RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PRG4Q92954 1404 aaPredicted RBP23.79■■□□□ 1.4
USP4-203ENST00000415188 JPH4Q96JJ6 628 aa23.79■■□□□ 1.4
USP4-203ENST00000415188 RUSC2Q8N2Y8 1516 aa23.78■■□□□ 1.4
USP4-203ENST00000415188 CUL7Q14999 1698 aa23.73■■□□□ 1.39
USP4-203ENST00000415188 CARMIL1Q5VZK9 1371 aa23.68■■□□□ 1.38
USP4-203ENST00000415188 KIAA0586Q9BVV6 1533 aa23.67■■□□□ 1.38
USP4-203ENST00000415188 HRCP23327 699 aa23.57■■□□□ 1.36
USP4-203ENST00000415188 PCGF6Q9BYE7 350 aa23.56■■□□□ 1.36
USP4-203ENST00000415188 ADCY10Q96PN6 1610 aa23.49■■□□□ 1.35
USP4-203ENST00000415188 FAM9AQ8IZU1 332 aaPredicted RBP23.48■■□□□ 1.35
USP4-203ENST00000415188 IQGAP2Q13576 1575 aa23.46■■□□□ 1.35
USP4-203ENST00000415188 RAPGEF2Q9Y4G8 1499 aa23.46■■□□□ 1.35
USP4-203ENST00000415188 TRIM26Q12899 539 aaPredicted RBP23.46■■□□□ 1.35
USP4-203ENST00000415188 TTBK1Q5TCY1 1321 aaPredicted RBP23.46■■□□□ 1.35
USP4-203ENST00000415188 NPM1P06748 294 aaKnown RBP eCLIP23.45■■□□□ 1.34
USP4-203ENST00000415188 KIF13AQ9H1H9 1805 aa23.44■■□□□ 1.34
USP4-203ENST00000415188 PTPRGP23470 1445 aa23.43■■□□□ 1.34
USP4-203ENST00000415188 EEA1Q15075 1411 aa23.41■■□□□ 1.34
USP4-203ENST00000415188 CARMIL2Q6F5E8 1435 aa23.41■■□□□ 1.34
USP4-203ENST00000415188 MAPKBP1O60336 1514 aa23.4■■□□□ 1.34
USP4-203ENST00000415188 TNIKQ9UKE5 1360 aa23.4■■□□□ 1.34
USP4-203ENST00000415188 ABCC10Q5T3U5 1492 aa23.38■■□□□ 1.33
USP4-203ENST00000415188 FAM69CQ0P6D2 419 aa23.37■■□□□ 1.33
USP4-203ENST00000415188 DISP1Q96F81 1524 aa23.37■■□□□ 1.33
USP4-203ENST00000415188 UGGT2Q9NYU1 1516 aa23.33■■□□□ 1.33
USP4-203ENST00000415188 DIP2BQ9P265 1576 aa23.32■■□□□ 1.32
USP4-203ENST00000415188 ABCC2Q92887 1545 aa23.28■■□□□ 1.32
USP4-203ENST00000415188 PRXQ9BXM0 1461 aa23.27■■□□□ 1.32
USP4-203ENST00000415188 UACAQ9BZF9 1416 aa23.26■■□□□ 1.31
USP4-203ENST00000415188 KIAA0556O60303 1618 aa23.26■■□□□ 1.31
USP4-203ENST00000415188 UHRF1BP1LA0JNW5 1464 aa23.25■■□□□ 1.31
USP4-203ENST00000415188 CTTNBP2Q8WZ74 1663 aa23.23■■□□□ 1.31
USP4-203ENST00000415188 ASXL2Q76L83 1435 aa23.2■■□□□ 1.3
USP4-203ENST00000415188 PLB1Q6P1J6 1458 aa23.16■■□□□ 1.3
USP4-203ENST00000415188 TSPOAP1O95153 1857 aa23.15■■□□□ 1.3
USP4-203ENST00000415188 KDM5BQ9UGL1 1544 aa23.15■■□□□ 1.3
USP4-203ENST00000415188 CSRNP3Q8WYN3 585 aa23.14■■□□□ 1.29
USP4-203ENST00000415188 GOLGA3Q08378 1498 aa23.13■■□□□ 1.29
USP4-203ENST00000415188 ZCCHC11Q5TAX3 1644 aaKnown RBP23.11■■□□□ 1.29
USP4-203ENST00000415188 AEBP2Q6ZN18 517 aaPredicted RBP23.11■■□□□ 1.29
USP4-203ENST00000415188 GLI2P10070 1586 aa23.08■■□□□ 1.28
USP4-203ENST00000415188 KDM6BO15054 1643 aa23.07■■□□□ 1.28
USP4-203ENST00000415188 KIF21BO75037 1637 aa23.07■■□□□ 1.28
USP4-203ENST00000415188 EPRSP07814 1512 aaKnown RBP23.05■■□□□ 1.28
USP4-203ENST00000415188 EHMT2Q96KQ7 1210 aa23.05■■□□□ 1.28
USP4-203ENST00000415188 ABCA8O94911 1581 aa23.04■■□□□ 1.28
USP4-203ENST00000415188 P3H3Q8IVL6 736 aa23.04■■□□□ 1.28
USP4-203ENST00000415188 CEP162Q5TB80 1403 aa23.03■■□□□ 1.28
USP4-203ENST00000415188 PPRC1Q5VV67 1664 aaKnown RBP23.03■■□□□ 1.28
USP4-203ENST00000415188 ZEB1P37275 1124 aaPredicted RBP22.99■■□□□ 1.27
USP4-203ENST00000415188 WDR7Q9Y4E6 1490 aa22.99■■□□□ 1.27
USP4-203ENST00000415188 MAP3K4Q9Y6R4 1608 aa22.96■■□□□ 1.27
USP4-203ENST00000415188 ARID3CA6NKF2 412 aa22.94■■□□□ 1.26
USP4-203ENST00000415188 SAMD9Q5K651 1589 aa22.94■■□□□ 1.26
USP4-203ENST00000415188 RANGAP1P46060 587 aaPredicted RBP22.93■■□□□ 1.26
USP4-203ENST00000415188 KCNH8Q96L42 1107 aa22.92■■□□□ 1.26
USP4-203ENST00000415188 COL17A1Q9UMD9 1497 aaPredicted RBP22.9■■□□□ 1.26
USP4-203ENST00000415188 TEX14Q8IWB6 1497 aa22.87■■□□□ 1.25
USP4-203ENST00000415188 ATP10BO94823 1461 aa22.86■■□□□ 1.25
USP4-203ENST00000415188 FHOD3Q2V2M9 1422 aa22.84■■□□□ 1.25
USP4-203ENST00000415188 CD109Q6YHK3 1445 aa22.83■■□□□ 1.25
USP4-203ENST00000415188 UBTFP17480 764 aaKnown RBP22.83■■□□□ 1.25
USP4-203ENST00000415188 KDM4FA0A1W2PPD8 638 aa22.82■■□□□ 1.24
USP4-203ENST00000415188 RAPGEF6Q8TEU7 1601 aa22.82■■□□□ 1.24
USP4-203ENST00000415188 CFAP43Q8NDM7 1665 aa22.8■■□□□ 1.24
USP4-203ENST00000415188 MAGI3Q5TCQ9 1506 aa22.79■■□□□ 1.24
USP4-203ENST00000415188 PPARGC1BQ86YN6 1023 aaKnown RBP22.77■■□□□ 1.24
USP4-203ENST00000415188 NUP153P49790 1475 aaKnown RBP22.76■■□□□ 1.23
USP4-203ENST00000415188 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.74■■□□□ 1.23
USP4-203ENST00000415188 HNRNPUL2Q1KMD3 747 aaKnown RBP22.74■■□□□ 1.23
USP4-203ENST00000415188 EFCAB5A4FU69 1503 aa22.72■■□□□ 1.23
USP4-203ENST00000415188 CLIP1P30622 1438 aa22.69■■□□□ 1.22
USP4-203ENST00000415188 ABCA9Q8IUA7 1624 aa22.67■■□□□ 1.22
USP4-203ENST00000415188 ADGRL1O94910 1474 aa22.66■■□□□ 1.22
USP4-203ENST00000415188 VPS8Q8N3P4 1428 aa22.63■■□□□ 1.21
USP4-203ENST00000415188 ARAP3Q8WWN8 1544 aa22.61■■□□□ 1.21
USP4-203ENST00000415188 PLEKHD1A6NEE1 506 aa22.6■■□□□ 1.21
USP4-203ENST00000415188 ARHGAP35Q9NRY4 1499 aa22.6■■□□□ 1.21
USP4-203ENST00000415188 CDK13Q14004 1512 aaKnown RBP22.57■■□□□ 1.2
USP4-203ENST00000415188 PHLDB1Q86UU1 1377 aa22.55■■□□□ 1.2
USP4-203ENST00000415188 NEO1Q92859 1461 aa22.54■■□□□ 1.2
USP4-203ENST00000415188 RAPGEF3O95398 923 aa22.54■■□□□ 1.2
USP4-203ENST00000415188 ATP1B4Q9UN42 357 aaPredicted RBP22.53■■□□□ 1.2
USP4-203ENST00000415188 FMN1Q68DA7 1419 aa22.52■■□□□ 1.2
USP4-203ENST00000415188 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.51■■□□□ 1.19
USP4-203ENST00000415188 TTC37Q6PGP7 1564 aa22.49■■□□□ 1.19
USP4-203ENST00000415188 HECW1Q76N89 1606 aa22.48■■□□□ 1.19
USP4-203ENST00000415188 FRMPD1Q5SYB0 1578 aa22.47■■□□□ 1.19
USP4-203ENST00000415188 FANCAO15360 1455 aa22.44■■□□□ 1.18
USP4-203ENST00000415188 AKNAQ7Z591 1439 aa22.44■■□□□ 1.18
USP4-203ENST00000415188 DENND4BO75064 1496 aaPredicted RBP22.4■■□□□ 1.18
USP4-203ENST00000415188 APLP2Q06481 763 aa22.38■■□□□ 1.17
USP4-203ENST00000415188 CCER1Q8TC90 406 aaPredicted RBP22.38■■□□□ 1.17
USP4-203ENST00000415188 CFAP74Q9C0B2 1584 aa22.38■■□□□ 1.17
USP4-203ENST00000415188 CDK11AQ9UQ88 783 aaPredicted RBP22.37■■□□□ 1.17
USP4-203ENST00000415188 RICTORQ6R327 1708 aa22.36■■□□□ 1.17
USP4-203ENST00000415188 LRRIQ1Q96JM4 1722 aa22.36■■□□□ 1.17
USP4-203ENST00000415188 PLCH2O75038 1416 aa22.36■■□□□ 1.17
USP4-203ENST00000415188 KIF14Q15058 1648 aa22.35■■□□□ 1.17
USP4-203ENST00000415188 TROQ12816 1431 aaPredicted RBP22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms