RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 CCNB3Q8WWL7 1395 aa19.9■□□□□ 0.78
SCAF4-202ENST00000399804 NESP48681 1621 aa19.89■□□□□ 0.78
SCAF4-202ENST00000399804 DNAJC5BQ9UF47 199 aa19.88■□□□□ 0.77
SCAF4-202ENST00000399804 PLEKHD1A6NEE1 506 aa19.87■□□□□ 0.77
SCAF4-202ENST00000399804 TONSLQ96HA7 1378 aa19.85■□□□□ 0.77
SCAF4-202ENST00000399804 NEFLP07196 543 aa19.83■□□□□ 0.77
SCAF4-202ENST00000399804 FHOD3Q2V2M9 1422 aa19.83■□□□□ 0.76
SCAF4-202ENST00000399804 CUX1P39880 1505 aa19.81■□□□□ 0.76
SCAF4-202ENST00000399804 TSPY4P0CV99 314 aa19.81■□□□□ 0.76
SCAF4-202ENST00000399804 TSPY10P0CW01 314 aa19.81■□□□□ 0.76
SCAF4-202ENST00000399804 KCNH8Q96L42 1107 aa19.78■□□□□ 0.76
SCAF4-202ENST00000399804 GTF3C3Q9Y5Q9 886 aa19.78■□□□□ 0.76
SCAF4-202ENST00000399804 TOP2BQ02880 1626 aa19.78■□□□□ 0.76
SCAF4-202ENST00000399804 CFDP1Q9UEE9 299 aaPredicted RBP19.78■□□□□ 0.76
SCAF4-202ENST00000399804 ACIN1Q9UKV3 1341 aaKnown RBP19.76■□□□□ 0.75
SCAF4-202ENST00000399804 FMN1Q68DA7 1419 aa19.76■□□□□ 0.75
SCAF4-202ENST00000399804 NPM1P06748 294 aaKnown RBP eCLIP19.75■□□□□ 0.75
SCAF4-202ENST00000399804 ANP32CO43423 234 aa19.74■□□□□ 0.75
SCAF4-202ENST00000399804 GAPVD1Q14C86 1478 aa19.73■□□□□ 0.75
SCAF4-202ENST00000399804 PRXQ9BXM0 1461 aa19.7■□□□□ 0.74
SCAF4-202ENST00000399804 SIN3AQ96ST3 1273 aa19.7■□□□□ 0.74
SCAF4-202ENST00000399804 KIF21BO75037 1637 aa19.7■□□□□ 0.74
SCAF4-202ENST00000399804 DDX10Q13206 875 aaKnown RBP19.7■□□□□ 0.74
SCAF4-202ENST00000399804 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.69■□□□□ 0.749e-9■■□□□ 12.8
SCAF4-202ENST00000399804 SLC4A1APQ9BWU0 796 aaKnown RBP19.69■□□□□ 0.74
SCAF4-202ENST00000399804 HIRIP3Q9BW71 556 aaPredicted RBP19.68■□□□□ 0.74
SCAF4-202ENST00000399804 ARHGAP35Q9NRY4 1499 aa19.66■□□□□ 0.74
SCAF4-202ENST00000399804 TOPBP1Q92547 1522 aa19.66■□□□□ 0.74
SCAF4-202ENST00000399804 AQRO60306 1485 aaKnown RBP eCLIP19.65■□□□□ 0.745e-7■■■□□ 18.5
SCAF4-202ENST00000399804 CLSPNQ9HAW4 1339 aa19.65■□□□□ 0.74
SCAF4-202ENST00000399804 POLA1P09884 1462 aaPredicted RBP19.64■□□□□ 0.73
SCAF4-202ENST00000399804 JPH4Q96JJ6 628 aa19.63■□□□□ 0.73
SCAF4-202ENST00000399804 ERICH3Q5RHP9 1530 aa19.62■□□□□ 0.73
SCAF4-202ENST00000399804 MIER1Q8N108 512 aa19.61■□□□□ 0.73
SCAF4-202ENST00000399804 CARMIL2Q6F5E8 1435 aa19.6■□□□□ 0.73
SCAF4-202ENST00000399804 ARAP1Q96P48 1450 aa19.6■□□□□ 0.73
SCAF4-202ENST00000399804 SETD5Q9C0A6 1442 aa19.59■□□□□ 0.73
SCAF4-202ENST00000399804 RAB3GAP2Q9H2M9 1393 aa19.57■□□□□ 0.72
SCAF4-202ENST00000399804 KDM2AQ9Y2K7 1162 aa19.54■□□□□ 0.72
SCAF4-202ENST00000399804 DNMBPQ6XZF7 1577 aa19.51■□□□□ 0.71
SCAF4-202ENST00000399804 MRC2Q9UBG0 1479 aa19.47■□□□□ 0.71
SCAF4-202ENST00000399804 CHGAP10645 457 aaKnown RBP19.45■□□□□ 0.7
SCAF4-202ENST00000399804 LAMC3Q9Y6N6 1575 aa19.45■□□□□ 0.7
SCAF4-202ENST00000399804 GRIN2BQ13224 1484 aa19.44■□□□□ 0.7
SCAF4-202ENST00000399804 EIF4G2P78344 907 aaKnown RBP eCLIP19.44■□□□□ 0.7
SCAF4-202ENST00000399804 ABCA10Q8WWZ4 1543 aa19.43■□□□□ 0.7
SCAF4-202ENST00000399804 PHLDB1Q86UU1 1377 aa19.41■□□□□ 0.7
SCAF4-202ENST00000399804 RGL3Q3MIN7 710 aa19.4■□□□□ 0.7
SCAF4-202ENST00000399804 FOXD1Q16676 465 aa19.4■□□□□ 0.7
SCAF4-202ENST00000399804 DHX57Q6P158 1386 aaKnown RBP19.4■□□□□ 0.7
SCAF4-202ENST00000399804 BIVM-ERCC5R4GMW8 1640 aa19.39■□□□□ 0.69
SCAF4-202ENST00000399804 LRRC9Q6ZRR7 1453 aa19.38■□□□□ 0.69
SCAF4-202ENST00000399804 TIMELESSQ9UNS1 1208 aa19.37■□□□□ 0.69
SCAF4-202ENST00000399804 URB2Q14146 1524 aaKnown RBP19.37■□□□□ 0.69
SCAF4-202ENST00000399804 CCDC18Q5T9S5 1454 aa19.36■□□□□ 0.69
SCAF4-202ENST00000399804 CASKIN1Q8WXD9 1431 aa19.36■□□□□ 0.69
SCAF4-202ENST00000399804 IFT140Q96RY7 1462 aa19.35■□□□□ 0.69
SCAF4-202ENST00000399804 BCANQ96GW7 911 aa19.34■□□□□ 0.69
SCAF4-202ENST00000399804 MPHOSPH9Q99550 1183 aa19.34■□□□□ 0.69
SCAF4-202ENST00000399804 PTPRGP23470 1445 aa19.33■□□□□ 0.68
SCAF4-202ENST00000399804 HNRNPMP52272 730 aaKnown RBP eCLIP19.31■□□□□ 0.68
SCAF4-202ENST00000399804 PKD2Q13563 968 aa19.28■□□□□ 0.68
SCAF4-202ENST00000399804 FGD6Q6ZV73 1430 aa19.27■□□□□ 0.68
SCAF4-202ENST00000399804 FAM9BQ8IZU0 186 aa19.27■□□□□ 0.68
SCAF4-202ENST00000399804 HNRNPUQ00839 825 aaKnown RBP eCLIP19.27■□□□□ 0.68
SCAF4-202ENST00000399804 PPP1R15AO75807 674 aaPredicted RBP19.26■□□□□ 0.67
SCAF4-202ENST00000399804 ESF1Q9H501 851 aaKnown RBP19.26■□□□□ 0.67
SCAF4-202ENST00000399804 ZNF644Q9H582 1327 aaPredicted RBP19.25■□□□□ 0.67
SCAF4-202ENST00000399804 FYCO1Q9BQS8 1478 aa19.25■□□□□ 0.67
SCAF4-202ENST00000399804 EFCAB2Q5VUJ9 269 aa19.25■□□□□ 0.67
SCAF4-202ENST00000399804 RRBP1Q9P2E9 1410 aaKnown RBP19.24■□□□□ 0.67
SCAF4-202ENST00000399804 SNAPC4Q5SXM2 1469 aa19.24■□□□□ 0.67
SCAF4-202ENST00000399804 EFCAB5A4FU69 1503 aa19.24■□□□□ 0.67
SCAF4-202ENST00000399804 STAG3Q9UJ98 1225 aa19.23■□□□□ 0.67
SCAF4-202ENST00000399804 ANKRD30AQ9BXX3 1397 aa19.23■□□□□ 0.67
SCAF4-202ENST00000399804 MYOM3Q5VTT5 1437 aa19.23■□□□□ 0.67
SCAF4-202ENST00000399804 CARD11Q9BXL7 1154 aa19.22■□□□□ 0.67
SCAF4-202ENST00000399804 NUP155O75694 1391 aa19.21■□□□□ 0.67
SCAF4-202ENST00000399804 MYT1Q01538 1121 aa19.21■□□□□ 0.67
SCAF4-202ENST00000399804 NCOA2Q15596 1464 aa19.2■□□□□ 0.66
SCAF4-202ENST00000399804 MRS2Q9HD23 443 aa19.2■□□□□ 0.66
SCAF4-202ENST00000399804 DCAF11Q8TEB1 546 aa19.19■□□□□ 0.66
SCAF4-202ENST00000399804 ERICH6Q7L0X2 663 aa19.17■□□□□ 0.66
SCAF4-202ENST00000399804 ZNF608Q9ULD9 1512 aaPredicted RBP19.17■□□□□ 0.66
SCAF4-202ENST00000399804 L3MBTL2Q969R5 705 aa19.17■□□□□ 0.66
SCAF4-202ENST00000399804 TIAM1Q13009 1591 aa19.16■□□□□ 0.66
SCAF4-202ENST00000399804 TMC1Q8TDI8 760 aa19.15■□□□□ 0.66
SCAF4-202ENST00000399804 SENP3Q9H4L4 574 aaPredicted RBP19.15■□□□□ 0.66
SCAF4-202ENST00000399804 PLPPR3Q6T4P5 718 aa19.15■□□□□ 0.66
SCAF4-202ENST00000399804 HSPA5P11021 654 aaKnown RBP19.13■□□□□ 0.65
SCAF4-202ENST00000399804 RSPH4AQ5TD94 716 aa19.13■□□□□ 0.65
SCAF4-202ENST00000399804 KIAA0586Q9BVV6 1533 aa19.12■□□□□ 0.65
SCAF4-202ENST00000399804 PRDM2Q13029 1718 aa19.12■□□□□ 0.65
SCAF4-202ENST00000399804 CUL7Q14999 1698 aa19.12■□□□□ 0.65
SCAF4-202ENST00000399804 PRG4Q92954 1404 aaPredicted RBP19.1■□□□□ 0.65
SCAF4-202ENST00000399804 OSCARQ8IYS5 282 aa19.1■□□□□ 0.65
SCAF4-202ENST00000399804 FKBP8Q14318 412 aa19.09■□□□□ 0.65
SCAF4-202ENST00000399804 SALL2Q9Y467 1007 aaPredicted RBP19.09■□□□□ 0.65
SCAF4-202ENST00000399804 PCF11O94913 1555 aaKnown RBP19.05■□□□□ 0.64
SCAF4-202ENST00000399804 SPAG9O60271 1321 aaKnown RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms