□ 0.09
MDC1-205ENST00000425072 MIA2Q96PC5 1412 aa15.62■□□□□ 0.09
MDC1-205ENST00000425072 RRBP1Q9P2E9 1410 aaKnown RBP15.62■□□□□ 0.09
MDC1-205ENST00000425072 FAM50AQ14320 339 aaKnown RBP15.62■□□□□ 0.09
MDC1-205ENST00000425072 KIF14Q15058 1648 aa15.61■□□□□ 0.09
MDC1-205ENST00000425072 WDR7Q9Y4E6 1490 aa15.61■□□□□ 0.09
MDC1-205ENST00000425072 FGD6Q6ZV73 1430 aa15.59■□□□□ 0.09
MDC1-205ENST00000425072 EFCAB2Q5VUJ9 269 aa15.58■□□□□ 0.08
MDC1-205ENST00000425072 GPATCH8Q9UKJ3 1502 aaKnown RBP15.58■□□□□ 0.08
MDC1-205ENST00000425072 RSPH4AQ5TD94 716 aa15.57■□□□□ 0.08
MDC1-205ENST00000425072 ABCC10Q5T3U5 1492 aa15.57■□□□□ 0.08
MDC1-205ENST00000425072 KDM4FA0A1W2PPD8 638 aa15.56■□□□□ 0.08
MDC1-205ENST00000425072 MAPKBP1O60336 1514 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms