RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 NUP160Q12769 1436 aa24.17■■□□□ 1.46
SCAF11-204ENST00000395454 CTTNBP2Q8WZ74 1663 aa24.09■■□□□ 1.45
SCAF11-204ENST00000395454 TNIKQ9UKE5 1360 aa24.09■■□□□ 1.45
SCAF11-204ENST00000395454 KIAA0586Q9BVV6 1533 aa24.07■■□□□ 1.44
SCAF11-204ENST00000395454 CLASP1Q7Z460 1538 aa24.05■■□□□ 1.44
SCAF11-204ENST00000395454 IQGAP2Q13576 1575 aa24.04■■□□□ 1.44
SCAF11-204ENST00000395454 RANGAP1P46060 587 aaPredicted RBP24■■□□□ 1.43
SCAF11-204ENST00000395454 JPH4Q96JJ6 628 aa23.98■■□□□ 1.43
SCAF11-204ENST00000395454 CEP162Q5TB80 1403 aa23.95■■□□□ 1.43
SCAF11-204ENST00000395454 SHROOM2Q13796 1616 aa23.91■■□□□ 1.42
SCAF11-204ENST00000395454 UGGT2Q9NYU1 1516 aa23.88■■□□□ 1.41
SCAF11-204ENST00000395454 PRG4Q92954 1404 aaPredicted RBP23.88■■□□□ 1.41
SCAF11-204ENST00000395454 CARMIL2Q6F5E8 1435 aa23.82■■□□□ 1.4
SCAF11-204ENST00000395454 DISP1Q96F81 1524 aa23.82■■□□□ 1.4
SCAF11-204ENST00000395454 ERCC6L2Q5T890 1561 aa23.82■■□□□ 1.4
SCAF11-204ENST00000395454 P3H3Q8IVL6 736 aa23.81■■□□□ 1.4
SCAF11-204ENST00000395454 CLIP1P30622 1438 aa23.81■■□□□ 1.4
SCAF11-204ENST00000395454 KIAA0556O60303 1618 aa23.8■■□□□ 1.4
SCAF11-204ENST00000395454 SAMD9Q5K651 1589 aa23.79■■□□□ 1.4
SCAF11-204ENST00000395454 EFCAB5A4FU69 1503 aa23.78■■□□□ 1.4
SCAF11-204ENST00000395454 ARHGEF11O15085 1522 aa23.78■■□□□ 1.4
SCAF11-204ENST00000395454 ARHGAP35Q9NRY4 1499 aa23.77■■□□□ 1.4
SCAF11-204ENST00000395454 TTBK1Q5TCY1 1321 aaPredicted RBP23.75■■□□□ 1.39
SCAF11-204ENST00000395454 TRIM26Q12899 539 aaPredicted RBP23.73■■□□□ 1.39
SCAF11-204ENST00000395454 FHOD3Q2V2M9 1422 aa23.73■■□□□ 1.39
SCAF11-204ENST00000395454 DNAJC5Q9H3Z4 198 aa23.72■■□□□ 1.39
SCAF11-204ENST00000395454 RIMBP3CA6NJZ7 1639 aa23.72■■□□□ 1.39
SCAF11-204ENST00000395454 RIMBP3BA6NNM3 1639 aa23.72■■□□□ 1.39
SCAF11-204ENST00000395454 RIMBP3Q9UFD9 1639 aa23.72■■□□□ 1.39
SCAF11-204ENST00000395454 PCGF6Q9BYE7 350 aa23.71■■□□□ 1.39
SCAF11-204ENST00000395454 ARAP1Q96P48 1450 aa23.67■■□□□ 1.38
SCAF11-204ENST00000395454 PTPRGP23470 1445 aa23.66■■□□□ 1.38
SCAF11-204ENST00000395454 CYB5RLQ6IPT4 315 aa23.59■■□□□ 1.37
SCAF11-204ENST00000395454 FMN1Q68DA7 1419 aa23.58■■□□□ 1.37
SCAF11-204ENST00000395454 VPS8Q8N3P4 1428 aa23.57■■□□□ 1.36
SCAF11-204ENST00000395454 PLB1Q6P1J6 1458 aa23.54■■□□□ 1.36
SCAF11-204ENST00000395454 UACAQ9BZF9 1416 aa23.5■■□□□ 1.35
SCAF11-204ENST00000395454 ATP1B4Q9UN42 357 aaPredicted RBP23.49■■□□□ 1.35
SCAF11-204ENST00000395454 RAPGEF6Q8TEU7 1601 aa23.48■■□□□ 1.35
SCAF11-204ENST00000395454 ABCA8O94911 1581 aa23.47■■□□□ 1.35
SCAF11-204ENST00000395454 PCF11O94913 1555 aaKnown RBP23.46■■□□□ 1.35
SCAF11-204ENST00000395454 ABCC2Q92887 1545 aa23.45■■□□□ 1.34
SCAF11-204ENST00000395454 ADCY10Q96PN6 1610 aa23.44■■□□□ 1.34
SCAF11-204ENST00000395454 ARID3CA6NKF2 412 aa23.43■■□□□ 1.34
SCAF11-204ENST00000395454 CASKIN1Q8WXD9 1431 aa23.43■■□□□ 1.34
SCAF11-204ENST00000395454 UHRF1BP1LA0JNW5 1464 aa23.41■■□□□ 1.34
SCAF11-204ENST00000395454 FYCO1Q9BQS8 1478 aa23.41■■□□□ 1.34
SCAF11-204ENST00000395454 HECW1Q76N89 1606 aa23.4■■□□□ 1.34
SCAF11-204ENST00000395454 NUP153P49790 1475 aaKnown RBP23.4■■□□□ 1.34
SCAF11-204ENST00000395454 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.35■■□□□ 1.33
SCAF11-204ENST00000395454 HRCP23327 699 aa23.35■■□□□ 1.33
SCAF11-204ENST00000395454 HNRNPUL2Q1KMD3 747 aaKnown RBP23.35■■□□□ 1.33
SCAF11-204ENST00000395454 NPM1P06748 294 aaKnown RBP eCLIP23.34■■□□□ 1.33
SCAF11-204ENST00000395454 EPRSP07814 1512 aaKnown RBP23.33■■□□□ 1.33
SCAF11-204ENST00000395454 LRRIQ1Q96JM4 1722 aa23.32■■□□□ 1.32
SCAF11-204ENST00000395454 KDM5BQ9UGL1 1544 aa23.32■■□□□ 1.32
SCAF11-204ENST00000395454 ATP10BO94823 1461 aa23.31■■□□□ 1.32
SCAF11-204ENST00000395454 CDK13Q14004 1512 aaKnown RBP23.31■■□□□ 1.32
SCAF11-204ENST00000395454 ZCCHC11Q5TAX3 1644 aaKnown RBP23.3■■□□□ 1.32
SCAF11-204ENST00000395454 CCDC18Q5T9S5 1454 aa23.29■■□□□ 1.32
SCAF11-204ENST00000395454 APLP2Q06481 763 aa23.28■■□□□ 1.32
SCAF11-204ENST00000395454 PPARGC1BQ86YN6 1023 aaKnown RBP23.28■■□□□ 1.32
SCAF11-204ENST00000395454 TIAM1Q13009 1591 aa23.21■■□□□ 1.31
SCAF11-204ENST00000395454 CDK11AQ9UQ88 783 aaPredicted RBP23.21■■□□□ 1.31
SCAF11-204ENST00000395454 MAP3K1Q13233 1512 aa23.21■■□□□ 1.31
SCAF11-204ENST00000395454 CFAP43Q8NDM7 1665 aa23.2■■□□□ 1.3
SCAF11-204ENST00000395454 PLEKHD1A6NEE1 506 aa23.19■■□□□ 1.3
SCAF11-204ENST00000395454 ASXL2Q76L83 1435 aa23.18■■□□□ 1.3
SCAF11-204ENST00000395454 MAPKBP1O60336 1514 aa23.16■■□□□ 1.3
SCAF11-204ENST00000395454 MTUS2Q5JR59 1369 aa23.15■■□□□ 1.3
SCAF11-204ENST00000395454 WDR7Q9Y4E6 1490 aa23.14■■□□□ 1.3
SCAF11-204ENST00000395454 MAGI3Q5TCQ9 1506 aa23.14■■□□□ 1.29
SCAF11-204ENST00000395454 KANK4Q5T7N3 995 aaPredicted RBP23.13■■□□□ 1.29
SCAF11-204ENST00000395454 KCNH8Q96L42 1107 aa23.12■■□□□ 1.29
SCAF11-204ENST00000395454 LRRC9Q6ZRR7 1453 aa23.11■■□□□ 1.29
SCAF11-204ENST00000395454 TROQ12816 1431 aaPredicted RBP23.11■■□□□ 1.29
SCAF11-204ENST00000395454 EHBP1L1Q8N3D4 1523 aa23.08■■□□□ 1.29
SCAF11-204ENST00000395454 KIF14Q15058 1648 aa23.03■■□□□ 1.28
SCAF11-204ENST00000395454 ABCC10Q5T3U5 1492 aa23■■□□□ 1.27
SCAF11-204ENST00000395454 SUPT6HQ7KZ85 1726 aaKnown RBP22.99■■□□□ 1.27
SCAF11-204ENST00000395454 DIP2BQ9P265 1576 aa22.99■■□□□ 1.27
SCAF11-204ENST00000395454 FAM69CQ0P6D2 419 aa22.99■■□□□ 1.27
SCAF11-204ENST00000395454 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.97■■□□□ 1.271e-6■■■■□ 23.9
SCAF11-204ENST00000395454 NCOA2Q15596 1464 aa22.96■■□□□ 1.27
SCAF11-204ENST00000395454 TRHP20396 242 aaPredicted RBP22.96■■□□□ 1.27
SCAF11-204ENST00000395454 RRBP1Q9P2E9 1410 aaKnown RBP22.95■■□□□ 1.26
SCAF11-204ENST00000395454 TTC37Q6PGP7 1564 aa22.95■■□□□ 1.26
SCAF11-204ENST00000395454 KIF13AQ9H1H9 1805 aa22.94■■□□□ 1.26
SCAF11-204ENST00000395454 ZEB1P37275 1124 aaPredicted RBP22.94■■□□□ 1.26
SCAF11-204ENST00000395454 ABCA9Q8IUA7 1624 aa22.93■■□□□ 1.26
SCAF11-204ENST00000395454 GLI2P10070 1586 aa22.92■■□□□ 1.26
SCAF11-204ENST00000395454 CCNB3Q8WWL7 1395 aa22.9■■□□□ 1.26
SCAF11-204ENST00000395454 CD109Q6YHK3 1445 aa22.89■■□□□ 1.25
SCAF11-204ENST00000395454 PHLDB1Q86UU1 1377 aa22.87■■□□□ 1.25
SCAF11-204ENST00000395454 MYO5CQ9NQX4 1742 aa22.87■■□□□ 1.25
SCAF11-204ENST00000395454 MAP3K4Q9Y6R4 1608 aa22.87■■□□□ 1.25
SCAF11-204ENST00000395454 CDC42BPAQ5VT25 1732 aa22.86■■□□□ 1.25
SCAF11-204ENST00000395454 TSPOAP1O95153 1857 aa22.85■■□□□ 1.25
SCAF11-204ENST00000395454 GPATCH8Q9UKJ3 1502 aaKnown RBP22.85■■□□□ 1.25
SCAF11-204ENST00000395454 ITSN2Q9NZM3 1697 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms