RNA–Protein interactions for RNA: ENST00000401533.6

GAREM2-201, Transcript of GRB2 associated regulator of MAPK1 subtype 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GAREM2, Length 4,161 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAREM2-201ENST00000401533 NISCHQ9Y2I1 1504 aa35.95■■■■□ 3.35
GAREM2-201ENST00000401533 DCAF8L2P0C7V8 631 aa33.01■■■□□ 2.87
GAREM2-201ENST00000401533 SHROOM4Q9ULL8 1493 aa32.24■■■□□ 2.75
GAREM2-201ENST00000401533 SUPT5HO00267 1087 aaKnown RBP32.18■■■□□ 2.74
GAREM2-201ENST00000401533 EHMT2Q96KQ7 1210 aa30.69■■■□□ 2.5
GAREM2-201ENST00000401533 CCDC180Q9P1Z9 1646 aa30.44■■■□□ 2.46
GAREM2-201ENST00000401533 ZCCHC6Q5VYS8 1495 aaKnown RBP30.26■■■□□ 2.43
GAREM2-201ENST00000401533 FAM9AQ8IZU1 332 aaPredicted RBP30.17■■■□□ 2.42
GAREM2-201ENST00000401533 PCGF6Q9BYE7 350 aa30.07■■■□□ 2.4
GAREM2-201ENST00000401533 CHIC1Q5VXU3 224 aa29.67■■■□□ 2.34
GAREM2-201ENST00000401533 TRIM41Q8WV44 630 aa29.58■■■□□ 2.33
GAREM2-201ENST00000401533 TTBK1Q5TCY1 1321 aaPredicted RBP29.56■■■□□ 2.32
GAREM2-201ENST00000401533 LOC105371045A0A1W2PR82 267 aa29.55■■■□□ 2.32
GAREM2-201ENST00000401533 DCAF1Q9Y4B6 1507 aa29.3■■■□□ 2.28
GAREM2-201ENST00000401533 PPARGC1BQ86YN6 1023 aaKnown RBP29.26■■■□□ 2.27
GAREM2-201ENST00000401533 RANGAP1P46060 587 aaPredicted RBP29.09■■■□□ 2.25
GAREM2-201ENST00000401533 ABCC9O60706 1549 aa29.06■■■□□ 2.24
GAREM2-201ENST00000401533 HRCP23327 699 aa28.92■■■□□ 2.22
GAREM2-201ENST00000401533 SCRIBQ14160 1630 aa28.84■■■□□ 2.21
GAREM2-201ENST00000401533 UBTFP17480 764 aaKnown RBP28.78■■■□□ 2.2
GAREM2-201ENST00000401533 TRIM26Q12899 539 aaPredicted RBP28.75■■■□□ 2.19
GAREM2-201ENST00000401533 APLP2Q06481 763 aa28.72■■■□□ 2.19
GAREM2-201ENST00000401533 CCER1Q8TC90 406 aaPredicted RBP28.69■■■□□ 2.18
GAREM2-201ENST00000401533 MYO15BQ96JP2 1530 aa28.55■■■□□ 2.16
GAREM2-201ENST00000401533 PABPN1Q86U42 306 aaKnown RBP eCLIP28.53■■■□□ 2.16
GAREM2-201ENST00000401533 NACADO15069 1562 aa28.45■■■□□ 2.15
GAREM2-201ENST00000401533 ZEB1P37275 1124 aaPredicted RBP28.43■■■□□ 2.14
GAREM2-201ENST00000401533 RSF1Q96T23 1441 aaPredicted RBP28.43■■■□□ 2.14
GAREM2-201ENST00000401533 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.21■■■□□ 2.11
GAREM2-201ENST00000401533 ATP1B4Q9UN42 357 aaPredicted RBP28.2■■■□□ 2.1
GAREM2-201ENST00000401533 CECR2Q9BXF3 1484 aa28.16■■■□□ 2.1
GAREM2-201ENST00000401533 RB1CC1Q8TDY2 1594 aa28.13■■■□□ 2.09
GAREM2-201ENST00000401533 HNRNPUL2Q1KMD3 747 aaKnown RBP28.06■■■□□ 2.08
GAREM2-201ENST00000401533 YTHDC1Q96MU7 727 aaKnown RBP27.98■■■□□ 2.07
GAREM2-201ENST00000401533 MROH2BQ7Z745 1585 aa27.96■■■□□ 2.07
GAREM2-201ENST00000401533 ITGAEP38570 1179 aa27.89■■■□□ 2.06
GAREM2-201ENST00000401533 CENPBP07199 599 aaPredicted RBP27.76■■■□□ 2.03
GAREM2-201ENST00000401533 WIZO95785 1651 aa27.71■■■□□ 2.03
GAREM2-201ENST00000401533 BAZ1AQ9NRL2 1556 aaPredicted RBP27.68■■■□□ 2.02
GAREM2-201ENST00000401533 CSRNP3Q8WYN3 585 aa27.6■■■□□ 2.01
GAREM2-201ENST00000401533 DIEXFQ68CQ4 756 aaKnown RBP27.48■■□□□ 1.99
GAREM2-201ENST00000401533 SMARCA4P51532 1647 aa27.37■■□□□ 1.97
GAREM2-201ENST00000401533 CCDC88BA6NC98 1476 aa27.3■■□□□ 1.96
GAREM2-201ENST00000401533 TOP2AP11388 1531 aaKnown RBP27.3■■□□□ 1.96
GAREM2-201ENST00000401533 UNC13AQ9UPW8 1703 aa27.23■■□□□ 1.95
GAREM2-201ENST00000401533 P3H3Q8IVL6 736 aa27.18■■□□□ 1.94
GAREM2-201ENST00000401533 PELP1Q8IZL8 1130 aaKnown RBP27.18■■□□□ 1.94
GAREM2-201ENST00000401533 FAM50AQ14320 339 aaKnown RBP27.15■■□□□ 1.94
GAREM2-201ENST00000401533 ABCC8Q09428 1581 aa27.13■■□□□ 1.93
GAREM2-201ENST00000401533 BICRAQ9NZM4 1560 aa27.12■■□□□ 1.93
GAREM2-201ENST00000401533 SMARCA2P51531 1590 aa27.1■■□□□ 1.93
GAREM2-201ENST00000401533 NEUROD1Q13562 356 aa27.01■■□□□ 1.91
GAREM2-201ENST00000401533 GTF3C3Q9Y5Q9 886 aa26.98■■□□□ 1.91
GAREM2-201ENST00000401533 ZNF316A6NFI3 1004 aaPredicted RBP26.97■■□□□ 1.91
GAREM2-201ENST00000401533 CNGB1Q14028 1251 aaPredicted RBP26.94■■□□□ 1.9
GAREM2-201ENST00000401533 BAZ1BQ9UIG0 1483 aaKnown RBP26.94■■□□□ 1.9
GAREM2-201ENST00000401533 SOGA1O94964 1423 aa26.92■■□□□ 1.9
GAREM2-201ENST00000401533 ATAD2BQ9ULI0 1458 aa26.9■■□□□ 1.9
GAREM2-201ENST00000401533 WRNQ14191 1432 aaPredicted RBP eCLIP26.87■■□□□ 1.89
GAREM2-201ENST00000401533 CEP162Q5TB80 1403 aa26.87■■□□□ 1.89
GAREM2-201ENST00000401533 EIF4G1Q04637 1599 aaKnown RBP26.87■■□□□ 1.89
GAREM2-201ENST00000401533 ARID3CA6NKF2 412 aa26.86■■□□□ 1.89
GAREM2-201ENST00000401533 POLR3GLQ9BT43 218 aa26.79■■□□□ 1.88
GAREM2-201ENST00000401533 ACIN1Q9UKV3 1341 aaKnown RBP26.76■■□□□ 1.87
GAREM2-201ENST00000401533 CLIP1P30622 1438 aa26.73■■□□□ 1.87
GAREM2-201ENST00000401533 EEA1Q15075 1411 aa26.72■■□□□ 1.87
GAREM2-201ENST00000401533 RUSC2Q8N2Y8 1516 aa26.71■■□□□ 1.87
GAREM2-201ENST00000401533 NEFLP07196 543 aa26.7■■□□□ 1.86
GAREM2-201ENST00000401533 PEG3Q9GZU2 1588 aa26.67■■□□□ 1.86
GAREM2-201ENST00000401533 TNIKQ9UKE5 1360 aa26.64■■□□□ 1.86
GAREM2-201ENST00000401533 TRIM52Q96A61 297 aa26.64■■□□□ 1.86
GAREM2-201ENST00000401533 SCAF1Q9H7N4 1312 aaKnown RBP26.62■■□□□ 1.85
GAREM2-201ENST00000401533 GOLGA3Q08378 1498 aa26.56■■□□□ 1.84
GAREM2-201ENST00000401533 FBLN2P98095 1184 aa26.55■■□□□ 1.84
GAREM2-201ENST00000401533 MIER1Q8N108 512 aa26.52■■□□□ 1.84
GAREM2-201ENST00000401533 BCANQ96GW7 911 aa26.52■■□□□ 1.84
GAREM2-201ENST00000401533 SYNJ1O43426 1573 aa26.46■■□□□ 1.83
GAREM2-201ENST00000401533 CEP164Q9UPV0 1460 aa26.43■■□□□ 1.82
GAREM2-201ENST00000401533 HIRIP3Q9BW71 556 aaPredicted RBP26.41■■□□□ 1.82
GAREM2-201ENST00000401533 NCAPD3P42695 1498 aa26.39■■□□□ 1.82
GAREM2-201ENST00000401533 ZNF326Q5BKZ1 582 aaKnown RBP26.36■■□□□ 1.81
GAREM2-201ENST00000401533 DDX10Q13206 875 aaKnown RBP26.33■■□□□ 1.81
GAREM2-201ENST00000401533 CHIC2Q9UKJ5 165 aa26.32■■□□□ 1.8
GAREM2-201ENST00000401533 MYT1LQ9UL68 1186 aa26.3■■□□□ 1.8
GAREM2-201ENST00000401533 ERICH6Q7L0X2 663 aa26.26■■□□□ 1.79
GAREM2-201ENST00000401533 KANK4Q5T7N3 995 aaPredicted RBP26.25■■□□□ 1.79
GAREM2-201ENST00000401533 RAPGEF2Q9Y4G8 1499 aa26.24■■□□□ 1.79
GAREM2-201ENST00000401533 HMGXB3Q12766 1538 aa26.23■■□□□ 1.79
GAREM2-201ENST00000401533 ANP32CO43423 234 aa26.22■■□□□ 1.79
GAREM2-201ENST00000401533 ZNF777Q9ULD5 760 aaPredicted RBP26.22■■□□□ 1.79
GAREM2-201ENST00000401533 KIF27Q86VH2 1401 aa26.17■■□□□ 1.78
GAREM2-201ENST00000401533 TOP2BQ02880 1626 aa26.13■■□□□ 1.77
GAREM2-201ENST00000401533 KIF21BO75037 1637 aa26.11■■□□□ 1.77
GAREM2-201ENST00000401533 CFTRP13569 1480 aa26.09■■□□□ 1.77
GAREM2-201ENST00000401533 SIN3AQ96ST3 1273 aa26.09■■□□□ 1.77
GAREM2-201ENST00000401533 VPS8Q8N3P4 1428 aa26.07■■□□□ 1.76
GAREM2-201ENST00000401533 CADPSQ9ULU8 1353 aa26.05■■□□□ 1.76
GAREM2-201ENST00000401533 MTUS2Q5JR59 1369 aa26.04■■□□□ 1.76
GAREM2-201ENST00000401533 RRP7BPQ9NSQ0 103 aa26.04■■□□□ 1.76
GAREM2-201ENST00000401533 TONSLQ96HA7 1378 aa26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms