RNA–Protein interactions for RNA: ENST00000422344.5

TRAF4-204, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 631 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-204ENST00000422344 IGF1RP08069 1367 aa37.47■■■■□ 3.59
TRAF4-204ENST00000422344 CUL7Q14999 1698 aa37.44■■■■□ 3.58
TRAF4-204ENST00000422344 RUSC2Q8N2Y8 1516 aa37.38■■■■□ 3.57
TRAF4-204ENST00000422344 KIF13AQ9H1H9 1805 aa37.36■■■■□ 3.57
TRAF4-204ENST00000422344 CARMIL1Q5VZK9 1371 aa37.29■■■■□ 3.56
TRAF4-204ENST00000422344 NPM1P06748 294 aaKnown RBP eCLIP37.24■■■■□ 3.55
TRAF4-204ENST00000422344 FAM69CQ0P6D2 419 aa37.19■■■■□ 3.54
TRAF4-204ENST00000422344 KIAA0586Q9BVV6 1533 aa37.17■■■■□ 3.54
TRAF4-204ENST00000422344 ABCC10Q5T3U5 1492 aa37.15■■■■□ 3.54
TRAF4-204ENST00000422344 ADCY10Q96PN6 1610 aa37.14■■■■□ 3.54
TRAF4-204ENST00000422344 MAPKBP1O60336 1514 aa37.11■■■■□ 3.53
TRAF4-204ENST00000422344 DIP2BQ9P265 1576 aa37.04■■■■□ 3.52
TRAF4-204ENST00000422344 RAPGEF2Q9Y4G8 1499 aa37.03■■■■□ 3.52
TRAF4-204ENST00000422344 TTBK1Q5TCY1 1321 aaPredicted RBP36.93■■■■□ 3.5
TRAF4-204ENST00000422344 PTPRGP23470 1445 aa36.93■■■■□ 3.5
TRAF4-204ENST00000422344 IQGAP2Q13576 1575 aa36.92■■■■□ 3.5
TRAF4-204ENST00000422344 TSPOAP1O95153 1857 aa36.87■■■■□ 3.49
TRAF4-204ENST00000422344 CARMIL2Q6F5E8 1435 aa36.84■■■■□ 3.49
TRAF4-204ENST00000422344 KDM6BO15054 1643 aa36.82■■■■□ 3.49
TRAF4-204ENST00000422344 TNIKQ9UKE5 1360 aa36.81■■■■□ 3.48
TRAF4-204ENST00000422344 PRXQ9BXM0 1461 aa36.78■■■■□ 3.48
TRAF4-204ENST00000422344 ABCC2Q92887 1545 aa36.74■■■■□ 3.47
TRAF4-204ENST00000422344 CTTNBP2Q8WZ74 1663 aa36.71■■■■□ 3.47
TRAF4-204ENST00000422344 EEA1Q15075 1411 aa36.7■■■■□ 3.47
TRAF4-204ENST00000422344 CSRNP3Q8WYN3 585 aa36.7■■■■□ 3.47
TRAF4-204ENST00000422344 UGGT2Q9NYU1 1516 aa36.68■■■■□ 3.46
TRAF4-204ENST00000422344 ASXL2Q76L83 1435 aa36.67■■■■□ 3.46
TRAF4-204ENST00000422344 DISP1Q96F81 1524 aa36.64■■■■□ 3.46
TRAF4-204ENST00000422344 PLB1Q6P1J6 1458 aa36.62■■■■□ 3.45
TRAF4-204ENST00000422344 KDM4FA0A1W2PPD8 638 aa36.62■■■■□ 3.45
TRAF4-204ENST00000422344 UHRF1BP1LA0JNW5 1464 aa36.62■■■■□ 3.45
TRAF4-204ENST00000422344 UACAQ9BZF9 1416 aa36.61■■■■□ 3.45
TRAF4-204ENST00000422344 CHIC1Q5VXU3 224 aa36.59■■■■□ 3.45
TRAF4-204ENST00000422344 KIAA0556O60303 1618 aa36.56■■■■□ 3.44
TRAF4-204ENST00000422344 GLI2P10070 1586 aa36.56■■■■□ 3.44
TRAF4-204ENST00000422344 FAM9AQ8IZU1 332 aaPredicted RBP36.55■■■■□ 3.44
TRAF4-204ENST00000422344 PPRC1Q5VV67 1664 aaKnown RBP36.53■■■■□ 3.44
TRAF4-204ENST00000422344 GOLGA3Q08378 1498 aa36.51■■■■□ 3.44
TRAF4-204ENST00000422344 KDM5BQ9UGL1 1544 aa36.47■■■■□ 3.43
TRAF4-204ENST00000422344 EPRSP07814 1512 aaKnown RBP36.43■■■■□ 3.42
TRAF4-204ENST00000422344 ZCCHC11Q5TAX3 1644 aaKnown RBP36.41■■■■□ 3.42
TRAF4-204ENST00000422344 MAP3K4Q9Y6R4 1608 aa36.36■■■■□ 3.41
TRAF4-204ENST00000422344 KIF21BO75037 1637 aa36.33■■■■□ 3.41
TRAF4-204ENST00000422344 COL17A1Q9UMD9 1497 aaPredicted RBP36.32■■■■□ 3.41
TRAF4-204ENST00000422344 TEX14Q8IWB6 1497 aa36.29■■■■□ 3.4
TRAF4-204ENST00000422344 ADGRL1O94910 1474 aa36.24■■■■□ 3.39
TRAF4-204ENST00000422344 WDR7Q9Y4E6 1490 aa36.24■■■■□ 3.39
TRAF4-204ENST00000422344 P3H3Q8IVL6 736 aa36.22■■■■□ 3.39
TRAF4-204ENST00000422344 SAMD9Q5K651 1589 aa36.19■■■■□ 3.38
TRAF4-204ENST00000422344 RANGAP1P46060 587 aaPredicted RBP36.18■■■■□ 3.38
TRAF4-204ENST00000422344 ABCA8O94911 1581 aa36.17■■■■□ 3.38
TRAF4-204ENST00000422344 EHMT2Q96KQ7 1210 aa36.13■■■■□ 3.37
TRAF4-204ENST00000422344 KCNH8Q96L42 1107 aa36.13■■■■□ 3.37
TRAF4-204ENST00000422344 UBTFP17480 764 aaKnown RBP36.09■■■■□ 3.37
TRAF4-204ENST00000422344 CD109Q6YHK3 1445 aa36.08■■■■□ 3.37
TRAF4-204ENST00000422344 CFAP43Q8NDM7 1665 aa36.04■■■■□ 3.36
TRAF4-204ENST00000422344 MAGI3Q5TCQ9 1506 aa36.03■■■■□ 3.36
TRAF4-204ENST00000422344 EFCAB5A4FU69 1503 aa36.01■■■■□ 3.36
TRAF4-204ENST00000422344 FHOD3Q2V2M9 1422 aa35.99■■■■□ 3.35
TRAF4-204ENST00000422344 ARID3CA6NKF2 412 aa35.95■■■■□ 3.35
TRAF4-204ENST00000422344 RAPGEF6Q8TEU7 1601 aa35.94■■■■□ 3.34
TRAF4-204ENST00000422344 ATP10BO94823 1461 aa35.86■■■■□ 3.33
TRAF4-204ENST00000422344 HECW2Q9P2P5 1572 aa35.83■■■■□ 3.33
TRAF4-204ENST00000422344 ILDR1Q86SU0 546 aaPredicted RBP35.82■■■■□ 3.32
TRAF4-204ENST00000422344 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.81■■■■□ 3.32
TRAF4-204ENST00000422344 HNRNPUL2Q1KMD3 747 aaKnown RBP35.81■■■■□ 3.32
TRAF4-204ENST00000422344 NUP153P49790 1475 aaKnown RBP35.78■■■■□ 3.32
TRAF4-204ENST00000422344 ARAP3Q8WWN8 1544 aa35.75■■■■□ 3.31
TRAF4-204ENST00000422344 ARHGAP35Q9NRY4 1499 aa35.73■■■■□ 3.31
TRAF4-204ENST00000422344 ABCA9Q8IUA7 1624 aa35.71■■■■□ 3.31
TRAF4-204ENST00000422344 FMN1Q68DA7 1419 aa35.69■■■■□ 3.3
TRAF4-204ENST00000422344 PHLDB1Q86UU1 1377 aa35.64■■■■□ 3.3
TRAF4-204ENST00000422344 RAPGEF3O95398 923 aa35.6■■■■□ 3.29
TRAF4-204ENST00000422344 PLEKHD1A6NEE1 506 aa35.59■■■■□ 3.29
TRAF4-204ENST00000422344 ATP1B4Q9UN42 357 aaPredicted RBP35.59■■■■□ 3.29
TRAF4-204ENST00000422344 NEO1Q92859 1461 aa35.56■■■■□ 3.28
TRAF4-204ENST00000422344 HECW1Q76N89 1606 aa35.56■■■■□ 3.28
TRAF4-204ENST00000422344 CDK13Q14004 1512 aaKnown RBP35.52■■■■□ 3.28
TRAF4-204ENST00000422344 CLIP1P30622 1438 aa35.46■■■■□ 3.27
TRAF4-204ENST00000422344 ADAMTSL3P82987 1691 aa35.46■■■■□ 3.27
TRAF4-204ENST00000422344 FRMPD1Q5SYB0 1578 aa35.45■■■■□ 3.27
TRAF4-204ENST00000422344 PTPRMP28827 1452 aa35.43■■■■□ 3.26
TRAF4-204ENST00000422344 ARID4BQ4LE39 1312 aaPredicted RBP35.41■■■■□ 3.26
TRAF4-204ENST00000422344 CDK11AQ9UQ88 783 aaPredicted RBP35.39■■■■□ 3.26
TRAF4-204ENST00000422344 BCORL1Q5H9F3 1711 aa35.36■■■■□ 3.25
TRAF4-204ENST00000422344 PCF11O94913 1555 aaKnown RBP35.34■■■■□ 3.25
TRAF4-204ENST00000422344 CASKIN1Q8WXD9 1431 aa35.34■■■■□ 3.25
TRAF4-204ENST00000422344 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.33■■■■□ 3.252e-6■■■□□ 16.3
TRAF4-204ENST00000422344 DENND4BO75064 1496 aaPredicted RBP35.33■■■■□ 3.25
TRAF4-204ENST00000422344 AKNAQ7Z591 1439 aa35.32■■■■□ 3.25
TRAF4-204ENST00000422344 MADDQ8WXG6 1647 aa35.3■■■■□ 3.24
TRAF4-204ENST00000422344 FANCAO15360 1455 aa35.29■■■■□ 3.24
TRAF4-204ENST00000422344 RICTORQ6R327 1708 aa35.29■■■■□ 3.24
TRAF4-204ENST00000422344 TTC37Q6PGP7 1564 aa35.29■■■■□ 3.24
TRAF4-204ENST00000422344 CCDC18Q5T9S5 1454 aa35.28■■■■□ 3.24
TRAF4-204ENST00000422344 ARHGEF40Q8TER5 1519 aa35.27■■■■□ 3.24
TRAF4-204ENST00000422344 LRRIQ1Q96JM4 1722 aa35.27■■■■□ 3.24
TRAF4-204ENST00000422344 CFAP74Q9C0B2 1584 aa35.26■■■■□ 3.24
TRAF4-204ENST00000422344 FYCO1Q9BQS8 1478 aa35.26■■■■□ 3.23
TRAF4-204ENST00000422344 TROQ12816 1431 aaPredicted RBP35.23■■■■□ 3.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms