RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 NISCHQ9Y2I1 1504 aa34.95■■■■□ 3.19
SCAF11-204ENST00000395454 CCDC180Q9P1Z9 1646 aa30.8■■■□□ 2.52
SCAF11-204ENST00000395454 ABCC9O60706 1549 aa29.75■■■□□ 2.35
SCAF11-204ENST00000395454 ZCCHC6Q5VYS8 1495 aaKnown RBP29.22■■■□□ 2.27
SCAF11-204ENST00000395454 DCAF8L2P0C7V8 631 aa29.14■■■□□ 2.26
SCAF11-204ENST00000395454 DCAF1Q9Y4B6 1507 aa28.88■■■□□ 2.21
SCAF11-204ENST00000395454 NACADO15069 1562 aa28.85■■■□□ 2.21
SCAF11-204ENST00000395454 MYO15BQ96JP2 1530 aa28.8■■■□□ 2.2
SCAF11-204ENST00000395454 RB1CC1Q8TDY2 1594 aa28.78■■■□□ 2.2
SCAF11-204ENST00000395454 SCRIBQ14160 1630 aa28.24■■■□□ 2.11
SCAF11-204ENST00000395454 UNC13AQ9UPW8 1703 aa28.16■■■□□ 2.1
SCAF11-204ENST00000395454 SHROOM4Q9ULL8 1493 aa28.05■■■□□ 2.08
SCAF11-204ENST00000395454 PABPN1Q86U42 306 aaKnown RBP eCLIP27.91■■■□□ 2.06
SCAF11-204ENST00000395454 BICRAQ9NZM4 1560 aa27.88■■■□□ 2.05
SCAF11-204ENST00000395454 CECR2Q9BXF3 1484 aa27.2■■□□□ 1.94
SCAF11-204ENST00000395454 EIF4G1Q04637 1599 aaKnown RBP27.14■■□□□ 1.93
SCAF11-204ENST00000395454 BAZ1AQ9NRL2 1556 aaPredicted RBP27.06■■□□□ 1.92
SCAF11-204ENST00000395454 SMARCA4P51532 1647 aa27.02■■□□□ 1.92
SCAF11-204ENST00000395454 MROH2BQ7Z745 1585 aa26.96■■□□□ 1.91
SCAF11-204ENST00000395454 CC2D2AQ9P2K1 1620 aa26.9■■□□□ 1.9
SCAF11-204ENST00000395454 RSF1Q96T23 1441 aaPredicted RBP26.84■■□□□ 1.89
SCAF11-204ENST00000395454 DNAJC5BQ9UF47 199 aa26.82■■□□□ 1.88
SCAF11-204ENST00000395454 ATAD2BQ9ULI0 1458 aa26.74■■□□□ 1.87
SCAF11-204ENST00000395454 WIZO95785 1651 aa26.72■■□□□ 1.87
SCAF11-204ENST00000395454 SMARCA2P51531 1590 aa26.72■■□□□ 1.87
SCAF11-204ENST00000395454 PEG3Q9GZU2 1588 aa26.71■■□□□ 1.87
SCAF11-204ENST00000395454 SUPT5HO00267 1087 aaKnown RBP26.66■■□□□ 1.86
SCAF11-204ENST00000395454 NCAPD3P42695 1498 aa26.62■■□□□ 1.85
SCAF11-204ENST00000395454 BAZ1BQ9UIG0 1483 aaKnown RBP26.57■■□□□ 1.84
SCAF11-204ENST00000395454 HMGXB3Q12766 1538 aa26.54■■□□□ 1.84
SCAF11-204ENST00000395454 TOP2AP11388 1531 aaKnown RBP26.43■■□□□ 1.82
SCAF11-204ENST00000395454 CCDC88BA6NC98 1476 aa26.14■■□□□ 1.77
SCAF11-204ENST00000395454 CADPSQ9ULU8 1353 aa25.91■■□□□ 1.74
SCAF11-204ENST00000395454 NESP48681 1621 aa25.89■■□□□ 1.74
SCAF11-204ENST00000395454 LAMC3Q9Y6N6 1575 aa25.85■■□□□ 1.73
SCAF11-204ENST00000395454 CFTRP13569 1480 aa25.84■■□□□ 1.73
SCAF11-204ENST00000395454 PRDM2Q13029 1718 aa25.69■■□□□ 1.7
SCAF11-204ENST00000395454 PDS5BQ9NTI5 1447 aa25.68■■□□□ 1.7
SCAF11-204ENST00000395454 CHIC1Q5VXU3 224 aa25.63■■□□□ 1.69
SCAF11-204ENST00000395454 FANCD2Q9BXW9 1451 aa25.62■■□□□ 1.69
SCAF11-204ENST00000395454 ERCC6Q03468 1493 aa25.61■■□□□ 1.69
SCAF11-204ENST00000395454 KIF21AQ7Z4S6 1674 aa25.59■■□□□ 1.69
SCAF11-204ENST00000395454 CEP164Q9UPV0 1460 aa25.54■■□□□ 1.68
SCAF11-204ENST00000395454 ABCC8Q09428 1581 aa25.39■■□□□ 1.65
SCAF11-204ENST00000395454 MRC2Q9UBG0 1479 aa25.37■■□□□ 1.65
SCAF11-204ENST00000395454 THOC2Q8NI27 1593 aaKnown RBP25.34■■□□□ 1.65
SCAF11-204ENST00000395454 URB2Q14146 1524 aaKnown RBP25.32■■□□□ 1.64
SCAF11-204ENST00000395454 WRNQ14191 1432 aaPredicted RBP eCLIP25.31■■□□□ 1.64
SCAF11-204ENST00000395454 WDR62O43379 1518 aa25.26■■□□□ 1.63
SCAF11-204ENST00000395454 CUX1P39880 1505 aa25.26■■□□□ 1.63
SCAF11-204ENST00000395454 DNMBPQ6XZF7 1577 aa25.26■■□□□ 1.63
SCAF11-204ENST00000395454 TOPBP1Q92547 1522 aa25.26■■□□□ 1.63
SCAF11-204ENST00000395454 SYNJ1O43426 1573 aa25.22■■□□□ 1.63
SCAF11-204ENST00000395454 TOP2BQ02880 1626 aa25.17■■□□□ 1.62
SCAF11-204ENST00000395454 BIVM-ERCC5R4GMW8 1640 aa25.15■■□□□ 1.62
SCAF11-204ENST00000395454 TRIM41Q8WV44 630 aa25.12■■□□□ 1.61
SCAF11-204ENST00000395454 FGD5Q6ZNL6 1462 aa25.11■■□□□ 1.61
SCAF11-204ENST00000395454 POLA1P09884 1462 aaPredicted RBP25.09■■□□□ 1.61
SCAF11-204ENST00000395454 CUX2O14529 1486 aa25.07■■□□□ 1.6
SCAF11-204ENST00000395454 SOGA1O94964 1423 aa25■■□□□ 1.59
SCAF11-204ENST00000395454 RAD54L2Q9Y4B4 1467 aa25■■□□□ 1.59
SCAF11-204ENST00000395454 IFT140Q96RY7 1462 aa24.96■■□□□ 1.59
SCAF11-204ENST00000395454 TARBP1Q13395 1621 aaKnown RBP24.92■■□□□ 1.58
SCAF11-204ENST00000395454 ABCA10Q8WWZ4 1543 aa24.86■■□□□ 1.57
SCAF11-204ENST00000395454 ZNF608Q9ULD9 1512 aaPredicted RBP24.84■■□□□ 1.57
SCAF11-204ENST00000395454 WDR97A6NE52 1622 aa24.84■■□□□ 1.57
SCAF11-204ENST00000395454 TDRD9Q8NDG6 1382 aaKnown RBP24.82■■□□□ 1.56
SCAF11-204ENST00000395454 AQRO60306 1485 aaKnown RBP eCLIP24.78■■□□□ 1.56
SCAF11-204ENST00000395454 EIF4G3O43432 1585 aaKnown RBP24.76■■□□□ 1.55
SCAF11-204ENST00000395454 KIF27Q86VH2 1401 aa24.74■■□□□ 1.55
SCAF11-204ENST00000395454 GAPVD1Q14C86 1478 aa24.72■■□□□ 1.55
SCAF11-204ENST00000395454 ABCA5Q8WWZ7 1642 aa24.72■■□□□ 1.55
SCAF11-204ENST00000395454 RUSC2Q8N2Y8 1516 aa24.7■■□□□ 1.54
SCAF11-204ENST00000395454 FAM9AQ8IZU1 332 aaPredicted RBP24.64■■□□□ 1.53
SCAF11-204ENST00000395454 PBRM1Q86U86 1689 aa24.63■■□□□ 1.53
SCAF11-204ENST00000395454 GRIN2BQ13224 1484 aa24.62■■□□□ 1.53
SCAF11-204ENST00000395454 EEA1Q15075 1411 aa24.58■■□□□ 1.52
SCAF11-204ENST00000395454 ERICH3Q5RHP9 1530 aa24.58■■□□□ 1.52
SCAF11-204ENST00000395454 IGF1RP08069 1367 aa24.56■■□□□ 1.52
SCAF11-204ENST00000395454 LOC105371045A0A1W2PR82 267 aa24.56■■□□□ 1.52
SCAF11-204ENST00000395454 SNAPC4Q5SXM2 1469 aa24.55■■□□□ 1.52
SCAF11-204ENST00000395454 CSRNP3Q8WYN3 585 aa24.51■■□□□ 1.51
SCAF11-204ENST00000395454 MAGI1Q96QZ7 1491 aaPredicted RBP24.5■■□□□ 1.51
SCAF11-204ENST00000395454 CUL7Q14999 1698 aa24.46■■□□□ 1.51
SCAF11-204ENST00000395454 ADAMTS12P58397 1594 aa24.46■■□□□ 1.51
SCAF11-204ENST00000395454 CARMIL1Q5VZK9 1371 aa24.44■■□□□ 1.5
SCAF11-204ENST00000395454 FBLN2P98095 1184 aa24.44■■□□□ 1.5
SCAF11-204ENST00000395454 FHAD1B1AJZ9 1412 aa24.43■■□□□ 1.5
SCAF11-204ENST00000395454 CHMP7Q8WUX9 453 aaPredicted RBP24.41■■□□□ 1.5
SCAF11-204ENST00000395454 SYNJ2O15056 1496 aa24.41■■□□□ 1.5
SCAF11-204ENST00000395454 PRXQ9BXM0 1461 aa24.37■■□□□ 1.49
SCAF11-204ENST00000395454 CHD1O14646 1710 aa24.35■■□□□ 1.49
SCAF11-204ENST00000395454 RAPGEF2Q9Y4G8 1499 aa24.35■■□□□ 1.49
SCAF11-204ENST00000395454 EHMT2Q96KQ7 1210 aa24.33■■□□□ 1.49
SCAF11-204ENST00000395454 GRIN2AQ12879 1464 aa24.32■■□□□ 1.48
SCAF11-204ENST00000395454 KIF21BO75037 1637 aa24.29■■□□□ 1.48
SCAF11-204ENST00000395454 GOLGA3Q08378 1498 aa24.21■■□□□ 1.47
SCAF11-204ENST00000395454 OSCARQ8IYS5 282 aa24.18■■□□□ 1.46
SCAF11-204ENST00000395454 CEP170Q5SW79 1584 aa24.18■■□□□ 1.46
SCAF11-204ENST00000395454 UBTFP17480 764 aaKnown RBP24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms