RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.34□□□□□ -0.271e-323■■■■■ 61.3
SCAF4-202ENST00000399804 SF3B1O75533 1304 aaKnown RBP eCLIP14.42□□□□□ -0.11e-6■■■■■ 57.5
SCAF4-202ENST00000399804 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.49■□□□□ 0.078e-7■■■■■ 56.9
SCAF4-202ENST00000399804 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.49□□□□□ -0.092e-6■■■■■ 54.9
SCAF4-202ENST00000399804 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.92■□□□□ 0.625e-6■■■■■ 46.2
SCAF4-202ENST00000399804 CPSF6Q16630 551 aaKnown RBP eCLIP13.98□□□□□ -0.172e-9■■■■■ 44.3
SCAF4-202ENST00000399804 WRNQ14191 1432 aaPredicted RBP eCLIP20.94■□□□□ 0.941e-8■■■■■ 41.8
SCAF4-202ENST00000399804 DDX6P26196 483 aaKnown RBP eCLIP13.89□□□□□ -0.192e-9■■■■■ 40
SCAF4-202ENST00000399804 RBM22Q9NW64 420 aaKnown RBP eCLIP14.47□□□□□ -0.091e-6■■■■■ 34.8
SCAF4-202ENST00000399804 CSTF2P33240 577 aaKnown RBP eCLIP13.24□□□□□ -0.296e-21■■■■■ 32.8
SCAF4-202ENST00000399804 PABPC4Q13310 644 aaKnown RBP eCLIP15.62■□□□□ 0.096e-9■■■■■ 32.7
SCAF4-202ENST00000399804 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.91□□□□□ -0.348e-15■■■■■ 32
SCAF4-202ENST00000399804 NIPBLQ6KC79 2804 aaeCLIP9.58□□□□□ -0.886e-8■■■■■ 30.6
SCAF4-202ENST00000399804 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.84□□□□□ -0.195e-6■■■■■ 29.2
SCAF4-202ENST00000399804 EFTUD2Q15029 972 aaKnown RBP eCLIP14.35□□□□□ -0.115e-7■■■■■ 28.8
SCAF4-202ENST00000399804 FMR1Q06787 632 aaKnown RBP eCLIP15.5■□□□□ 0.078e-7■■■■■ 28.2
SCAF4-202ENST00000399804 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.41□□□□□ -0.19e-6■■■■□ 26.1
SCAF4-202ENST00000399804 RBM15Q96T37 977 aaKnown RBP eCLIP14.76□□□□□ -0.053e-12■■■■□ 25
SCAF4-202ENST00000399804 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.36□□□□□ -0.114e-8■■■■□ 24.8
SCAF4-202ENST00000399804 KHSRPQ92945 711 aaKnown RBP eCLIP14.08□□□□□ -0.169e-8■■■■□ 23.9
SCAF4-202ENST00000399804 ZRANB2O95218 330 aaKnown RBP eCLIP15.02□□□□□ -0.011e-6■■■■□ 23.3
SCAF4-202ENST00000399804 TRA2AQ13595 282 aaKnown RBP eCLIP12.74□□□□□ -0.371e-13■■■■□ 23.2
SCAF4-202ENST00000399804 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.03■□□□□ 0.481e-23■■■■□ 23.1
SCAF4-202ENST00000399804 QKIQ96PU8 341 aaKnown RBP eCLIP14.32□□□□□ -0.126e-7■■■■□ 23
SCAF4-202ENST00000399804 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.85■□□□□ 0.133e-10■■■■□ 22.1
SCAF4-202ENST00000399804 TIAL1Q01085 375 aaKnown RBP eCLIP13.38□□□□□ -0.272e-6■■■■□ 22
SCAF4-202ENST00000399804 PUM1Q14671 1186 aaKnown RBP eCLIP13.07□□□□□ -0.323e-9■■■■□ 21.1
SCAF4-202ENST00000399804 U2AF1Q01081 240 aaKnown RBP eCLIP18.35■□□□□ 0.539e-23■■■■□ 19.4
SCAF4-202ENST00000399804 PCBP2Q15366 365 aaKnown RBP eCLIP13.64□□□□□ -0.235e-12■■■□□ 19.2
SCAF4-202ENST00000399804 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.09□□□□□ -0.156e-6■■■□□ 19.1
SCAF4-202ENST00000399804 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.25□□□□□ -0.137e-11■■■□□ 19.1
SCAF4-202ENST00000399804 AQRO60306 1485 aaKnown RBP eCLIP19.65■□□□□ 0.745e-7■■■□□ 18.5
SCAF4-202ENST00000399804 TIA1P31483 386 aaKnown RBP eCLIP13.55□□□□□ -0.241e-6■■■□□ 18.1
SCAF4-202ENST00000399804 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.88□□□□□ -0.512e-7■■■□□ 16.8
SCAF4-202ENST00000399804 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.71□□□□□ -0.067e-6■■■□□ 16.5
SCAF4-202ENST00000399804 GPKOWQ92917 476 aaPredicted RBP eCLIP15.95■□□□□ 0.142e-6■■■□□ 16.4
SCAF4-202ENST00000399804 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.73□□□□□ -0.219e-7■■■□□ 16.3
SCAF4-202ENST00000399804 U2AF2P26368 475 aaKnown RBP eCLIP15.71■□□□□ 0.113e-9■■■□□ 16.3
SCAF4-202ENST00000399804 NCBP2P52298 156 aaKnown RBP eCLIP13.54□□□□□ -0.242e-7■■■□□ 16.2
SCAF4-202ENST00000399804 SF3A3Q12874 501 aaKnown RBP eCLIP14.98□□□□□ -0.011e-7■■■□□ 16.1
SCAF4-202ENST00000399804 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.8□□□□□ -0.045e-7■■■□□ 16
SCAF4-202ENST00000399804 DDX3XO00571 662 aaKnown RBP eCLIP14.94□□□□□ -0.024e-24■■■□□ 15.6
SCAF4-202ENST00000399804 LSM11P83369 360 aaKnown RBP eCLIP12.88□□□□□ -0.352e-6■■■□□ 15.4
SCAF4-202ENST00000399804 YBX3P16989 372 aaKnown RBP eCLIP14.72□□□□□ -0.058e-7■■■□□ 14.9
SCAF4-202ENST00000399804 RBFOX2O43251 390 aaKnown RBP eCLIP11.61□□□□□ -0.555e-7■■□□□ 14.3
SCAF4-202ENST00000399804 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.93■□□□□ 0.142e-6■■□□□ 14.1
SCAF4-202ENST00000399804 PPIGQ13427 754 aaKnown RBP eCLIP14.09□□□□□ -0.158e-9■■□□□ 13.7
SCAF4-202ENST00000399804 NOLC1Q14978 699 aaKnown RBP eCLIP15.93■□□□□ 0.142e-7■■□□□ 13.6
SCAF4-202ENST00000399804 LARP4Q71RC2 724 aaKnown RBP eCLIP13.63□□□□□ -0.233e-9■■□□□ 13.6
SCAF4-202ENST00000399804 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.73■□□□□ 0.275e-7■■□□□ 12.8
SCAF4-202ENST00000399804 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.69■□□□□ 0.749e-9■■□□□ 12.8
SCAF4-202ENST00000399804 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.79■□□□□ 0.281e-7■■□□□ 12.7
SCAF4-202ENST00000399804 ZNF622Q969S3 477 aaKnown RBP eCLIP16.38■□□□□ 0.213e-9■■□□□ 12.4
SCAF4-202ENST00000399804 SF3B4Q15427 424 aaKnown RBP eCLIP12.73□□□□□ -0.377e-7■■□□□ 12.3
SCAF4-202ENST00000399804 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.02□□□□□ -0.012e-15■■□□□ 11.9
SCAF4-202ENST00000399804 HNRNPLP14866 589 aaKnown RBP eCLIP14.13□□□□□ -0.154e-9■□□□□ 11.3
SCAF4-202ENST00000399804 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.81■□□□□ 0.122e-7■□□□□ 11.2
SCAF4-202ENST00000399804 AATFQ9NY61 560 aaKnown RBP eCLIP16.26■□□□□ 0.194e-6■□□□□ 10.1
SCAF4-202ENST00000399804 NONOQ15233 471 aaKnown RBP eCLIP15.92■□□□□ 0.142e-9■□□□□ 10
SCAF4-202ENST00000399804 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.46□□□□□ -0.266e-8■□□□□ 9.9
SCAF4-202ENST00000399804 G3BP1Q13283 466 aaKnown RBP eCLIP17.28■□□□□ 0.362e-6■□□□□ 9.7
SCAF4-202ENST00000399804 TARDBPQ13148 414 aaKnown RBP eCLIP13.43□□□□□ -0.263e-6■□□□□ 9.1
SCAF4-202ENST00000399804 PTBP1P26599 531 aaKnown RBP eCLIP12.59□□□□□ -0.397e-6■□□□□ 8.1
Retrieved 63 of 63 RNA–protein pairs in 13.4 ms