RNA–Protein interactions for RNA: ENST00000409416.5

COL6A2-204, Transcript of collagen type VI alpha 2 chain, humanhuman

TSL 5 BASIC

Gene COL6A2, Length 3,430 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2-204ENST00000409416 NISCHQ9Y2I1 1504 aa26.3■■□□□ 1.8
COL6A2-204ENST00000409416 DCAF8L2P0C7V8 631 aa24.2■■□□□ 1.47
COL6A2-204ENST00000409416 SHROOM4Q9ULL8 1493 aa24.06■■□□□ 1.44
COL6A2-204ENST00000409416 SUPT5HO00267 1087 aaKnown RBP23.72■■□□□ 1.39
COL6A2-204ENST00000409416 EHMT2Q96KQ7 1210 aa22.82■■□□□ 1.24
COL6A2-204ENST00000409416 FAM9AQ8IZU1 332 aaPredicted RBP22.27■■□□□ 1.16
COL6A2-204ENST00000409416 ZCCHC6Q5VYS8 1495 aaKnown RBP22.18■■□□□ 1.14
COL6A2-204ENST00000409416 PCGF6Q9BYE7 350 aa22.12■■□□□ 1.13
COL6A2-204ENST00000409416 CHIC1Q5VXU3 224 aa22.1■■□□□ 1.13
COL6A2-204ENST00000409416 LOC105371045A0A1W2PR82 267 aa22.07■■□□□ 1.12
COL6A2-204ENST00000409416 MYO15BQ96JP2 1530 aa21.94■■□□□ 1.1
COL6A2-204ENST00000409416 CCDC180Q9P1Z9 1646 aa21.92■■□□□ 1.1
COL6A2-204ENST00000409416 TTBK1Q5TCY1 1321 aaPredicted RBP21.9■■□□□ 1.1
COL6A2-204ENST00000409416 PPARGC1BQ86YN6 1023 aaKnown RBP21.84■■□□□ 1.09
COL6A2-204ENST00000409416 HRCP23327 699 aa21.73■■□□□ 1.07
COL6A2-204ENST00000409416 ABCC9O60706 1549 aa21.61■■□□□ 1.05
COL6A2-204ENST00000409416 TRIM41Q8WV44 630 aa21.58■■□□□ 1.05
COL6A2-204ENST00000409416 RANGAP1P46060 587 aaPredicted RBP21.46■■□□□ 1.03
COL6A2-204ENST00000409416 PABPN1Q86U42 306 aaKnown RBP eCLIP21.29■■□□□ 1
COL6A2-204ENST00000409416 SCRIBQ14160 1630 aa21.22■□□□□ 0.99
COL6A2-204ENST00000409416 DCAF1Q9Y4B6 1507 aa21.2■□□□□ 0.98
COL6A2-204ENST00000409416 TRIM26Q12899 539 aaPredicted RBP21.18■□□□□ 0.98
COL6A2-204ENST00000409416 RSF1Q96T23 1441 aaPredicted RBP21.02■□□□□ 0.96
COL6A2-204ENST00000409416 UBTFP17480 764 aaKnown RBP20.93■□□□□ 0.94
COL6A2-204ENST00000409416 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.85■□□□□ 0.93
COL6A2-204ENST00000409416 RB1CC1Q8TDY2 1594 aa20.85■□□□□ 0.93
COL6A2-204ENST00000409416 CCER1Q8TC90 406 aaPredicted RBP20.78■□□□□ 0.92
COL6A2-204ENST00000409416 CECR2Q9BXF3 1484 aa20.77■□□□□ 0.92
COL6A2-204ENST00000409416 ZEB1P37275 1124 aaPredicted RBP20.71■□□□□ 0.91
COL6A2-204ENST00000409416 PELP1Q8IZL8 1130 aaKnown RBP20.63■□□□□ 0.89
COL6A2-204ENST00000409416 MROH2BQ7Z745 1585 aa20.6■□□□□ 0.89
COL6A2-204ENST00000409416 HNRNPUL2Q1KMD3 747 aaKnown RBP20.59■□□□□ 0.89
COL6A2-204ENST00000409416 WIZO95785 1651 aa20.49■□□□□ 0.87
COL6A2-204ENST00000409416 ATP1B4Q9UN42 357 aaPredicted RBP20.49■□□□□ 0.87
COL6A2-204ENST00000409416 YTHDC1Q96MU7 727 aaKnown RBP20.46■□□□□ 0.87
COL6A2-204ENST00000409416 ITGAEP38570 1179 aa20.46■□□□□ 0.87
COL6A2-204ENST00000409416 APLP2Q06481 763 aa20.44■□□□□ 0.86
COL6A2-204ENST00000409416 NACADO15069 1562 aa20.43■□□□□ 0.86
COL6A2-204ENST00000409416 ABCC8Q09428 1581 aa20.27■□□□□ 0.84
COL6A2-204ENST00000409416 SCAF1Q9H7N4 1312 aaKnown RBP20.24■□□□□ 0.83
COL6A2-204ENST00000409416 CSRNP3Q8WYN3 585 aa20.2■□□□□ 0.82
COL6A2-204ENST00000409416 CCDC88BA6NC98 1476 aa20.2■□□□□ 0.82
COL6A2-204ENST00000409416 BAZ1AQ9NRL2 1556 aaPredicted RBP20.18■□□□□ 0.82
COL6A2-204ENST00000409416 SOGA1O94964 1423 aa20.16■□□□□ 0.82
COL6A2-204ENST00000409416 DIEXFQ68CQ4 756 aaKnown RBP20.12■□□□□ 0.81
COL6A2-204ENST00000409416 P3H3Q8IVL6 736 aa20.11■□□□□ 0.81
COL6A2-204ENST00000409416 CEP162Q5TB80 1403 aa20.1■□□□□ 0.81
COL6A2-204ENST00000409416 RUSC2Q8N2Y8 1516 aa20.03■□□□□ 0.8
COL6A2-204ENST00000409416 NEUROD1Q13562 356 aa20.01■□□□□ 0.79
COL6A2-204ENST00000409416 TOP2AP11388 1531 aaKnown RBP20■□□□□ 0.79
COL6A2-204ENST00000409416 MYT1Q01538 1121 aa19.98■□□□□ 0.79
COL6A2-204ENST00000409416 SMARCA4P51532 1647 aa19.96■□□□□ 0.79
COL6A2-204ENST00000409416 ACIN1Q9UKV3 1341 aaKnown RBP19.95■□□□□ 0.78
COL6A2-204ENST00000409416 CENPBP07199 599 aaPredicted RBP19.95■□□□□ 0.78
COL6A2-204ENST00000409416 ARID3CA6NKF2 412 aa19.94■□□□□ 0.78
COL6A2-204ENST00000409416 SMARCA2P51531 1590 aa19.93■□□□□ 0.78
COL6A2-204ENST00000409416 GTF3C3Q9Y5Q9 886 aa19.92■□□□□ 0.78
COL6A2-204ENST00000409416 TNIKQ9UKE5 1360 aa19.91■□□□□ 0.78
COL6A2-204ENST00000409416 EIF4G1Q04637 1599 aaKnown RBP19.87■□□□□ 0.77
COL6A2-204ENST00000409416 WRNQ14191 1432 aaPredicted RBP eCLIP19.85■□□□□ 0.77
COL6A2-204ENST00000409416 ZNF316A6NFI3 1004 aaPredicted RBP19.82■□□□□ 0.76
COL6A2-204ENST00000409416 GOLGA3Q08378 1498 aa19.81■□□□□ 0.76
COL6A2-204ENST00000409416 CNGB1Q14028 1251 aaPredicted RBP19.8■□□□□ 0.76
COL6A2-204ENST00000409416 FAM50AQ14320 339 aaKnown RBP19.77■□□□□ 0.76
COL6A2-204ENST00000409416 EEA1Q15075 1411 aa19.75■□□□□ 0.75
COL6A2-204ENST00000409416 CLIP1P30622 1438 aa19.74■□□□□ 0.75
COL6A2-204ENST00000409416 UNC13AQ9UPW8 1703 aa19.71■□□□□ 0.75
COL6A2-204ENST00000409416 HIRIP3Q9BW71 556 aaPredicted RBP19.69■□□□□ 0.74
COL6A2-204ENST00000409416 MIER1Q8N108 512 aa19.66■□□□□ 0.74
COL6A2-204ENST00000409416 CEP164Q9UPV0 1460 aa19.64■□□□□ 0.73
COL6A2-204ENST00000409416 BAZ1BQ9UIG0 1483 aaKnown RBP19.63■□□□□ 0.73
COL6A2-204ENST00000409416 KANK4Q5T7N3 995 aaPredicted RBP19.6■□□□□ 0.73
COL6A2-204ENST00000409416 SYNJ1O43426 1573 aa19.59■□□□□ 0.73
COL6A2-204ENST00000409416 RAPGEF2Q9Y4G8 1499 aa19.58■□□□□ 0.73
COL6A2-204ENST00000409416 BICRAQ9NZM4 1560 aa19.54■□□□□ 0.72
COL6A2-204ENST00000409416 ATAD2BQ9ULI0 1458 aa19.53■□□□□ 0.72
COL6A2-204ENST00000409416 VPS8Q8N3P4 1428 aa19.52■□□□□ 0.72
COL6A2-204ENST00000409416 BCANQ96GW7 911 aa19.44■□□□□ 0.7
COL6A2-204ENST00000409416 FBLN2P98095 1184 aa19.42■□□□□ 0.7
COL6A2-204ENST00000409416 POLR3GLQ9BT43 218 aa19.41■□□□□ 0.7
COL6A2-204ENST00000409416 CHIC2Q9UKJ5 165 aa19.38■□□□□ 0.69
COL6A2-204ENST00000409416 DNAJC5BQ9UF47 199 aa19.37■□□□□ 0.69
COL6A2-204ENST00000409416 KIF21BO75037 1637 aa19.37■□□□□ 0.69
COL6A2-204ENST00000409416 SIN3AQ96ST3 1273 aa19.35■□□□□ 0.69
COL6A2-204ENST00000409416 SENP3-EIF4A1A0A087X0R7 540 aa19.34■□□□□ 0.69
COL6A2-204ENST00000409416 TRIM52Q96A61 297 aa19.29■□□□□ 0.68
COL6A2-204ENST00000409416 DDX10Q13206 875 aaKnown RBP19.28■□□□□ 0.68
COL6A2-204ENST00000409416 PEG3Q9GZU2 1588 aa19.27■□□□□ 0.68
COL6A2-204ENST00000409416 DHX57Q6P158 1386 aaKnown RBP19.23■□□□□ 0.67
COL6A2-204ENST00000409416 KIF27Q86VH2 1401 aa19.23■□□□□ 0.67
COL6A2-204ENST00000409416 CUX2O14529 1486 aa19.22■□□□□ 0.67
COL6A2-204ENST00000409416 ZNF326Q5BKZ1 582 aaKnown RBP19.21■□□□□ 0.66
COL6A2-204ENST00000409416 ARAP1Q96P48 1450 aa19.19■□□□□ 0.66
COL6A2-204ENST00000409416 TOP2BQ02880 1626 aa19.19■□□□□ 0.66
COL6A2-204ENST00000409416 KCNH8Q96L42 1107 aa19.19■□□□□ 0.66
COL6A2-204ENST00000409416 RRP7BPQ9NSQ0 103 aa19.17■□□□□ 0.66
COL6A2-204ENST00000409416 ZNF777Q9ULD5 760 aaPredicted RBP19.16■□□□□ 0.66
COL6A2-204ENST00000409416 CCNB3Q8WWL7 1395 aa19.14■□□□□ 0.65
COL6A2-204ENST00000409416 TDRD9Q8NDG6 1382 aaKnown RBP19.13■□□□□ 0.65
COL6A2-204ENST00000409416 PRXQ9BXM0 1461 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 181.2 ms