RNA–Protein interactions for RNA: ENST00000409416.5

COL6A2-204, Transcript of collagen type VI alpha 2 chain, humanhuman

TSL 5 BASIC

Gene COL6A2, Length 3,430 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2-204ENST00000409416 CUX1P39880 1505 aa19.12■□□□□ 0.65
COL6A2-204ENST00000409416 CARMIL1Q5VZK9 1371 aa19.07■□□□□ 0.64
COL6A2-204ENST00000409416 FOXD1Q16676 465 aa19.06■□□□□ 0.64
COL6A2-204ENST00000409416 CLSPNQ9HAW4 1339 aa19.05■□□□□ 0.64
COL6A2-204ENST00000409416 RAB3GAP2Q9H2M9 1393 aa19.04■□□□□ 0.64
COL6A2-204ENST00000409416 ERICH3Q5RHP9 1530 aa19.03■□□□□ 0.64
COL6A2-204ENST00000409416 ARHGAP35Q9NRY4 1499 aa19.03■□□□□ 0.64
COL6A2-204ENST00000409416 RAD54L2Q9Y4B4 1467 aa19■□□□□ 0.63
COL6A2-204ENST00000409416 FHOD3Q2V2M9 1422 aa19■□□□□ 0.63
COL6A2-204ENST00000409416 BIVM-ERCC5R4GMW8 1640 aa19■□□□□ 0.63
COL6A2-204ENST00000409416 NESP48681 1621 aa18.99■□□□□ 0.63
COL6A2-204ENST00000409416 IRX6P78412 446 aaPredicted RBP18.99■□□□□ 0.63
COL6A2-204ENST00000409416 SUPT16HQ9Y5B9 1047 aaKnown RBP18.99■□□□□ 0.63
COL6A2-204ENST00000409416 NCAPD3P42695 1498 aa18.99■□□□□ 0.63
COL6A2-204ENST00000409416 IGF1RP08069 1367 aa18.97■□□□□ 0.63
COL6A2-204ENST00000409416 RRBP1Q9P2E9 1410 aaKnown RBP18.96■□□□□ 0.63
COL6A2-204ENST00000409416 MTUS2Q5JR59 1369 aa18.95■□□□□ 0.62
COL6A2-204ENST00000409416 CFTRP13569 1480 aa18.93■□□□□ 0.62
COL6A2-204ENST00000409416 BCL11AQ9H165 835 aa18.91■□□□□ 0.62
COL6A2-204ENST00000409416 CADPSQ9ULU8 1353 aa18.9■□□□□ 0.62
COL6A2-204ENST00000409416 PHLDB1Q86UU1 1377 aa18.9■□□□□ 0.62
COL6A2-204ENST00000409416 SETD5Q9C0A6 1442 aa18.88■□□□□ 0.61
COL6A2-204ENST00000409416 HMGXB3Q12766 1538 aa18.87■□□□□ 0.61
COL6A2-204ENST00000409416 SENP3Q9H4L4 574 aaPredicted RBP18.87■□□□□ 0.61
COL6A2-204ENST00000409416 FGD5Q6ZNL6 1462 aa18.87■□□□□ 0.61
COL6A2-204ENST00000409416 MYT1LQ9UL68 1186 aa18.87■□□□□ 0.61
COL6A2-204ENST00000409416 FKBP8Q14318 412 aa18.86■□□□□ 0.61
COL6A2-204ENST00000409416 NEFLP07196 543 aa18.84■□□□□ 0.61
COL6A2-204ENST00000409416 TONSLQ96HA7 1378 aa18.83■□□□□ 0.61
COL6A2-204ENST00000409416 ANP32CO43423 234 aa18.82■□□□□ 0.6
COL6A2-204ENST00000409416 SALL2Q9Y467 1007 aaPredicted RBP18.8■□□□□ 0.6
COL6A2-204ENST00000409416 FAM9BQ8IZU0 186 aa18.79■□□□□ 0.6
COL6A2-204ENST00000409416 LRRC9Q6ZRR7 1453 aa18.79■□□□□ 0.6
COL6A2-204ENST00000409416 KDM2AQ9Y2K7 1162 aa18.78■□□□□ 0.6
COL6A2-204ENST00000409416 TIAM1Q13009 1591 aa18.77■□□□□ 0.6
COL6A2-204ENST00000409416 FANCD2Q9BXW9 1451 aa18.77■□□□□ 0.59
COL6A2-204ENST00000409416 FHAD1B1AJZ9 1412 aa18.77■□□□□ 0.59
COL6A2-204ENST00000409416 HNRNPUQ00839 825 aaKnown RBP eCLIP18.75■□□□□ 0.59
COL6A2-204ENST00000409416 CHMP7Q8WUX9 453 aaPredicted RBP18.74■□□□□ 0.59
COL6A2-204ENST00000409416 WDR97A6NE52 1622 aa18.73■□□□□ 0.59
COL6A2-204ENST00000409416 MAPKBP1O60336 1514 aa18.72■□□□□ 0.59
COL6A2-204ENST00000409416 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.72■□□□□ 0.59
COL6A2-204ENST00000409416 TSHZ2Q9NRE2 1034 aa18.69■□□□□ 0.58
COL6A2-204ENST00000409416 PPP1R15AO75807 674 aaPredicted RBP18.68■□□□□ 0.58
COL6A2-204ENST00000409416 ZNF644Q9H582 1327 aaPredicted RBP18.67■□□□□ 0.58
COL6A2-204ENST00000409416 PCF11O94913 1555 aaKnown RBP18.67■□□□□ 0.58
COL6A2-204ENST00000409416 SLC4A1APQ9BWU0 796 aaKnown RBP18.65■□□□□ 0.58
COL6A2-204ENST00000409416 CC2D2AQ9P2K1 1620 aa18.62■□□□□ 0.57
COL6A2-204ENST00000409416 RGL3Q3MIN7 710 aa18.62■□□□□ 0.57
COL6A2-204ENST00000409416 AQRO60306 1485 aaKnown RBP eCLIP18.62■□□□□ 0.57
COL6A2-204ENST00000409416 PDS5BQ9NTI5 1447 aa18.6■□□□□ 0.57
COL6A2-204ENST00000409416 POLA1P09884 1462 aaPredicted RBP18.56■□□□□ 0.56
COL6A2-204ENST00000409416 FGD6Q6ZV73 1430 aa18.55■□□□□ 0.56
COL6A2-204ENST00000409416 CCDC18Q5T9S5 1454 aa18.54■□□□□ 0.56
COL6A2-204ENST00000409416 CFDP1Q9UEE9 299 aaPredicted RBP18.53■□□□□ 0.56
COL6A2-204ENST00000409416 PRKCSHP14314 528 aaPredicted RBP18.53■□□□□ 0.56
COL6A2-204ENST00000409416 TOPBP1Q92547 1522 aa18.52■□□□□ 0.56
COL6A2-204ENST00000409416 FMN1Q68DA7 1419 aa18.52■□□□□ 0.56
COL6A2-204ENST00000409416 CASKIN1Q8WXD9 1431 aa18.52■□□□□ 0.56
COL6A2-204ENST00000409416 HSPA5P11021 654 aaKnown RBP18.52■□□□□ 0.55
COL6A2-204ENST00000409416 MAP3K1Q13233 1512 aa18.52■□□□□ 0.55
COL6A2-204ENST00000409416 TIMELESSQ9UNS1 1208 aa18.51■□□□□ 0.55
COL6A2-204ENST00000409416 FYCO1Q9BQS8 1478 aa18.5■□□□□ 0.55
COL6A2-204ENST00000409416 MRS2Q9HD23 443 aa18.5■□□□□ 0.55
COL6A2-204ENST00000409416 L3MBTL2Q969R5 705 aa18.49■□□□□ 0.55
COL6A2-204ENST00000409416 PTPRKQ15262 1439 aa18.48■□□□□ 0.55
COL6A2-204ENST00000409416 CCER2I3L3R5 266 aa18.46■□□□□ 0.55
COL6A2-204ENST00000409416 MPHOSPH9Q99550 1183 aa18.45■□□□□ 0.54
COL6A2-204ENST00000409416 EIF4G2P78344 907 aaKnown RBP eCLIP18.45■□□□□ 0.54
COL6A2-204ENST00000409416 CDK11AQ9UQ88 783 aaPredicted RBP18.45■□□□□ 0.54
COL6A2-204ENST00000409416 ABCA10Q8WWZ4 1543 aa18.44■□□□□ 0.54
COL6A2-204ENST00000409416 ERCC6Q03468 1493 aa18.44■□□□□ 0.54
COL6A2-204ENST00000409416 DNMBPQ6XZF7 1577 aa18.44■□□□□ 0.54
COL6A2-204ENST00000409416 NCOA2Q15596 1464 aa18.43■□□□□ 0.54
COL6A2-204ENST00000409416 PRDM2Q13029 1718 aa18.43■□□□□ 0.54
COL6A2-204ENST00000409416 CFAP43Q8NDM7 1665 aa18.42■□□□□ 0.54
COL6A2-204ENST00000409416 GAPVD1Q14C86 1478 aa18.42■□□□□ 0.54
COL6A2-204ENST00000409416 CCDC184Q52MB2 194 aa18.41■□□□□ 0.54
COL6A2-204ENST00000409416 UACAQ9BZF9 1416 aa18.4■□□□□ 0.54
COL6A2-204ENST00000409416 ERICH6Q7L0X2 663 aa18.4■□□□□ 0.54
COL6A2-204ENST00000409416 HNRNPMP52272 730 aaKnown RBP eCLIP18.39■□□□□ 0.54
COL6A2-204ENST00000409416 ANP32EQ9BTT0 268 aa18.39■□□□□ 0.54
COL6A2-204ENST00000409416 EFCAB5A4FU69 1503 aa18.39■□□□□ 0.53
COL6A2-204ENST00000409416 MYOM3Q5VTT5 1437 aa18.39■□□□□ 0.53
COL6A2-204ENST00000409416 RBM19Q9Y4C8 960 aaKnown RBP18.38■□□□□ 0.53
COL6A2-204ENST00000409416 NAIPQ13075 1403 aa18.37■□□□□ 0.53
COL6A2-204ENST00000409416 HFM1A2PYH4 1435 aa18.37■□□□□ 0.53
COL6A2-204ENST00000409416 PKD2Q13563 968 aa18.36■□□□□ 0.53
COL6A2-204ENST00000409416 PLEKHD1A6NEE1 506 aa18.36■□□□□ 0.53
COL6A2-204ENST00000409416 TSPY4P0CV99 314 aa18.35■□□□□ 0.53
COL6A2-204ENST00000409416 TSPY10P0CW01 314 aa18.35■□□□□ 0.53
COL6A2-204ENST00000409416 URB2Q14146 1524 aaKnown RBP18.34■□□□□ 0.53
COL6A2-204ENST00000409416 WASHC2AQ641Q2 1341 aa18.34■□□□□ 0.53
COL6A2-204ENST00000409416 CHGAP10645 457 aaKnown RBP18.33■□□□□ 0.53
COL6A2-204ENST00000409416 DCAF11Q8TEB1 546 aa18.32■□□□□ 0.52
COL6A2-204ENST00000409416 SNAPC4Q5SXM2 1469 aa18.32■□□□□ 0.52
COL6A2-204ENST00000409416 B4GALNT3Q6L9W6 998 aa18.31■□□□□ 0.52
COL6A2-204ENST00000409416 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.31■□□□□ 0.52
COL6A2-204ENST00000409416 PTPN23Q9H3S7 1636 aa18.3■□□□□ 0.52
COL6A2-204ENST00000409416 JPH4Q96JJ6 628 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms