RNA–Protein interactions for RNA: ENST00000393118.6

CALD1-203, Transcript of caldesmon 1, humanhuman

TSL 1 (best) BASIC

Gene CALD1, Length 4,281 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-203ENST00000393118 RRP7BPQ9NSQ0 103 aa14.85□□□□□ -0.03
CALD1-203ENST00000393118 ZNF777Q9ULD5 760 aaPredicted RBP14.85□□□□□ -0.03
CALD1-203ENST00000393118 ANP32EQ9BTT0 268 aa14.84□□□□□ -0.03
CALD1-203ENST00000393118 ZNF326Q5BKZ1 582 aaKnown RBP14.83□□□□□ -0.04
CALD1-203ENST00000393118 CLSPNQ9HAW4 1339 aa14.83□□□□□ -0.04
CALD1-203ENST00000393118 TOP2BQ02880 1626 aa14.83□□□□□ -0.04
CALD1-203ENST00000393118 CUX1P39880 1505 aa14.83□□□□□ -0.04
CALD1-203ENST00000393118 CFTRP13569 1480 aa14.83□□□□□ -0.04
CALD1-203ENST00000393118 ARAP1Q96P48 1450 aa14.82□□□□□ -0.04
CALD1-203ENST00000393118 FHAD1B1AJZ9 1412 aa14.82□□□□□ -0.04
CALD1-203ENST00000393118 FHOD3Q2V2M9 1422 aa14.81□□□□□ -0.04
CALD1-203ENST00000393118 FGD5Q6ZNL6 1462 aa14.81□□□□□ -0.04
CALD1-203ENST00000393118 DHX57Q6P158 1386 aaKnown RBP14.81□□□□□ -0.04
CALD1-203ENST00000393118 RAB3GAP2Q9H2M9 1393 aa14.81□□□□□ -0.04
CALD1-203ENST00000393118 PRXQ9BXM0 1461 aa14.81□□□□□ -0.04
CALD1-203ENST00000393118 FANCD2Q9BXW9 1451 aa14.8□□□□□ -0.04
CALD1-203ENST00000393118 RAD54L2Q9Y4B4 1467 aa14.77□□□□□ -0.04
CALD1-203ENST00000393118 HMGXB3Q12766 1538 aa14.75□□□□□ -0.05
CALD1-203ENST00000393118 SETD5Q9C0A6 1442 aa14.75□□□□□ -0.05
CALD1-203ENST00000393118 CDK11AQ9UQ88 783 aaPredicted RBP14.74□□□□□ -0.05
CALD1-203ENST00000393118 ARHGAP35Q9NRY4 1499 aa14.74□□□□□ -0.05
CALD1-203ENST00000393118 ERICH3Q5RHP9 1530 aa14.72□□□□□ -0.05
CALD1-203ENST00000393118 CHMP7Q8WUX9 453 aaPredicted RBP14.71□□□□□ -0.05
CALD1-203ENST00000393118 NESP48681 1621 aa14.7□□□□□ -0.06
CALD1-203ENST00000393118 MYT1LQ9UL68 1186 aa14.69□□□□□ -0.06
CALD1-203ENST00000393118 PDS5BQ9NTI5 1447 aa14.67□□□□□ -0.06
CALD1-203ENST00000393118 PHLDB1Q86UU1 1377 aa14.66□□□□□ -0.06
CALD1-203ENST00000393118 FKBP8Q14318 412 aa14.66□□□□□ -0.06
CALD1-203ENST00000393118 DNAJC5BQ9UF47 199 aa14.65□□□□□ -0.06
CALD1-203ENST00000393118 FMN1Q68DA7 1419 aa14.64□□□□□ -0.07
CALD1-203ENST00000393118 CC2D2AQ9P2K1 1620 aa14.63□□□□□ -0.07
CALD1-203ENST00000393118 SLC4A1APQ9BWU0 796 aaKnown RBP14.62□□□□□ -0.07
CALD1-203ENST00000393118 HNRNPUQ00839 825 aaKnown RBP eCLIP14.61□□□□□ -0.07
CALD1-203ENST00000393118 KCNH8Q96L42 1107 aa14.61□□□□□ -0.07
CALD1-203ENST00000393118 FOXD1Q16676 465 aa14.6□□□□□ -0.07
CALD1-203ENST00000393118 RRBP1Q9P2E9 1410 aaKnown RBP14.6□□□□□ -0.07
CALD1-203ENST00000393118 LRRC9Q6ZRR7 1453 aa14.59□□□□□ -0.07
CALD1-203ENST00000393118 BIVM-ERCC5R4GMW8 1640 aa14.58□□□□□ -0.08
CALD1-203ENST00000393118 PRKCSHP14314 528 aaPredicted RBP14.57□□□□□ -0.08
CALD1-203ENST00000393118 FAM9BQ8IZU0 186 aa14.57□□□□□ -0.08
CALD1-203ENST00000393118 CFDP1Q9UEE9 299 aaPredicted RBP14.57□□□□□ -0.08
CALD1-203ENST00000393118 PPP1R15AO75807 674 aaPredicted RBP14.56□□□□□ -0.08
CALD1-203ENST00000393118 POLA1P09884 1462 aaPredicted RBP14.56□□□□□ -0.08
CALD1-203ENST00000393118 EIF4G2P78344 907 aaKnown RBP eCLIP14.56□□□□□ -0.08
CALD1-203ENST00000393118 GAPVD1Q14C86 1478 aa14.55□□□□□ -0.08
CALD1-203ENST00000393118 TOPBP1Q92547 1522 aa14.54□□□□□ -0.08
CALD1-203ENST00000393118 KDM2AQ9Y2K7 1162 aa14.53□□□□□ -0.08
CALD1-203ENST00000393118 ERCC6Q03468 1493 aa14.53□□□□□ -0.08
CALD1-203ENST00000393118 TIMELESSQ9UNS1 1208 aa14.52□□□□□ -0.09
CALD1-203ENST00000393118 SUPT16HQ9Y5B9 1047 aaKnown RBP14.51□□□□□ -0.09
CALD1-203ENST00000393118 IRX6P78412 446 aaPredicted RBP14.51□□□□□ -0.09
CALD1-203ENST00000393118 PLEKHD1A6NEE1 506 aa14.5□□□□□ -0.09
CALD1-203ENST00000393118 TSPY4P0CV99 314 aa14.5□□□□□ -0.09
CALD1-203ENST00000393118 TSPY10P0CW01 314 aa14.5□□□□□ -0.09
CALD1-203ENST00000393118 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.5□□□□□ -0.094e-7■■■■□ 20
CALD1-203ENST00000393118 AQRO60306 1485 aaKnown RBP eCLIP14.49□□□□□ -0.095e-16■■□□□ 11.9
CALD1-203ENST00000393118 SENP3-EIF4A1A0A087X0R7 540 aa14.49□□□□□ -0.09
CALD1-203ENST00000393118 MRS2Q9HD23 443 aa14.48□□□□□ -0.09
CALD1-203ENST00000393118 TIAM1Q13009 1591 aa14.48□□□□□ -0.09
CALD1-203ENST00000393118 FGD6Q6ZV73 1430 aa14.47□□□□□ -0.09
CALD1-203ENST00000393118 MPHOSPH9Q99550 1183 aa14.46□□□□□ -0.09
CALD1-203ENST00000393118 CASKIN1Q8WXD9 1431 aa14.46□□□□□ -0.09
CALD1-203ENST00000393118 RTL5Q5HYW3 569 aaPredicted RBP14.45□□□□□ -0.1
CALD1-203ENST00000393118 HSPA5P11021 654 aaKnown RBP14.45□□□□□ -0.1
CALD1-203ENST00000393118 TSHZ2Q9NRE2 1034 aa14.44□□□□□ -0.1
CALD1-203ENST00000393118 CCDC18Q5T9S5 1454 aa14.43□□□□□ -0.1
CALD1-203ENST00000393118 DNMBPQ6XZF7 1577 aa14.43□□□□□ -0.1
CALD1-203ENST00000393118 EIF5BO60841 1220 aaKnown RBP14.42□□□□□ -0.1
CALD1-203ENST00000393118 ABCA10Q8WWZ4 1543 aa14.42□□□□□ -0.1
CALD1-203ENST00000393118 L3MBTL2Q969R5 705 aa14.41□□□□□ -0.1
CALD1-203ENST00000393118 FYCO1Q9BQS8 1478 aa14.41□□□□□ -0.1
CALD1-203ENST00000393118 RGL3Q3MIN7 710 aa14.4□□□□□ -0.1
CALD1-203ENST00000393118 ZNF644Q9H582 1327 aaPredicted RBP14.4□□□□□ -0.1
CALD1-203ENST00000393118 PCF11O94913 1555 aaKnown RBP14.39□□□□□ -0.11
CALD1-203ENST00000393118 SALL2Q9Y467 1007 aaPredicted RBP14.39□□□□□ -0.11
CALD1-203ENST00000393118 NCOA2Q15596 1464 aa14.39□□□□□ -0.11
CALD1-203ENST00000393118 MYOM3Q5VTT5 1437 aa14.38□□□□□ -0.11
CALD1-203ENST00000393118 NBR1Q14596 966 aa14.37□□□□□ -0.11
CALD1-203ENST00000393118 PKD2Q13563 968 aa14.35□□□□□ -0.11
CALD1-203ENST00000393118 JPH4Q96JJ6 628 aa14.35□□□□□ -0.11
CALD1-203ENST00000393118 URB2Q14146 1524 aaKnown RBP14.35□□□□□ -0.11
CALD1-203ENST00000393118 CCER2I3L3R5 266 aa14.35□□□□□ -0.11
CALD1-203ENST00000393118 EFCAB5A4FU69 1503 aa14.34□□□□□ -0.11
CALD1-203ENST00000393118 TMC1Q8TDI8 760 aa14.34□□□□□ -0.11
CALD1-203ENST00000393118 CARD11Q9BXL7 1154 aa14.32□□□□□ -0.12
CALD1-203ENST00000393118 UACAQ9BZF9 1416 aa14.32□□□□□ -0.12
CALD1-203ENST00000393118 WDR97A6NE52 1622 aa14.31□□□□□ -0.12
CALD1-203ENST00000393118 RTN4Q9NQC3 1192 aaKnown RBP14.29□□□□□ -0.12
CALD1-203ENST00000393118 CARMIL2Q6F5E8 1435 aa14.29□□□□□ -0.12
CALD1-203ENST00000393118 DCAF11Q8TEB1 546 aa14.29□□□□□ -0.12
CALD1-203ENST00000393118 HNRNPMP52272 730 aaKnown RBP eCLIP14.28□□□□□ -0.12
CALD1-203ENST00000393118 MAP3K1Q13233 1512 aa14.28□□□□□ -0.12
CALD1-203ENST00000393118 LAMC3Q9Y6N6 1575 aa14.26□□□□□ -0.13
CALD1-203ENST00000393118 GRIN2BQ13224 1484 aa14.26□□□□□ -0.13
CALD1-203ENST00000393118 NUP155O75694 1391 aa14.26□□□□□ -0.13
CALD1-203ENST00000393118 HFM1A2PYH4 1435 aa14.25□□□□□ -0.13
CALD1-203ENST00000393118 RBM19Q9Y4C8 960 aaKnown RBP14.25□□□□□ -0.13
CALD1-203ENST00000393118 NAIPQ13075 1403 aa14.24□□□□□ -0.13
CALD1-203ENST00000393118 CDK13Q14004 1512 aaKnown RBP14.24□□□□□ -0.13
CALD1-203ENST00000393118 CHGAP10645 457 aaKnown RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms