RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 EIF4G3O43432 1585 aaKnown RBP9.74□□□□□ -0.85
HMGB3-202ENST00000419110 CTTNBP2Q8WZ74 1663 aa9.74□□□□□ -0.85
HMGB3-202ENST00000419110 RUSC2Q8N2Y8 1516 aa9.73□□□□□ -0.85
HMGB3-202ENST00000419110 IFT140Q96RY7 1462 aa9.72□□□□□ -0.85
HMGB3-202ENST00000419110 FAM9AQ8IZU1 332 aaPredicted RBP9.72□□□□□ -0.85
HMGB3-202ENST00000419110 RAD54L2Q9Y4B4 1467 aa9.72□□□□□ -0.85
HMGB3-202ENST00000419110 ADAMTS12P58397 1594 aa9.71□□□□□ -0.86
HMGB3-202ENST00000419110 DSG3P32926 999 aa9.68□□□□□ -0.86
HMGB3-202ENST00000419110 GAPVD1Q14C86 1478 aa9.67□□□□□ -0.86
HMGB3-202ENST00000419110 PRXQ9BXM0 1461 aa9.67□□□□□ -0.86
HMGB3-202ENST00000419110 RAPGEF2Q9Y4G8 1499 aa9.66□□□□□ -0.86
HMGB3-202ENST00000419110 CSRNP3Q8WYN3 585 aa9.65□□□□□ -0.86
HMGB3-202ENST00000419110 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.63□□□□□ -0.87
HMGB3-202ENST00000419110 APLP2Q06481 763 aa9.63□□□□□ -0.87
HMGB3-202ENST00000419110 HNRNPUL2Q1KMD3 747 aaKnown RBP9.63□□□□□ -0.87
HMGB3-202ENST00000419110 GRIN2BQ13224 1484 aa9.63□□□□□ -0.87
HMGB3-202ENST00000419110 TNIKQ9UKE5 1360 aa9.62□□□□□ -0.87
HMGB3-202ENST00000419110 CEP162Q5TB80 1403 aa9.61□□□□□ -0.87
HMGB3-202ENST00000419110 ZNF608Q9ULD9 1512 aaPredicted RBP9.6□□□□□ -0.87
HMGB3-202ENST00000419110 MAGI1Q96QZ7 1491 aaPredicted RBP9.59□□□□□ -0.87
HMGB3-202ENST00000419110 TRHP20396 242 aaPredicted RBP9.59□□□□□ -0.87
HMGB3-202ENST00000419110 CHD1O14646 1710 aa9.58□□□□□ -0.88
HMGB3-202ENST00000419110 CARMIL1Q5VZK9 1371 aa9.58□□□□□ -0.88
HMGB3-202ENST00000419110 SNAPC4Q5SXM2 1469 aa9.58□□□□□ -0.88
HMGB3-202ENST00000419110 EFCAB5A4FU69 1503 aa9.57□□□□□ -0.88
HMGB3-202ENST00000419110 LOC105371045A0A1W2PR82 267 aa9.57□□□□□ -0.88
HMGB3-202ENST00000419110 SAMD1Q6SPF0 538 aaPredicted RBP9.57□□□□□ -0.88
HMGB3-202ENST00000419110 TDRD9Q8NDG6 1382 aaKnown RBP9.57□□□□□ -0.88
HMGB3-202ENST00000419110 FHAD1B1AJZ9 1412 aa9.56□□□□□ -0.88
HMGB3-202ENST00000419110 IGF1RP08069 1367 aa9.56□□□□□ -0.88
HMGB3-202ENST00000419110 EHMT2Q96KQ7 1210 aa9.56□□□□□ -0.88
HMGB3-202ENST00000419110 ZNF219Q9P2Y4 722 aaPredicted RBP9.56□□□□□ -0.88
HMGB3-202ENST00000419110 IQGAP2Q13576 1575 aa9.55□□□□□ -0.88
HMGB3-202ENST00000419110 AQRO60306 1485 aaKnown RBP eCLIP9.55□□□□□ -0.883e-6■■■■□ 24.7
HMGB3-202ENST00000419110 CLIP1P30622 1438 aa9.55□□□□□ -0.88
HMGB3-202ENST00000419110 UBTFP17480 764 aaKnown RBP9.54□□□□□ -0.88
HMGB3-202ENST00000419110 SYNJ2O15056 1496 aa9.53□□□□□ -0.88
HMGB3-202ENST00000419110 GRIN2AQ12879 1464 aa9.53□□□□□ -0.88
HMGB3-202ENST00000419110 SAMD9Q5K651 1589 aa9.52□□□□□ -0.89
HMGB3-202ENST00000419110 ABCB7O75027 752 aa9.5□□□□□ -0.89
HMGB3-202ENST00000419110 SLC4A1APQ9BWU0 796 aaKnown RBP9.5□□□□□ -0.89
HMGB3-202ENST00000419110 CFAP43Q8NDM7 1665 aa9.49□□□□□ -0.89
HMGB3-202ENST00000419110 MYCNP04198 464 aaPredicted RBP9.49□□□□□ -0.89
HMGB3-202ENST00000419110 CEP170Q5SW79 1584 aa9.49□□□□□ -0.89
HMGB3-202ENST00000419110 ARAP1Q96P48 1450 aa9.48□□□□□ -0.89
HMGB3-202ENST00000419110 VPS8Q8N3P4 1428 aa9.48□□□□□ -0.89
HMGB3-202ENST00000419110 PCF11O94913 1555 aaKnown RBP9.47□□□□□ -0.89
HMGB3-202ENST00000419110 ARHGAP35Q9NRY4 1499 aa9.47□□□□□ -0.89
HMGB3-202ENST00000419110 KIAA0556O60303 1618 aa9.45□□□□□ -0.9
HMGB3-202ENST00000419110 UGGT2Q9NYU1 1516 aa9.45□□□□□ -0.9
HMGB3-202ENST00000419110 NUP160Q12769 1436 aa9.43□□□□□ -0.9
HMGB3-202ENST00000419110 HECW1Q76N89 1606 aa9.42□□□□□ -0.9
HMGB3-202ENST00000419110 KIAA0586Q9BVV6 1533 aa9.42□□□□□ -0.9
HMGB3-202ENST00000419110 FYCO1Q9BQS8 1478 aa9.41□□□□□ -0.9
HMGB3-202ENST00000419110 SHROOM2Q13796 1616 aa9.41□□□□□ -0.9
HMGB3-202ENST00000419110 FOXD4L1Q9NU39 408 aa9.39□□□□□ -0.91
HMGB3-202ENST00000419110 LRRIQ1Q96JM4 1722 aa9.39□□□□□ -0.91
HMGB3-202ENST00000419110 FHOD3Q2V2M9 1422 aa9.39□□□□□ -0.91
HMGB3-202ENST00000419110 FMN1Q68DA7 1419 aa9.39□□□□□ -0.91
HMGB3-202ENST00000419110 TIAM1Q13009 1591 aa9.38□□□□□ -0.91
HMGB3-202ENST00000419110 CLASP1Q7Z460 1538 aa9.38□□□□□ -0.91
HMGB3-202ENST00000419110 RAPGEF6Q8TEU7 1601 aa9.36□□□□□ -0.91
HMGB3-202ENST00000419110 RANGAP1P46060 587 aaPredicted RBP9.36□□□□□ -0.91
HMGB3-202ENST00000419110 CHMP7Q8WUX9 453 aaPredicted RBP9.36□□□□□ -0.91
HMGB3-202ENST00000419110 MAP3K1Q13233 1512 aa9.35□□□□□ -0.91
HMGB3-202ENST00000419110 DISP1Q96F81 1524 aa9.35□□□□□ -0.91
HMGB3-202ENST00000419110 CCDC18Q5T9S5 1454 aa9.34□□□□□ -0.91
HMGB3-202ENST00000419110 POLA2Q14181 598 aa9.34□□□□□ -0.91
HMGB3-202ENST00000419110 CARMIL2Q6F5E8 1435 aa9.33□□□□□ -0.92
HMGB3-202ENST00000419110 CASKIN1Q8WXD9 1431 aa9.33□□□□□ -0.92
HMGB3-202ENST00000419110 EHBP1L1Q8N3D4 1523 aa9.32□□□□□ -0.92
HMGB3-202ENST00000419110 FBLN2P98095 1184 aa9.32□□□□□ -0.92
HMGB3-202ENST00000419110 SUPT6HQ7KZ85 1726 aaKnown RBP9.31□□□□□ -0.92
HMGB3-202ENST00000419110 ATF5Q9Y2D1 282 aaPredicted RBP9.27□□□□□ -0.93
HMGB3-202ENST00000419110 ABCA8O94911 1581 aa9.27□□□□□ -0.93
HMGB3-202ENST00000419110 ITSN2Q9NZM3 1697 aa9.26□□□□□ -0.93
HMGB3-202ENST00000419110 POTEHQ6S545 545 aa9.26□□□□□ -0.93
HMGB3-202ENST00000419110 ADCY10Q96PN6 1610 aa9.26□□□□□ -0.93
HMGB3-202ENST00000419110 PRG4Q92954 1404 aaPredicted RBP9.25□□□□□ -0.93
HMGB3-202ENST00000419110 LRRC9Q6ZRR7 1453 aa9.25□□□□□ -0.93
HMGB3-202ENST00000419110 EPRSP07814 1512 aaKnown RBP9.25□□□□□ -0.93
HMGB3-202ENST00000419110 RBM42Q9BTD8 480 aaKnown RBP9.24□□□□□ -0.93
HMGB3-202ENST00000419110 CDK13Q14004 1512 aaKnown RBP9.24□□□□□ -0.93
HMGB3-202ENST00000419110 KIF14Q15058 1648 aa9.23□□□□□ -0.93
HMGB3-202ENST00000419110 NUP153P49790 1475 aaKnown RBP9.23□□□□□ -0.93
HMGB3-202ENST00000419110 ZBTB22O15209 634 aa9.23□□□□□ -0.93
HMGB3-202ENST00000419110 P3H3Q8IVL6 736 aa9.23□□□□□ -0.93
HMGB3-202ENST00000419110 ERCC6L2Q5T890 1561 aa9.23□□□□□ -0.93
HMGB3-202ENST00000419110 ABCC2Q92887 1545 aa9.22□□□□□ -0.93
HMGB3-202ENST00000419110 PLB1Q6P1J6 1458 aa9.21□□□□□ -0.94
HMGB3-202ENST00000419110 ZCCHC11Q5TAX3 1644 aaKnown RBP9.2□□□□□ -0.94
HMGB3-202ENST00000419110 TRIM26Q12899 539 aaPredicted RBP9.2□□□□□ -0.94
HMGB3-202ENST00000419110 MTUS2Q5JR59 1369 aa9.2□□□□□ -0.94
HMGB3-202ENST00000419110 JPH4Q96JJ6 628 aa9.19□□□□□ -0.94
HMGB3-202ENST00000419110 MAGI3Q5TCQ9 1506 aa9.19□□□□□ -0.94
HMGB3-202ENST00000419110 TTBK1Q5TCY1 1321 aaPredicted RBP9.18□□□□□ -0.94
HMGB3-202ENST00000419110 CDC42BPAQ5VT25 1732 aa9.17□□□□□ -0.94
HMGB3-202ENST00000419110 MYO5CQ9NQX4 1742 aa9.17□□□□□ -0.94
HMGB3-202ENST00000419110 ARHGEF11O15085 1522 aa9.16□□□□□ -0.94
HMGB3-202ENST00000419110 NCOA2Q15596 1464 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms