RNA–Protein interactions for RNA: ENST00000412507.1

TRIM56-202, Transcript of tripartite motif containing 56, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene TRIM56, Length 1,129 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-202ENST00000412507 JPH4Q96JJ6 628 aa31.97■■■□□ 2.71
TRIM56-202ENST00000412507 KIAA0586Q9BVV6 1533 aa31.95■■■□□ 2.71
TRIM56-202ENST00000412507 PRG4Q92954 1404 aaPredicted RBP31.95■■■□□ 2.71
TRIM56-202ENST00000412507 RAPGEF2Q9Y4G8 1499 aa31.89■■■□□ 2.7
TRIM56-202ENST00000412507 IQGAP2Q13576 1575 aa31.81■■■□□ 2.68
TRIM56-202ENST00000412507 CTTNBP2Q8WZ74 1663 aa31.76■■■□□ 2.67
TRIM56-202ENST00000412507 PRXQ9BXM0 1461 aa31.72■■■□□ 2.67
TRIM56-202ENST00000412507 CHIC1Q5VXU3 224 aa31.67■■■□□ 2.66
TRIM56-202ENST00000412507 TRHP20396 242 aaPredicted RBP31.66■■■□□ 2.66
TRIM56-202ENST00000412507 CSRNP3Q8WYN3 585 aa31.63■■■□□ 2.65
TRIM56-202ENST00000412507 EEA1Q15075 1411 aa31.61■■■□□ 2.65
TRIM56-202ENST00000412507 CARMIL2Q6F5E8 1435 aa31.61■■■□□ 2.65
TRIM56-202ENST00000412507 UGGT2Q9NYU1 1516 aa31.59■■■□□ 2.65
TRIM56-202ENST00000412507 DISP1Q96F81 1524 aa31.57■■■□□ 2.64
TRIM56-202ENST00000412507 ADCY10Q96PN6 1610 aa31.56■■■□□ 2.64
TRIM56-202ENST00000412507 FAM9AQ8IZU1 332 aaPredicted RBP31.54■■■□□ 2.64
TRIM56-202ENST00000412507 TNIKQ9UKE5 1360 aa31.53■■■□□ 2.64
TRIM56-202ENST00000412507 TTBK1Q5TCY1 1321 aaPredicted RBP31.52■■■□□ 2.64
TRIM56-202ENST00000412507 PTPRGP23470 1445 aa31.52■■■□□ 2.64
TRIM56-202ENST00000412507 KIAA0556O60303 1618 aa31.52■■■□□ 2.64
TRIM56-202ENST00000412507 KIF13AQ9H1H9 1805 aa31.42■■■□□ 2.62
TRIM56-202ENST00000412507 NPM1P06748 294 aaKnown RBP eCLIP31.4■■■□□ 2.62
TRIM56-202ENST00000412507 KIF21BO75037 1637 aa31.39■■■□□ 2.62
TRIM56-202ENST00000412507 GOLGA3Q08378 1498 aa31.38■■■□□ 2.61
TRIM56-202ENST00000412507 MAPKBP1O60336 1514 aa31.34■■■□□ 2.61
TRIM56-202ENST00000412507 UACAQ9BZF9 1416 aa31.32■■■□□ 2.6
TRIM56-202ENST00000412507 ABCC2Q92887 1545 aa31.29■■■□□ 2.6
TRIM56-202ENST00000412507 UHRF1BP1LA0JNW5 1464 aa31.29■■■□□ 2.6
TRIM56-202ENST00000412507 SAMD9Q5K651 1589 aa31.24■■■□□ 2.59
TRIM56-202ENST00000412507 DIP2BQ9P265 1576 aa31.22■■■□□ 2.59
TRIM56-202ENST00000412507 ABCC10Q5T3U5 1492 aa31.21■■■□□ 2.59
TRIM56-202ENST00000412507 P3H3Q8IVL6 736 aa31.19■■■□□ 2.58
TRIM56-202ENST00000412507 ZCCHC11Q5TAX3 1644 aaKnown RBP31.19■■■□□ 2.58
TRIM56-202ENST00000412507 EHMT2Q96KQ7 1210 aa31.18■■■□□ 2.58
TRIM56-202ENST00000412507 PLB1Q6P1J6 1458 aa31.18■■■□□ 2.58
TRIM56-202ENST00000412507 ABCA8O94911 1581 aa31.17■■■□□ 2.58
TRIM56-202ENST00000412507 KDM5BQ9UGL1 1544 aa31.16■■■□□ 2.58
TRIM56-202ENST00000412507 RANGAP1P46060 587 aaPredicted RBP31.15■■■□□ 2.58
TRIM56-202ENST00000412507 FAM69CQ0P6D2 419 aa31.15■■■□□ 2.58
TRIM56-202ENST00000412507 TSPOAP1O95153 1857 aa31.12■■■□□ 2.57
TRIM56-202ENST00000412507 ASXL2Q76L83 1435 aa31.11■■■□□ 2.57
TRIM56-202ENST00000412507 UBTFP17480 764 aaKnown RBP31.08■■■□□ 2.57
TRIM56-202ENST00000412507 EFCAB5A4FU69 1503 aa31.02■■■□□ 2.56
TRIM56-202ENST00000412507 FHOD3Q2V2M9 1422 aa31.01■■■□□ 2.55
TRIM56-202ENST00000412507 RAPGEF6Q8TEU7 1601 aa31■■■□□ 2.55
TRIM56-202ENST00000412507 GLI2P10070 1586 aa30.97■■■□□ 2.55
TRIM56-202ENST00000412507 EPRSP07814 1512 aaKnown RBP30.93■■■□□ 2.54
TRIM56-202ENST00000412507 WDR7Q9Y4E6 1490 aa30.91■■■□□ 2.54
TRIM56-202ENST00000412507 PPRC1Q5VV67 1664 aaKnown RBP30.9■■■□□ 2.54
TRIM56-202ENST00000412507 ARID3CA6NKF2 412 aa30.9■■■□□ 2.54
TRIM56-202ENST00000412507 ATP10BO94823 1461 aa30.88■■■□□ 2.53
TRIM56-202ENST00000412507 MAP3K4Q9Y6R4 1608 aa30.87■■■□□ 2.53
TRIM56-202ENST00000412507 ARHGAP35Q9NRY4 1499 aa30.84■■■□□ 2.53
TRIM56-202ENST00000412507 NUP153P49790 1475 aaKnown RBP30.82■■■□□ 2.53
TRIM56-202ENST00000412507 KCNH8Q96L42 1107 aa30.79■■■□□ 2.52
TRIM56-202ENST00000412507 CFAP43Q8NDM7 1665 aa30.78■■■□□ 2.52
TRIM56-202ENST00000412507 KDM6BO15054 1643 aa30.78■■■□□ 2.52
TRIM56-202ENST00000412507 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.73■■■□□ 2.51
TRIM56-202ENST00000412507 HNRNPUL2Q1KMD3 747 aaKnown RBP30.73■■■□□ 2.51
TRIM56-202ENST00000412507 FMN1Q68DA7 1419 aa30.7■■■□□ 2.5
TRIM56-202ENST00000412507 TEX14Q8IWB6 1497 aa30.66■■■□□ 2.5
TRIM56-202ENST00000412507 HECW1Q76N89 1606 aa30.65■■■□□ 2.5
TRIM56-202ENST00000412507 CD109Q6YHK3 1445 aa30.64■■■□□ 2.5
TRIM56-202ENST00000412507 ABCA9Q8IUA7 1624 aa30.63■■■□□ 2.49
TRIM56-202ENST00000412507 CDK13Q14004 1512 aaKnown RBP30.63■■■□□ 2.49
TRIM56-202ENST00000412507 LRRIQ1Q96JM4 1722 aa30.62■■■□□ 2.49
TRIM56-202ENST00000412507 MAGI3Q5TCQ9 1506 aa30.6■■■□□ 2.49
TRIM56-202ENST00000412507 ATP1B4Q9UN42 357 aaPredicted RBP30.6■■■□□ 2.49
TRIM56-202ENST00000412507 CLIP1P30622 1438 aa30.57■■■□□ 2.48
TRIM56-202ENST00000412507 PLEKHD1A6NEE1 506 aa30.56■■■□□ 2.48
TRIM56-202ENST00000412507 COL17A1Q9UMD9 1497 aaPredicted RBP30.53■■■□□ 2.48
TRIM56-202ENST00000412507 PCF11O94913 1555 aaKnown RBP30.53■■■□□ 2.48
TRIM56-202ENST00000412507 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.45■■■□□ 2.473e-6■■■□□ 18.5
TRIM56-202ENST00000412507 CASKIN1Q8WXD9 1431 aa30.45■■■□□ 2.46
TRIM56-202ENST00000412507 TTC37Q6PGP7 1564 aa30.44■■■□□ 2.46
TRIM56-202ENST00000412507 LOC105371045A0A1W2PR82 267 aa30.4■■■□□ 2.46
TRIM56-202ENST00000412507 CEP162Q5TB80 1403 aa30.39■■■□□ 2.46
TRIM56-202ENST00000412507 FYCO1Q9BQS8 1478 aa30.38■■■□□ 2.45
TRIM56-202ENST00000412507 CDK11AQ9UQ88 783 aaPredicted RBP30.37■■■□□ 2.45
TRIM56-202ENST00000412507 CCDC18Q5T9S5 1454 aa30.36■■■□□ 2.45
TRIM56-202ENST00000412507 KIF14Q15058 1648 aa30.36■■■□□ 2.45
TRIM56-202ENST00000412507 ARAP3Q8WWN8 1544 aa30.35■■■□□ 2.45
TRIM56-202ENST00000412507 NEO1Q92859 1461 aa30.34■■■□□ 2.45
TRIM56-202ENST00000412507 MYO5CQ9NQX4 1742 aa30.33■■■□□ 2.45
TRIM56-202ENST00000412507 TROQ12816 1431 aaPredicted RBP30.32■■■□□ 2.44
TRIM56-202ENST00000412507 PHLDB1Q86UU1 1377 aa30.3■■■□□ 2.44
TRIM56-202ENST00000412507 CFAP74Q9C0B2 1584 aa30.3■■■□□ 2.44
TRIM56-202ENST00000412507 FANCAO15360 1455 aa30.25■■■□□ 2.43
TRIM56-202ENST00000412507 AKNAQ7Z591 1439 aa30.22■■■□□ 2.43
TRIM56-202ENST00000412507 PLCH2O75038 1416 aa30.21■■■□□ 2.43
TRIM56-202ENST00000412507 FRMPD1Q5SYB0 1578 aa30.2■■■□□ 2.43
TRIM56-202ENST00000412507 RICTORQ6R327 1708 aa30.2■■■□□ 2.43
TRIM56-202ENST00000412507 AEBP2Q6ZN18 517 aaPredicted RBP30.19■■■□□ 2.42
TRIM56-202ENST00000412507 CDC42BPBQ9Y5S2 1711 aa30.19■■■□□ 2.42
TRIM56-202ENST00000412507 RAPGEF3O95398 923 aa30.18■■■□□ 2.42
TRIM56-202ENST00000412507 CDC42BPAQ5VT25 1732 aa30.14■■■□□ 2.42
TRIM56-202ENST00000412507 DENND4BO75064 1496 aaPredicted RBP30.13■■■□□ 2.41
TRIM56-202ENST00000412507 PREX2Q70Z35 1606 aa30.12■■■□□ 2.41
TRIM56-202ENST00000412507 ARHGAP5Q13017 1502 aa30.11■■■□□ 2.41
TRIM56-202ENST00000412507 KDM4FA0A1W2PPD8 638 aa30.1■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms