RNA–Protein interactions for RNA: ENST00000394081.7

RARA-202, Transcript of retinoic acid receptor alpha, humanhuman

TSL 1 (best) BASIC

Gene RARA, Length 2,285 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-202ENST00000394081 CUX1P39880 1505 aa32.24■■■□□ 2.75
RARA-202ENST00000394081 PPP1R15AO75807 674 aaPredicted RBP32.24■■■□□ 2.75
RARA-202ENST00000394081 RBM19Q9Y4C8 960 aaKnown RBP32.21■■■□□ 2.75
RARA-202ENST00000394081 BCANQ96GW7 911 aa32.19■■■□□ 2.74
RARA-202ENST00000394081 DDX10Q13206 875 aaKnown RBP32.16■■■□□ 2.74
RARA-202ENST00000394081 LRRC9Q6ZRR7 1453 aa32.11■■■□□ 2.73
RARA-202ENST00000394081 ITGAEP38570 1179 aa32.09■■■□□ 2.73
RARA-202ENST00000394081 HMGXB3Q12766 1538 aa32.08■■■□□ 2.73
RARA-202ENST00000394081 ANP32CO43423 234 aa32.05■■■□□ 2.72
RARA-202ENST00000394081 CFAP43Q8NDM7 1665 aa32.03■■■□□ 2.72
RARA-202ENST00000394081 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32■■■□□ 2.71
RARA-202ENST00000394081 FHAD1B1AJZ9 1412 aa31.98■■■□□ 2.71
RARA-202ENST00000394081 PHLDB1Q86UU1 1377 aa31.98■■■□□ 2.71
RARA-202ENST00000394081 SIN3AQ96ST3 1273 aa31.96■■■□□ 2.71
RARA-202ENST00000394081 NCAPD3P42695 1498 aa31.95■■■□□ 2.71
RARA-202ENST00000394081 CFTRP13569 1480 aa31.94■■■□□ 2.7
RARA-202ENST00000394081 FANCIQ9NVI1 1328 aa31.94■■■□□ 2.7
RARA-202ENST00000394081 IGF1RP08069 1367 aa31.88■■■□□ 2.69
RARA-202ENST00000394081 TRIM52Q96A61 297 aa31.87■■■□□ 2.69
RARA-202ENST00000394081 PRDM2Q13029 1718 aa31.85■■■□□ 2.69
RARA-202ENST00000394081 ERICH6BQ5W0A0 696 aa31.82■■■□□ 2.68
RARA-202ENST00000394081 FAM50AQ14320 339 aaKnown RBP31.79■■■□□ 2.68
RARA-202ENST00000394081 PCF11O94913 1555 aaKnown RBP31.77■■■□□ 2.68
RARA-202ENST00000394081 MSH5O43196 834 aa31.77■■■□□ 2.68
RARA-202ENST00000394081 CARMIL1Q5VZK9 1371 aa31.76■■■□□ 2.67
RARA-202ENST00000394081 MYT1LQ9UL68 1186 aa31.74■■■□□ 2.67
RARA-202ENST00000394081 FYCO1Q9BQS8 1478 aa31.73■■■□□ 2.67
RARA-202ENST00000394081 TONSLQ96HA7 1378 aa31.73■■■□□ 2.67
RARA-202ENST00000394081 CDK11AQ9UQ88 783 aaPredicted RBP31.73■■■□□ 2.67
RARA-202ENST00000394081 AQRO60306 1485 aaKnown RBP eCLIP31.71■■■□□ 2.674e-7■■■■□ 24.2
RARA-202ENST00000394081 CC2D2AQ9P2K1 1620 aa31.67■■■□□ 2.66
RARA-202ENST00000394081 UACAQ9BZF9 1416 aa31.66■■■□□ 2.66
RARA-202ENST00000394081 EFCAB5A4FU69 1503 aa31.66■■■□□ 2.66
RARA-202ENST00000394081 FGD5Q6ZNL6 1462 aa31.64■■■□□ 2.66
RARA-202ENST00000394081 CASKIN1Q8WXD9 1431 aa31.63■■■□□ 2.65
RARA-202ENST00000394081 HIRIP3Q9BW71 556 aaPredicted RBP31.62■■■□□ 2.65
RARA-202ENST00000394081 CCDC18Q5T9S5 1454 aa31.61■■■□□ 2.65
RARA-202ENST00000394081 HFM1A2PYH4 1435 aa31.61■■■□□ 2.65
RARA-202ENST00000394081 ERICH6Q7L0X2 663 aa31.58■■■□□ 2.65
RARA-202ENST00000394081 FGD6Q6ZV73 1430 aa31.58■■■□□ 2.65
RARA-202ENST00000394081 HNRNPUQ00839 825 aaKnown RBP eCLIP31.55■■■□□ 2.64
RARA-202ENST00000394081 PTPN23Q9H3S7 1636 aa31.54■■■□□ 2.64
RARA-202ENST00000394081 KDM5BQ9UGL1 1544 aa31.52■■■□□ 2.64
RARA-202ENST00000394081 PPP4R2Q9NY27 417 aa31.52■■■□□ 2.64
RARA-202ENST00000394081 NCOA2Q15596 1464 aa31.45■■■□□ 2.63
RARA-202ENST00000394081 FHOD3Q2V2M9 1422 aa31.43■■■□□ 2.62
RARA-202ENST00000394081 FMN1Q68DA7 1419 aa31.42■■■□□ 2.62
RARA-202ENST00000394081 NAIPQ13075 1403 aa31.4■■■□□ 2.62
RARA-202ENST00000394081 PTPRKQ15262 1439 aa31.36■■■□□ 2.61
RARA-202ENST00000394081 CTTNBP2Q8WZ74 1663 aa31.35■■■□□ 2.61
RARA-202ENST00000394081 CADPSQ9ULU8 1353 aa31.35■■■□□ 2.61
RARA-202ENST00000394081 CNTLNQ9NXG0 1405 aa31.35■■■□□ 2.61
RARA-202ENST00000394081 SNAPC4Q5SXM2 1469 aa31.33■■■□□ 2.61
RARA-202ENST00000394081 WASHC2AQ641Q2 1341 aa31.33■■■□□ 2.61
RARA-202ENST00000394081 CUL7Q14999 1698 aa31.33■■■□□ 2.61
RARA-202ENST00000394081 IRX6P78412 446 aaPredicted RBP31.29■■■□□ 2.6
RARA-202ENST00000394081 ATP1B4Q9UN42 357 aaPredicted RBP31.29■■■□□ 2.6
RARA-202ENST00000394081 MYOM3Q5VTT5 1437 aa31.29■■■□□ 2.6
RARA-202ENST00000394081 THOC2Q8NI27 1593 aaKnown RBP31.29■■■□□ 2.6
RARA-202ENST00000394081 P3H3Q8IVL6 736 aa31.28■■■□□ 2.6
RARA-202ENST00000394081 MTUS2Q5JR59 1369 aa31.27■■■□□ 2.6
RARA-202ENST00000394081 HECW1Q76N89 1606 aa31.27■■■□□ 2.6
RARA-202ENST00000394081 ZBED9Q6R2W3 1325 aa31.27■■■□□ 2.6
RARA-202ENST00000394081 HSPA5P11021 654 aaKnown RBP31.26■■■□□ 2.59
RARA-202ENST00000394081 ABCA10Q8WWZ4 1543 aa31.25■■■□□ 2.59
RARA-202ENST00000394081 EIF4G2P78344 907 aaKnown RBP eCLIP31.23■■■□□ 2.591e-6■■■■■ 32.1
RARA-202ENST00000394081 SUPT6HQ7KZ85 1726 aaKnown RBP31.22■■■□□ 2.59
RARA-202ENST00000394081 AKNAQ7Z591 1439 aa31.22■■■□□ 2.59
RARA-202ENST00000394081 GCC2Q8IWJ2 1684 aa31.22■■■□□ 2.59
RARA-202ENST00000394081 EHBP1L1Q8N3D4 1523 aa31.19■■■□□ 2.58
RARA-202ENST00000394081 NCOA1Q15788 1441 aa31.19■■■□□ 2.58
RARA-202ENST00000394081 PRKRIP1Q9H875 184 aaPredicted RBP31.16■■■□□ 2.58
RARA-202ENST00000394081 SAMD9Q5K651 1589 aa31.16■■■□□ 2.58
RARA-202ENST00000394081 DEKP35659 375 aaKnown RBP31.14■■■□□ 2.58
RARA-202ENST00000394081 DNMBPQ6XZF7 1577 aa31.14■■■□□ 2.58
RARA-202ENST00000394081 ARHGEF11O15085 1522 aa31.14■■■□□ 2.58
RARA-202ENST00000394081 GRIN2BQ13224 1484 aa31.13■■■□□ 2.57
RARA-202ENST00000394081 TCOF1Q13428 1488 aaKnown RBP31.12■■■□□ 2.57
RARA-202ENST00000394081 CCDC7Q96M83 1385 aa31.12■■■□□ 2.57
RARA-202ENST00000394081 LRRIQ1Q96JM4 1722 aa31.12■■■□□ 2.57
RARA-202ENST00000394081 ABCA5Q8WWZ7 1642 aa31.11■■■□□ 2.57
RARA-202ENST00000394081 NOP58Q9Y2X3 529 aaKnown RBP31.11■■■□□ 2.57
RARA-202ENST00000394081 UGGT2Q9NYU1 1516 aa31.11■■■□□ 2.57
RARA-202ENST00000394081 POLR1AO95602 1720 aaPredicted RBP31.1■■■□□ 2.57
RARA-202ENST00000394081 DENND4BO75064 1496 aaPredicted RBP31.1■■■□□ 2.57
RARA-202ENST00000394081 KIF21AQ7Z4S6 1674 aa31.06■■■□□ 2.56
RARA-202ENST00000394081 B4GALNT3Q6L9W6 998 aa31.06■■■□□ 2.56
RARA-202ENST00000394081 CCDC184Q52MB2 194 aa31.05■■■□□ 2.56
RARA-202ENST00000394081 MRS2Q9HD23 443 aa31.04■■■□□ 2.56
RARA-202ENST00000394081 SMG6Q86US8 1419 aaKnown RBP31.03■■■□□ 2.56
RARA-202ENST00000394081 FANCD2Q9BXW9 1451 aa31.02■■■□□ 2.56
RARA-202ENST00000394081 POLA1P09884 1462 aaPredicted RBP31■■■□□ 2.55
RARA-202ENST00000394081 FAM9BQ8IZU0 186 aa30.98■■■□□ 2.55
RARA-202ENST00000394081 RNF123Q5XPI4 1314 aa30.97■■■□□ 2.55
RARA-202ENST00000394081 RAD54L2Q9Y4B4 1467 aa30.97■■■□□ 2.55
RARA-202ENST00000394081 TOPBP1Q92547 1522 aa30.95■■■□□ 2.55
RARA-202ENST00000394081 SPATA31E1Q6ZUB1 1445 aa30.93■■■□□ 2.54
RARA-202ENST00000394081 L3MBTL2Q969R5 705 aa30.91■■■□□ 2.54
RARA-202ENST00000394081 C11orf95C9JLR9 678 aaPredicted RBP30.91■■■□□ 2.54
RARA-202ENST00000394081 MIA2Q96PC5 1412 aa30.9■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms