RNA–Protein interactions for RNA: ENST00000409828.7

PAX3-208, Transcript of paired box 3, humanhuman

TSL 1 (best) BASIC

Gene PAX3, Length 1,254 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PAX3-208ENST00000409828 SHROOM2Q13796 1616 aa30.03■■■□□ 2.4
PAX3-208ENST00000409828 ARHGEF11O15085 1522 aa29.96■■■□□ 2.39
PAX3-208ENST00000409828 CTTNBP2Q8WZ74 1663 aa29.95■■■□□ 2.38
PAX3-208ENST00000409828 IQGAP2Q13576 1575 aa29.93■■■□□ 2.38
PAX3-208ENST00000409828 JPH4Q96JJ6 628 aa29.92■■■□□ 2.38
PAX3-208ENST00000409828 RIMBP3CA6NJZ7 1639 aa29.92■■■□□ 2.38
PAX3-208ENST00000409828 RIMBP3BA6NNM3 1639 aa29.92■■■□□ 2.38
PAX3-208ENST00000409828 RIMBP3Q9UFD9 1639 aa29.92■■■□□ 2.38
PAX3-208ENST00000409828 GOLGA3Q08378 1498 aa29.84■■■□□ 2.37
PAX3-208ENST00000409828 PRG4Q92954 1404 aaPredicted RBP29.81■■■□□ 2.36
PAX3-208ENST00000409828 UGGT2Q9NYU1 1516 aa29.81■■■□□ 2.36
PAX3-208ENST00000409828 ERCC6L2Q5T890 1561 aa29.75■■■□□ 2.35
PAX3-208ENST00000409828 ARAP1Q96P48 1450 aa29.73■■■□□ 2.35
PAX3-208ENST00000409828 CARMIL2Q6F5E8 1435 aa29.72■■■□□ 2.35
PAX3-208ENST00000409828 DISP1Q96F81 1524 aa29.68■■■□□ 2.34
PAX3-208ENST00000409828 UBTFP17480 764 aaKnown RBP29.65■■■□□ 2.34
PAX3-208ENST00000409828 KIAA0556O60303 1618 aa29.63■■■□□ 2.33
PAX3-208ENST00000409828 CYB5RLQ6IPT4 315 aa29.59■■■□□ 2.33
PAX3-208ENST00000409828 TNIKQ9UKE5 1360 aa29.59■■■□□ 2.33
PAX3-208ENST00000409828 SAMD9Q5K651 1589 aa29.58■■■□□ 2.33
PAX3-208ENST00000409828 EFCAB5A4FU69 1503 aa29.54■■■□□ 2.32
PAX3-208ENST00000409828 PTPRGP23470 1445 aa29.52■■■□□ 2.32
PAX3-208ENST00000409828 EHMT2Q96KQ7 1210 aa29.5■■■□□ 2.31
PAX3-208ENST00000409828 UHRF1BP1LA0JNW5 1464 aa29.36■■■□□ 2.29
PAX3-208ENST00000409828 ARHGAP35Q9NRY4 1499 aa29.36■■■□□ 2.29
PAX3-208ENST00000409828 UACAQ9BZF9 1416 aa29.36■■■□□ 2.29
PAX3-208ENST00000409828 ADCY10Q96PN6 1610 aa29.34■■■□□ 2.29
PAX3-208ENST00000409828 LOC105371045A0A1W2PR82 267 aa29.32■■■□□ 2.28
PAX3-208ENST00000409828 RANGAP1P46060 587 aaPredicted RBP29.32■■■□□ 2.28
PAX3-208ENST00000409828 P3H3Q8IVL6 736 aa29.32■■■□□ 2.28
PAX3-208ENST00000409828 ABCC2Q92887 1545 aa29.31■■■□□ 2.28
PAX3-208ENST00000409828 ABCA8O94911 1581 aa29.3■■■□□ 2.28
PAX3-208ENST00000409828 FHOD3Q2V2M9 1422 aa29.3■■■□□ 2.28
PAX3-208ENST00000409828 CLIP1P30622 1438 aa29.28■■■□□ 2.28
PAX3-208ENST00000409828 TTBK1Q5TCY1 1321 aaPredicted RBP29.26■■■□□ 2.27
PAX3-208ENST00000409828 PLB1Q6P1J6 1458 aa29.25■■■□□ 2.27
PAX3-208ENST00000409828 FMN1Q68DA7 1419 aa29.23■■■□□ 2.27
PAX3-208ENST00000409828 CEP162Q5TB80 1403 aa29.22■■■□□ 2.27
PAX3-208ENST00000409828 KDM5BQ9UGL1 1544 aa29.2■■■□□ 2.27
PAX3-208ENST00000409828 NPM1P06748 294 aaKnown RBP eCLIP29.2■■■□□ 2.26
PAX3-208ENST00000409828 RAPGEF6Q8TEU7 1601 aa29.2■■■□□ 2.26
PAX3-208ENST00000409828 MAPKBP1O60336 1514 aa29.16■■■□□ 2.26
PAX3-208ENST00000409828 ZCCHC11Q5TAX3 1644 aaKnown RBP29.1■■■□□ 2.25
PAX3-208ENST00000409828 NUP153P49790 1475 aaKnown RBP29.08■■■□□ 2.25
PAX3-208ENST00000409828 HECW1Q76N89 1606 aa29.04■■■□□ 2.24
PAX3-208ENST00000409828 ATP10BO94823 1461 aa29.04■■■□□ 2.24
PAX3-208ENST00000409828 CASKIN1Q8WXD9 1431 aa29.03■■■□□ 2.24
PAX3-208ENST00000409828 FYCO1Q9BQS8 1478 aa28.98■■■□□ 2.23
PAX3-208ENST00000409828 ASXL2Q76L83 1435 aa28.98■■■□□ 2.23
PAX3-208ENST00000409828 PCF11O94913 1555 aaKnown RBP28.96■■■□□ 2.23
PAX3-208ENST00000409828 ABCC10Q5T3U5 1492 aa28.95■■■□□ 2.22
PAX3-208ENST00000409828 EPRSP07814 1512 aaKnown RBP28.94■■■□□ 2.22
PAX3-208ENST00000409828 WDR7Q9Y4E6 1490 aa28.92■■■□□ 2.22
PAX3-208ENST00000409828 CCDC18Q5T9S5 1454 aa28.91■■■□□ 2.22
PAX3-208ENST00000409828 DIP2BQ9P265 1576 aa28.9■■■□□ 2.22
PAX3-208ENST00000409828 KIF13AQ9H1H9 1805 aa28.9■■■□□ 2.22
PAX3-208ENST00000409828 VPS8Q8N3P4 1428 aa28.89■■■□□ 2.22
PAX3-208ENST00000409828 LRRIQ1Q96JM4 1722 aa28.89■■■□□ 2.21
PAX3-208ENST00000409828 GLI2P10070 1586 aa28.87■■■□□ 2.21
PAX3-208ENST00000409828 CDK13Q14004 1512 aaKnown RBP28.84■■■□□ 2.21
PAX3-208ENST00000409828 TRHP20396 242 aaPredicted RBP28.84■■■□□ 2.21
PAX3-208ENST00000409828 ATP1B4Q9UN42 357 aaPredicted RBP28.84■■■□□ 2.21
PAX3-208ENST00000409828 ARID3CA6NKF2 412 aa28.83■■■□□ 2.21
PAX3-208ENST00000409828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.83■■■□□ 2.21
PAX3-208ENST00000409828 HNRNPUL2Q1KMD3 747 aaKnown RBP28.83■■■□□ 2.21
PAX3-208ENST00000409828 PLEKHD1A6NEE1 506 aa28.82■■■□□ 2.2
PAX3-208ENST00000409828 CDK11AQ9UQ88 783 aaPredicted RBP28.82■■■□□ 2.2
PAX3-208ENST00000409828 FAM69CQ0P6D2 419 aa28.78■■■□□ 2.2
PAX3-208ENST00000409828 CFAP43Q8NDM7 1665 aa28.72■■■□□ 2.19
PAX3-208ENST00000409828 TROQ12816 1431 aaPredicted RBP28.71■■■□□ 2.19
PAX3-208ENST00000409828 MAP3K4Q9Y6R4 1608 aa28.71■■■□□ 2.19
PAX3-208ENST00000409828 MAP3K1Q13233 1512 aa28.7■■■□□ 2.19
PAX3-208ENST00000409828 ABCA9Q8IUA7 1624 aa28.7■■■□□ 2.19
PAX3-208ENST00000409828 KCNH8Q96L42 1107 aa28.69■■■□□ 2.18
PAX3-208ENST00000409828 TIAM1Q13009 1591 aa28.64■■■□□ 2.18
PAX3-208ENST00000409828 MAGI3Q5TCQ9 1506 aa28.62■■■□□ 2.17
PAX3-208ENST00000409828 KIF14Q15058 1648 aa28.61■■■□□ 2.17
PAX3-208ENST00000409828 CD109Q6YHK3 1445 aa28.6■■■□□ 2.17
PAX3-208ENST00000409828 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.59■■■□□ 2.17
PAX3-208ENST00000409828 PPRC1Q5VV67 1664 aaKnown RBP28.59■■■□□ 2.17
PAX3-208ENST00000409828 TSPOAP1O95153 1857 aa28.59■■■□□ 2.17
PAX3-208ENST00000409828 EHBP1L1Q8N3D4 1523 aa28.57■■■□□ 2.16
PAX3-208ENST00000409828 MTUS2Q5JR59 1369 aa28.56■■■□□ 2.16
PAX3-208ENST00000409828 TEX14Q8IWB6 1497 aa28.56■■■□□ 2.16
PAX3-208ENST00000409828 TTC37Q6PGP7 1564 aa28.54■■■□□ 2.16
PAX3-208ENST00000409828 APLP2Q06481 763 aa28.52■■■□□ 2.16
PAX3-208ENST00000409828 ARAP3Q8WWN8 1544 aa28.51■■■□□ 2.15
PAX3-208ENST00000409828 LRRC9Q6ZRR7 1453 aa28.51■■■□□ 2.15
PAX3-208ENST00000409828 MYO5CQ9NQX4 1742 aa28.49■■■□□ 2.15
PAX3-208ENST00000409828 PHLDB1Q86UU1 1377 aa28.47■■■□□ 2.15
PAX3-208ENST00000409828 PLCH2O75038 1416 aa28.46■■■□□ 2.15
PAX3-208ENST00000409828 SUPT6HQ7KZ85 1726 aaKnown RBP28.45■■■□□ 2.14
PAX3-208ENST00000409828 NEO1Q92859 1461 aa28.44■■■□□ 2.14
PAX3-208ENST00000409828 CFAP74Q9C0B2 1584 aa28.42■■■□□ 2.14
PAX3-208ENST00000409828 CDC42BPAQ5VT25 1732 aa28.4■■■□□ 2.14
PAX3-208ENST00000409828 PREX2Q70Z35 1606 aa28.4■■■□□ 2.14
PAX3-208ENST00000409828 KANK4Q5T7N3 995 aaPredicted RBP28.38■■■□□ 2.13
PAX3-208ENST00000409828 CDC42BPBQ9Y5S2 1711 aa28.38■■■□□ 2.13
PAX3-208ENST00000409828 FANCAO15360 1455 aa28.37■■■□□ 2.13
PAX3-208ENST00000409828 NCOA2Q15596 1464 aa28.36■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms