RNA–Protein interactions for RNA: ENST00000401533.6

GAREM2-201, Transcript of GRB2 associated regulator of MAPK1 subtype 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GAREM2, Length 4,161 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAREM2-201ENST00000401533 CUX1P39880 1505 aa26.03■■□□□ 1.76
GAREM2-201ENST00000401533 CUX2O14529 1486 aa25.99■■□□□ 1.75
GAREM2-201ENST00000401533 CARMIL1Q5VZK9 1371 aa25.93■■□□□ 1.74
GAREM2-201ENST00000401533 FKBP8Q14318 412 aa25.92■■□□□ 1.74
GAREM2-201ENST00000401533 BIVM-ERCC5R4GMW8 1640 aa25.9■■□□□ 1.74
GAREM2-201ENST00000401533 PRXQ9BXM0 1461 aa25.9■■□□□ 1.74
GAREM2-201ENST00000401533 CCNB3Q8WWL7 1395 aa25.88■■□□□ 1.73
GAREM2-201ENST00000401533 CC2D2AQ9P2K1 1620 aa25.86■■□□□ 1.73
GAREM2-201ENST00000401533 HNRNPUQ00839 825 aaKnown RBP eCLIP25.82■■□□□ 1.72
GAREM2-201ENST00000401533 CDK11AQ9UQ88 783 aaPredicted RBP25.82■■□□□ 1.72
GAREM2-201ENST00000401533 ERICH3Q5RHP9 1530 aa25.8■■□□□ 1.72
GAREM2-201ENST00000401533 FAM9BQ8IZU0 186 aa25.78■■□□□ 1.72
GAREM2-201ENST00000401533 IGF1RP08069 1367 aa25.77■■□□□ 1.72
GAREM2-201ENST00000401533 SENP3-EIF4A1A0A087X0R7 540 aa25.77■■□□□ 1.72
GAREM2-201ENST00000401533 FANCD2Q9BXW9 1451 aa25.76■■□□□ 1.72
GAREM2-201ENST00000401533 SLC4A1APQ9BWU0 796 aaKnown RBP25.76■■□□□ 1.71
GAREM2-201ENST00000401533 FGD5Q6ZNL6 1462 aa25.76■■□□□ 1.71
GAREM2-201ENST00000401533 TDRD9Q8NDG6 1382 aaKnown RBP25.73■■□□□ 1.71
GAREM2-201ENST00000401533 CHMP7Q8WUX9 453 aaPredicted RBP25.73■■□□□ 1.71
GAREM2-201ENST00000401533 IRX6P78412 446 aaPredicted RBP25.72■■□□□ 1.71
GAREM2-201ENST00000401533 ARAP1Q96P48 1450 aa25.68■■□□□ 1.7
GAREM2-201ENST00000401533 KDM2AQ9Y2K7 1162 aa25.67■■□□□ 1.7
GAREM2-201ENST00000401533 NESP48681 1621 aa25.65■■□□□ 1.7
GAREM2-201ENST00000401533 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.63■■□□□ 1.69
GAREM2-201ENST00000401533 SALL2Q9Y467 1007 aaPredicted RBP25.63■■□□□ 1.69
GAREM2-201ENST00000401533 RAB3GAP2Q9H2M9 1393 aa25.62■■□□□ 1.69
GAREM2-201ENST00000401533 RAD54L2Q9Y4B4 1467 aa25.6■■□□□ 1.69
GAREM2-201ENST00000401533 CLSPNQ9HAW4 1339 aa25.58■■□□□ 1.69
GAREM2-201ENST00000401533 ARHGAP35Q9NRY4 1499 aa25.57■■□□□ 1.68
GAREM2-201ENST00000401533 FOXD1Q16676 465 aa25.56■■□□□ 1.68
GAREM2-201ENST00000401533 MYT1Q01538 1121 aa25.56■■□□□ 1.68
GAREM2-201ENST00000401533 FHOD3Q2V2M9 1422 aa25.54■■□□□ 1.68
GAREM2-201ENST00000401533 DNAJC5BQ9UF47 199 aa25.53■■□□□ 1.68
GAREM2-201ENST00000401533 MRS2Q9HD23 443 aa25.53■■□□□ 1.68
GAREM2-201ENST00000401533 FHAD1B1AJZ9 1412 aa25.53■■□□□ 1.68
GAREM2-201ENST00000401533 EIF4G2P78344 907 aaKnown RBP eCLIP25.52■■□□□ 1.68
GAREM2-201ENST00000401533 DHX57Q6P158 1386 aaKnown RBP25.5■■□□□ 1.67
GAREM2-201ENST00000401533 KCNH8Q96L42 1107 aa25.5■■□□□ 1.67
GAREM2-201ENST00000401533 SETD5Q9C0A6 1442 aa25.5■■□□□ 1.67
GAREM2-201ENST00000401533 TSPY4P0CV99 314 aa25.48■■□□□ 1.67
GAREM2-201ENST00000401533 TSPY10P0CW01 314 aa25.48■■□□□ 1.67
GAREM2-201ENST00000401533 TOPBP1Q92547 1522 aa25.46■■□□□ 1.67
GAREM2-201ENST00000401533 CFDP1Q9UEE9 299 aaPredicted RBP25.46■■□□□ 1.67
GAREM2-201ENST00000401533 POLA1P09884 1462 aaPredicted RBP25.45■■□□□ 1.66
GAREM2-201ENST00000401533 PDS5BQ9NTI5 1447 aa25.42■■□□□ 1.66
GAREM2-201ENST00000401533 RGL3Q3MIN7 710 aa25.42■■□□□ 1.66
GAREM2-201ENST00000401533 PRDM2Q13029 1718 aa25.41■■□□□ 1.66
GAREM2-201ENST00000401533 DNMBPQ6XZF7 1577 aa25.41■■□□□ 1.66
GAREM2-201ENST00000401533 SUPT16HQ9Y5B9 1047 aaKnown RBP25.39■■□□□ 1.66
GAREM2-201ENST00000401533 PLEKHD1A6NEE1 506 aa25.37■■□□□ 1.65
GAREM2-201ENST00000401533 TMC1Q8TDI8 760 aa25.34■■□□□ 1.65
GAREM2-201ENST00000401533 ABCA10Q8WWZ4 1543 aa25.33■■□□□ 1.65
GAREM2-201ENST00000401533 CHGAP10645 457 aaKnown RBP25.3■■□□□ 1.64
GAREM2-201ENST00000401533 PPP1R15AO75807 674 aaPredicted RBP25.3■■□□□ 1.64
GAREM2-201ENST00000401533 SENP3Q9H4L4 574 aaPredicted RBP25.3■■□□□ 1.64
GAREM2-201ENST00000401533 RRBP1Q9P2E9 1410 aaKnown RBP25.29■■□□□ 1.64
GAREM2-201ENST00000401533 DAXXQ9UER7 740 aaPredicted RBP25.26■■□□□ 1.63
GAREM2-201ENST00000401533 URB2Q14146 1524 aaKnown RBP25.26■■□□□ 1.63
GAREM2-201ENST00000401533 LAMC3Q9Y6N6 1575 aa25.25■■□□□ 1.63
GAREM2-201ENST00000401533 HSPA5P11021 654 aaKnown RBP25.23■■□□□ 1.63
GAREM2-201ENST00000401533 GAPVD1Q14C86 1478 aa25.22■■□□□ 1.63
GAREM2-201ENST00000401533 PHLDB1Q86UU1 1377 aa25.19■■□□□ 1.62
GAREM2-201ENST00000401533 LRRC9Q6ZRR7 1453 aa25.19■■□□□ 1.62
GAREM2-201ENST00000401533 FMN1Q68DA7 1419 aa25.18■■□□□ 1.62
GAREM2-201ENST00000401533 NPM2Q86SE8 214 aaKnown RBP25.17■■□□□ 1.62
GAREM2-201ENST00000401533 TIAM1Q13009 1591 aa25.17■■□□□ 1.62
GAREM2-201ENST00000401533 MPHOSPH9Q99550 1183 aa25.17■■□□□ 1.62
GAREM2-201ENST00000401533 ERCC6Q03468 1493 aa25.15■■□□□ 1.62
GAREM2-201ENST00000401533 CARD11Q9BXL7 1154 aa25.15■■□□□ 1.62
GAREM2-201ENST00000401533 TIMELESSQ9UNS1 1208 aa25.13■■□□□ 1.61
GAREM2-201ENST00000401533 L3MBTL2Q969R5 705 aa25.12■■□□□ 1.61
GAREM2-201ENST00000401533 CCDC136Q96JN2 1154 aa25.1■■□□□ 1.61
GAREM2-201ENST00000401533 PKD2Q13563 968 aa25.08■■□□□ 1.61
GAREM2-201ENST00000401533 BCL11AQ9H165 835 aa25.07■■□□□ 1.6
GAREM2-201ENST00000401533 PCF11O94913 1555 aaKnown RBP25.07■■□□□ 1.6
GAREM2-201ENST00000401533 CASKIN1Q8WXD9 1431 aa25.06■■□□□ 1.6
GAREM2-201ENST00000401533 DCAF11Q8TEB1 546 aa25.06■■□□□ 1.6
GAREM2-201ENST00000401533 CUL7Q14999 1698 aa25.05■■□□□ 1.6
GAREM2-201ENST00000401533 MAP3K1Q13233 1512 aa25.05■■□□□ 1.6
GAREM2-201ENST00000401533 EFCAB5A4FU69 1503 aa25.04■■□□□ 1.6
GAREM2-201ENST00000401533 AQRO60306 1485 aaKnown RBP eCLIP25.04■■□□□ 1.6
GAREM2-201ENST00000401533 RTL5Q5HYW3 569 aaPredicted RBP25.04■■□□□ 1.6
GAREM2-201ENST00000401533 FYCO1Q9BQS8 1478 aa25.02■■□□□ 1.6
GAREM2-201ENST00000401533 ZNF644Q9H582 1327 aaPredicted RBP24.99■■□□□ 1.59
GAREM2-201ENST00000401533 B4GALNT3Q6L9W6 998 aa24.97■■□□□ 1.59
GAREM2-201ENST00000401533 CANXP27824 592 aaKnown RBP24.97■■□□□ 1.59
GAREM2-201ENST00000401533 CCER2I3L3R5 266 aa24.96■■□□□ 1.59
GAREM2-201ENST00000401533 NPM1P06748 294 aaKnown RBP eCLIP24.92■■□□□ 1.58
GAREM2-201ENST00000401533 HNRNPMP52272 730 aaKnown RBP eCLIP24.92■■□□□ 1.58
GAREM2-201ENST00000401533 KIF21AQ7Z4S6 1674 aa24.9■■□□□ 1.58
GAREM2-201ENST00000401533 MRC2Q9UBG0 1479 aa24.9■■□□□ 1.58
GAREM2-201ENST00000401533 JPH4Q96JJ6 628 aa24.9■■□□□ 1.58
GAREM2-201ENST00000401533 ANP32AP39687 249 aaKnown RBP24.9■■□□□ 1.58
GAREM2-201ENST00000401533 CC2D1BQ5T0F9 858 aaKnown RBP24.9■■□□□ 1.58
GAREM2-201ENST00000401533 FGD6Q6ZV73 1430 aa24.87■■□□□ 1.57
GAREM2-201ENST00000401533 NUP155O75694 1391 aa24.86■■□□□ 1.57
GAREM2-201ENST00000401533 CCDC18Q5T9S5 1454 aa24.86■■□□□ 1.57
GAREM2-201ENST00000401533 ABCA5Q8WWZ7 1642 aa24.85■■□□□ 1.57
GAREM2-201ENST00000401533 NBR1Q14596 966 aa24.85■■□□□ 1.57
GAREM2-201ENST00000401533 WDR43Q15061 677 aaKnown RBP eCLIP24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 183.7 ms