RNA–Protein interactions for RNA: ENST00000417946.5

CPS1-202, Transcript of carbamoyl-phosphate synthase 1, humanhuman

TSL 3

Gene CPS1, Length 699 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPS1-202ENST00000417946 ERCC6Q03468 1493 aa11.53□□□□□ -0.56
CPS1-202ENST00000417946 SOGA1O94964 1423 aa11.51□□□□□ -0.57
CPS1-202ENST00000417946 CUX2O14529 1486 aa11.51□□□□□ -0.57
CPS1-202ENST00000417946 RUSC2Q8N2Y8 1516 aa11.5□□□□□ -0.57
CPS1-202ENST00000417946 TARBP1Q13395 1621 aaKnown RBP11.5□□□□□ -0.57
CPS1-202ENST00000417946 POTEHQ6S545 545 aa11.5□□□□□ -0.57
CPS1-202ENST00000417946 ZBTB12Q9Y330 459 aaPredicted RBP11.49□□□□□ -0.57
CPS1-202ENST00000417946 RAD54L2Q9Y4B4 1467 aa11.49□□□□□ -0.57
CPS1-202ENST00000417946 ABCA10Q8WWZ4 1543 aa11.47□□□□□ -0.57
CPS1-202ENST00000417946 ABCA5Q8WWZ7 1642 aa11.44□□□□□ -0.58
CPS1-202ENST00000417946 EEA1Q15075 1411 aa11.42□□□□□ -0.58
CPS1-202ENST00000417946 IFT140Q96RY7 1462 aa11.4□□□□□ -0.58
CPS1-202ENST00000417946 KIF27Q86VH2 1401 aa11.38□□□□□ -0.59
CPS1-202ENST00000417946 ZNF608Q9ULD9 1512 aaPredicted RBP11.38□□□□□ -0.59
CPS1-202ENST00000417946 ATXN8OSP0DMR3 200 aa11.37□□□□□ -0.59
CPS1-202ENST00000417946 KIF21BO75037 1637 aa11.36□□□□□ -0.59
CPS1-202ENST00000417946 FAM9AQ8IZU1 332 aaPredicted RBP11.36□□□□□ -0.59
CPS1-202ENST00000417946 EIF4G3O43432 1585 aaKnown RBP11.36□□□□□ -0.59
CPS1-202ENST00000417946 PBRM1Q86U86 1689 aa11.36□□□□□ -0.59
CPS1-202ENST00000417946 PRXQ9BXM0 1461 aa11.34□□□□□ -0.59
CPS1-202ENST00000417946 TDRD9Q8NDG6 1382 aaKnown RBP11.34□□□□□ -0.59
CPS1-202ENST00000417946 ATF5Q9Y2D1 282 aaPredicted RBP11.34□□□□□ -0.59
CPS1-202ENST00000417946 IGF1RP08069 1367 aa11.33□□□□□ -0.6
CPS1-202ENST00000417946 GAPVD1Q14C86 1478 aa11.32□□□□□ -0.6
CPS1-202ENST00000417946 ERICH3Q5RHP9 1530 aa11.32□□□□□ -0.6
CPS1-202ENST00000417946 CSRNP3Q8WYN3 585 aa11.32□□□□□ -0.6
CPS1-202ENST00000417946 AQRO60306 1485 aaKnown RBP eCLIP11.32□□□□□ -0.6
CPS1-202ENST00000417946 CUL7Q14999 1698 aa11.3□□□□□ -0.6
CPS1-202ENST00000417946 ADAMTS12P58397 1594 aa11.29□□□□□ -0.6
CPS1-202ENST00000417946 RAPGEF2Q9Y4G8 1499 aa11.29□□□□□ -0.6
CPS1-202ENST00000417946 GRIN2BQ13224 1484 aa11.27□□□□□ -0.6
CPS1-202ENST00000417946 LOC105371045A0A1W2PR82 267 aa11.27□□□□□ -0.61
CPS1-202ENST00000417946 ZBTB22O15209 634 aa11.27□□□□□ -0.61
CPS1-202ENST00000417946 GOLGA3Q08378 1498 aa11.26□□□□□ -0.61
CPS1-202ENST00000417946 AKT1S1Q96B36 256 aa11.25□□□□□ -0.61
CPS1-202ENST00000417946 CARMIL1Q5VZK9 1371 aa11.24□□□□□ -0.61
CPS1-202ENST00000417946 SNAPC4Q5SXM2 1469 aa11.24□□□□□ -0.61
CPS1-202ENST00000417946 CHRDL2Q6WN34 429 aa11.22□□□□□ -0.61
CPS1-202ENST00000417946 MAGI1Q96QZ7 1491 aaPredicted RBP11.21□□□□□ -0.61
CPS1-202ENST00000417946 FHAD1B1AJZ9 1412 aa11.2□□□□□ -0.62
CPS1-202ENST00000417946 TNIKQ9UKE5 1360 aa11.19□□□□□ -0.62
CPS1-202ENST00000417946 FBLN2P98095 1184 aa11.19□□□□□ -0.62
CPS1-202ENST00000417946 CTTNBP2Q8WZ74 1663 aa11.17□□□□□ -0.62
CPS1-202ENST00000417946 EHMT2Q96KQ7 1210 aa11.17□□□□□ -0.62
CPS1-202ENST00000417946 SYNJ2O15056 1496 aa11.17□□□□□ -0.62
CPS1-202ENST00000417946 CHD1O14646 1710 aa11.16□□□□□ -0.62
CPS1-202ENST00000417946 GRIN2AQ12879 1464 aa11.16□□□□□ -0.62
CPS1-202ENST00000417946 OSCARQ8IYS5 282 aa11.15□□□□□ -0.62
CPS1-202ENST00000417946 CEP170Q5SW79 1584 aa11.13□□□□□ -0.63
CPS1-202ENST00000417946 CEP162Q5TB80 1403 aa11.13□□□□□ -0.63
CPS1-202ENST00000417946 NUP160Q12769 1436 aa11.11□□□□□ -0.63
CPS1-202ENST00000417946 UBTFP17480 764 aaKnown RBP11.08□□□□□ -0.64
CPS1-202ENST00000417946 REM2Q8IYK8 340 aaPredicted RBP11.08□□□□□ -0.64
CPS1-202ENST00000417946 IQGAP2Q13576 1575 aa11.07□□□□□ -0.64
CPS1-202ENST00000417946 SAMD9Q5K651 1589 aa11.07□□□□□ -0.64
CPS1-202ENST00000417946 ARHGAP35Q9NRY4 1499 aa11.06□□□□□ -0.64
CPS1-202ENST00000417946 CLIP1P30622 1438 aa11.06□□□□□ -0.64
CPS1-202ENST00000417946 ARAP1Q96P48 1450 aa11.06□□□□□ -0.64
CPS1-202ENST00000417946 KIAA0586Q9BVV6 1533 aa11.05□□□□□ -0.64
CPS1-202ENST00000417946 SPDYE2BA6NHP3 402 aa11.05□□□□□ -0.64
CPS1-202ENST00000417946 SPDYE6P0CI01 402 aa11.05□□□□□ -0.64
CPS1-202ENST00000417946 SPDYE2Q495Y8 402 aa11.05□□□□□ -0.64
CPS1-202ENST00000417946 CLASP1Q7Z460 1538 aa11.04□□□□□ -0.64
CPS1-202ENST00000417946 UGGT2Q9NYU1 1516 aa11.04□□□□□ -0.64
CPS1-202ENST00000417946 SHROOM2Q13796 1616 aa11.03□□□□□ -0.64
CPS1-202ENST00000417946 EFCAB5A4FU69 1503 aa11.03□□□□□ -0.64
CPS1-202ENST00000417946 CHMP7Q8WUX9 453 aaPredicted RBP11.02□□□□□ -0.65
CPS1-202ENST00000417946 DISP1Q96F81 1524 aa11□□□□□ -0.65
CPS1-202ENST00000417946 KIAA0556O60303 1618 aa10.99□□□□□ -0.65
CPS1-202ENST00000417946 FHOD3Q2V2M9 1422 aa10.97□□□□□ -0.65
CPS1-202ENST00000417946 VPS8Q8N3P4 1428 aa10.96□□□□□ -0.65
CPS1-202ENST00000417946 ERCC6L2Q5T890 1561 aa10.95□□□□□ -0.66
CPS1-202ENST00000417946 RANGAP1P46060 587 aaPredicted RBP10.95□□□□□ -0.66
CPS1-202ENST00000417946 PCF11O94913 1555 aaKnown RBP10.94□□□□□ -0.66
CPS1-202ENST00000417946 PITPNM1O00562 1244 aa10.92□□□□□ -0.66
CPS1-202ENST00000417946 LRRIQ1Q96JM4 1722 aa10.92□□□□□ -0.66
CPS1-202ENST00000417946 ZNF692Q9BU19 519 aaPredicted RBP10.91□□□□□ -0.66
CPS1-202ENST00000417946 PIP4P2Q8N4L2 257 aa10.9□□□□□ -0.66
CPS1-202ENST00000417946 JPH4Q96JJ6 628 aa10.89□□□□□ -0.67
CPS1-202ENST00000417946 PRG4Q92954 1404 aaPredicted RBP10.89□□□□□ -0.67
CPS1-202ENST00000417946 P3H3Q8IVL6 736 aa10.88□□□□□ -0.67
CPS1-202ENST00000417946 SPDYE1Q8NFV5 336 aaPredicted RBP10.88□□□□□ -0.67
CPS1-202ENST00000417946 CFAP43Q8NDM7 1665 aa10.88□□□□□ -0.67
CPS1-202ENST00000417946 CASKIN1Q8WXD9 1431 aa10.87□□□□□ -0.67
CPS1-202ENST00000417946 FYCO1Q9BQS8 1478 aa10.87□□□□□ -0.67
CPS1-202ENST00000417946 FMN1Q68DA7 1419 aa10.86□□□□□ -0.67
CPS1-202ENST00000417946 ABCA8O94911 1581 aa10.86□□□□□ -0.67
CPS1-202ENST00000417946 FXR2P51116 673 aaKnown RBP eCLIP10.85□□□□□ -0.67
CPS1-202ENST00000417946 CARMIL2Q6F5E8 1435 aa10.84□□□□□ -0.67
CPS1-202ENST00000417946 RAPGEF6Q8TEU7 1601 aa10.84□□□□□ -0.67
CPS1-202ENST00000417946 TIAM1Q13009 1591 aa10.84□□□□□ -0.67
CPS1-202ENST00000417946 MKRN4PQ13434 485 aaPredicted RBP10.83□□□□□ -0.68
CPS1-202ENST00000417946 CLEC11AQ9Y240 323 aa10.83□□□□□ -0.68
CPS1-202ENST00000417946 HECW1Q76N89 1606 aa10.83□□□□□ -0.68
CPS1-202ENST00000417946 MAP3K1Q13233 1512 aa10.83□□□□□ -0.68
CPS1-202ENST00000417946 NUP153P49790 1475 aaKnown RBP10.82□□□□□ -0.68
CPS1-202ENST00000417946 PLB1Q6P1J6 1458 aa10.82□□□□□ -0.68
CPS1-202ENST00000417946 HAX1O00165 279 aa10.81□□□□□ -0.68
CPS1-202ENST00000417946 MAGI3Q5TCQ9 1506 aa10.79□□□□□ -0.68
CPS1-202ENST00000417946 SP7Q8TDD2 431 aaPredicted RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms