RNA–Protein interactions for RNA: ENST00000412507.1

TRIM56-202, Transcript of tripartite motif containing 56, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene TRIM56, Length 1,129 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-202ENST00000412507 NISCHQ9Y2I1 1504 aa46.15■■■■■ 4.98
TRIM56-202ENST00000412507 CCDC180Q9P1Z9 1646 aa41.19■■■■■ 4.18
TRIM56-202ENST00000412507 ABCC9O60706 1549 aa40.43■■■■■ 4.06
TRIM56-202ENST00000412507 RB1CC1Q8TDY2 1594 aa38.81■■■■□ 3.8
TRIM56-202ENST00000412507 NACADO15069 1562 aa38.7■■■■□ 3.79
TRIM56-202ENST00000412507 DCAF8L2P0C7V8 631 aa38.64■■■■□ 3.78
TRIM56-202ENST00000412507 ZCCHC6Q5VYS8 1495 aaKnown RBP38.4■■■■□ 3.74
TRIM56-202ENST00000412507 MYO15BQ96JP2 1530 aa38.36■■■■□ 3.73
TRIM56-202ENST00000412507 DCAF1Q9Y4B6 1507 aa38.14■■■■□ 3.7
TRIM56-202ENST00000412507 UNC13AQ9UPW8 1703 aa38.13■■■■□ 3.69
TRIM56-202ENST00000412507 PABPN1Q86U42 306 aaKnown RBP eCLIP37.72■■■■□ 3.63
TRIM56-202ENST00000412507 BICRAQ9NZM4 1560 aa37.68■■■■□ 3.62
TRIM56-202ENST00000412507 SCRIBQ14160 1630 aa37.58■■■■□ 3.61
TRIM56-202ENST00000412507 DNAJC5BQ9UF47 199 aa37.26■■■■□ 3.56
TRIM56-202ENST00000412507 SHROOM4Q9ULL8 1493 aa37.14■■■■□ 3.54
TRIM56-202ENST00000412507 EIF4G1Q04637 1599 aaKnown RBP36.67■■■■□ 3.46
TRIM56-202ENST00000412507 CC2D2AQ9P2K1 1620 aa36.6■■■■□ 3.45
TRIM56-202ENST00000412507 CECR2Q9BXF3 1484 aa36.32■■■■□ 3.41
TRIM56-202ENST00000412507 SMARCA4P51532 1647 aa35.9■■■■□ 3.34
TRIM56-202ENST00000412507 BAZ1AQ9NRL2 1556 aaPredicted RBP35.79■■■■□ 3.32
TRIM56-202ENST00000412507 ATAD2BQ9ULI0 1458 aa35.68■■■■□ 3.3
TRIM56-202ENST00000412507 NCAPD3P42695 1498 aa35.67■■■■□ 3.3
TRIM56-202ENST00000412507 SMARCA2P51531 1590 aa35.65■■■■□ 3.3
TRIM56-202ENST00000412507 MROH2BQ7Z745 1585 aa35.59■■■■□ 3.29
TRIM56-202ENST00000412507 HMGXB3Q12766 1538 aa35.52■■■■□ 3.28
TRIM56-202ENST00000412507 PEG3Q9GZU2 1588 aa35.51■■■■□ 3.27
TRIM56-202ENST00000412507 BAZ1BQ9UIG0 1483 aaKnown RBP35.4■■■■□ 3.26
TRIM56-202ENST00000412507 WIZO95785 1651 aa35.27■■■■□ 3.24
TRIM56-202ENST00000412507 RSF1Q96T23 1441 aaPredicted RBP35.07■■■■□ 3.21
TRIM56-202ENST00000412507 NESP48681 1621 aa34.95■■■■□ 3.19
TRIM56-202ENST00000412507 ERCC6Q03468 1493 aa34.84■■■■□ 3.17
TRIM56-202ENST00000412507 LAMC3Q9Y6N6 1575 aa34.82■■■■□ 3.16
TRIM56-202ENST00000412507 TOP2AP11388 1531 aaKnown RBP34.81■■■■□ 3.16
TRIM56-202ENST00000412507 KIF21AQ7Z4S6 1674 aa34.64■■■■□ 3.14
TRIM56-202ENST00000412507 CADPSQ9ULU8 1353 aa34.62■■■■□ 3.13
TRIM56-202ENST00000412507 PDS5BQ9NTI5 1447 aa34.53■■■■□ 3.12
TRIM56-202ENST00000412507 CUX2O14529 1486 aa34.52■■■■□ 3.12
TRIM56-202ENST00000412507 THOC2Q8NI27 1593 aaKnown RBP34.49■■■■□ 3.11
TRIM56-202ENST00000412507 CCDC88BA6NC98 1476 aa34.39■■■■□ 3.1
TRIM56-202ENST00000412507 CFTRP13569 1480 aa34.39■■■■□ 3.1
TRIM56-202ENST00000412507 PRDM2Q13029 1718 aa34.33■■■■□ 3.09
TRIM56-202ENST00000412507 FANCD2Q9BXW9 1451 aa34.26■■■■□ 3.07
TRIM56-202ENST00000412507 CEP164Q9UPV0 1460 aa34.24■■■■□ 3.07
TRIM56-202ENST00000412507 MRC2Q9UBG0 1479 aa34.22■■■■□ 3.07
TRIM56-202ENST00000412507 WDR62O43379 1518 aa34.13■■■■□ 3.05
TRIM56-202ENST00000412507 SUPT5HO00267 1087 aaKnown RBP34.08■■■■□ 3.05
TRIM56-202ENST00000412507 URB2Q14146 1524 aaKnown RBP33.95■■■■□ 3.03
TRIM56-202ENST00000412507 TOPBP1Q92547 1522 aa33.71■■■□□ 2.99
TRIM56-202ENST00000412507 DNMBPQ6XZF7 1577 aa33.67■■■□□ 2.98
TRIM56-202ENST00000412507 DNAJC5Q9H3Z4 198 aa33.66■■■□□ 2.98
TRIM56-202ENST00000412507 ABCC8Q09428 1581 aa33.65■■■□□ 2.98
TRIM56-202ENST00000412507 IFT140Q96RY7 1462 aa33.5■■■□□ 2.95
TRIM56-202ENST00000412507 ZNF608Q9ULD9 1512 aaPredicted RBP33.41■■■□□ 2.94
TRIM56-202ENST00000412507 POLA1P09884 1462 aaPredicted RBP33.4■■■□□ 2.94
TRIM56-202ENST00000412507 TARBP1Q13395 1621 aaKnown RBP33.39■■■□□ 2.94
TRIM56-202ENST00000412507 CUX1P39880 1505 aa33.39■■■□□ 2.94
TRIM56-202ENST00000412507 EIF4G3O43432 1585 aaKnown RBP33.32■■■□□ 2.92
TRIM56-202ENST00000412507 FGD5Q6ZNL6 1462 aa33.31■■■□□ 2.92
TRIM56-202ENST00000412507 RAD54L2Q9Y4B4 1467 aa33.28■■■□□ 2.92
TRIM56-202ENST00000412507 SOGA1O94964 1423 aa33.24■■■□□ 2.91
TRIM56-202ENST00000412507 AQRO60306 1485 aaKnown RBP eCLIP33.19■■■□□ 2.9
TRIM56-202ENST00000412507 WDR97A6NE52 1622 aa33.13■■■□□ 2.89
TRIM56-202ENST00000412507 BIVM-ERCC5R4GMW8 1640 aa33.12■■■□□ 2.89
TRIM56-202ENST00000412507 TDRD9Q8NDG6 1382 aaKnown RBP33.09■■■□□ 2.89
TRIM56-202ENST00000412507 TOP2BQ02880 1626 aa33.08■■■□□ 2.89
TRIM56-202ENST00000412507 SYNJ1O43426 1573 aa33.08■■■□□ 2.89
TRIM56-202ENST00000412507 WRNQ14191 1432 aaPredicted RBP eCLIP33.07■■■□□ 2.883e-7■■□□□ 13.1
TRIM56-202ENST00000412507 OSCARQ8IYS5 282 aa33.04■■■□□ 2.88
TRIM56-202ENST00000412507 CHD1O14646 1710 aa33.02■■■□□ 2.88
TRIM56-202ENST00000412507 PBRM1Q86U86 1689 aa32.95■■■□□ 2.87
TRIM56-202ENST00000412507 ABCA10Q8WWZ4 1543 aa32.95■■■□□ 2.87
TRIM56-202ENST00000412507 ABCA5Q8WWZ7 1642 aa32.89■■■□□ 2.86
TRIM56-202ENST00000412507 SNAPC4Q5SXM2 1469 aa32.88■■■□□ 2.85
TRIM56-202ENST00000412507 GRIN2BQ13224 1484 aa32.87■■■□□ 2.85
TRIM56-202ENST00000412507 GAPVD1Q14C86 1478 aa32.86■■■□□ 2.85
TRIM56-202ENST00000412507 FBLN2P98095 1184 aa32.82■■■□□ 2.84
TRIM56-202ENST00000412507 MAGI1Q96QZ7 1491 aaPredicted RBP32.8■■■□□ 2.84
TRIM56-202ENST00000412507 SYNJ2O15056 1496 aa32.68■■■□□ 2.82
TRIM56-202ENST00000412507 CHMP7Q8WUX9 453 aaPredicted RBP32.68■■■□□ 2.82
TRIM56-202ENST00000412507 RIMBP3CA6NJZ7 1639 aa32.65■■■□□ 2.82
TRIM56-202ENST00000412507 RIMBP3BA6NNM3 1639 aa32.65■■■□□ 2.82
TRIM56-202ENST00000412507 RIMBP3Q9UFD9 1639 aa32.65■■■□□ 2.82
TRIM56-202ENST00000412507 ADAMTS12P58397 1594 aa32.58■■■□□ 2.81
TRIM56-202ENST00000412507 ARHGEF11O15085 1522 aa32.56■■■□□ 2.8
TRIM56-202ENST00000412507 ERICH3Q5RHP9 1530 aa32.56■■■□□ 2.8
TRIM56-202ENST00000412507 CLASP1Q7Z460 1538 aa32.53■■■□□ 2.8
TRIM56-202ENST00000412507 TRIM41Q8WV44 630 aa32.53■■■□□ 2.8
TRIM56-202ENST00000412507 GRIN2AQ12879 1464 aa32.47■■■□□ 2.79
TRIM56-202ENST00000412507 FHAD1B1AJZ9 1412 aa32.45■■■□□ 2.79
TRIM56-202ENST00000412507 KIF27Q86VH2 1401 aa32.38■■■□□ 2.77
TRIM56-202ENST00000412507 CEP170Q5SW79 1584 aa32.36■■■□□ 2.77
TRIM56-202ENST00000412507 NUP160Q12769 1436 aa32.31■■■□□ 2.76
TRIM56-202ENST00000412507 CUL7Q14999 1698 aa32.29■■■□□ 2.76
TRIM56-202ENST00000412507 ARAP1Q96P48 1450 aa32.28■■■□□ 2.76
TRIM56-202ENST00000412507 IGF1RP08069 1367 aa32.27■■■□□ 2.76
TRIM56-202ENST00000412507 CYB5RLQ6IPT4 315 aa32.24■■■□□ 2.75
TRIM56-202ENST00000412507 SHROOM2Q13796 1616 aa32.16■■■□□ 2.74
TRIM56-202ENST00000412507 ERCC6L2Q5T890 1561 aa32.12■■■□□ 2.73
TRIM56-202ENST00000412507 RUSC2Q8N2Y8 1516 aa32.11■■■□□ 2.73
TRIM56-202ENST00000412507 CARMIL1Q5VZK9 1371 aa32.08■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms