RNA–Protein interactions for RNA: ENST00000379996.7

CDKL5-202, Transcript of cyclin dependent kinase like 5, humanhuman

TSL 1 (best) BASIC

Gene CDKL5, Length 3,449 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-202ENST00000379996 MAGI1Q96QZ7 1491 aaPredicted RBP12.56□□□□□ -0.4
CDKL5-202ENST00000379996 IGF1RP08069 1367 aa12.55□□□□□ -0.4
CDKL5-202ENST00000379996 FOXD4L1Q9NU39 408 aa12.53□□□□□ -0.4
CDKL5-202ENST00000379996 AQRO60306 1485 aaKnown RBP eCLIP12.51□□□□□ -0.41
CDKL5-202ENST00000379996 FHAD1B1AJZ9 1412 aa12.5□□□□□ -0.41
CDKL5-202ENST00000379996 TDRD9Q8NDG6 1382 aaKnown RBP12.5□□□□□ -0.41
CDKL5-202ENST00000379996 LOC105371045A0A1W2PR82 267 aa12.49□□□□□ -0.41
CDKL5-202ENST00000379996 RAPGEF2Q9Y4G8 1499 aa12.48□□□□□ -0.41
CDKL5-202ENST00000379996 SYNJ2O15056 1496 aa12.47□□□□□ -0.41
CDKL5-202ENST00000379996 GOLGA3Q08378 1498 aa12.47□□□□□ -0.41
CDKL5-202ENST00000379996 SNAPC4Q5SXM2 1469 aa12.47□□□□□ -0.41
CDKL5-202ENST00000379996 CTTNBP2Q8WZ74 1663 aa12.46□□□□□ -0.41
CDKL5-202ENST00000379996 CARMIL1Q5VZK9 1371 aa12.45□□□□□ -0.42
CDKL5-202ENST00000379996 GRIN2AQ12879 1464 aa12.42□□□□□ -0.42
CDKL5-202ENST00000379996 FKBP8Q14318 412 aa12.42□□□□□ -0.42
CDKL5-202ENST00000379996 CHD1O14646 1710 aa12.42□□□□□ -0.42
CDKL5-202ENST00000379996 SCAF1Q9H7N4 1312 aaKnown RBP12.41□□□□□ -0.42
CDKL5-202ENST00000379996 NUP160Q12769 1436 aa12.4□□□□□ -0.42
CDKL5-202ENST00000379996 PCGF6Q9BYE7 350 aa12.39□□□□□ -0.43
CDKL5-202ENST00000379996 TNIKQ9UKE5 1360 aa12.38□□□□□ -0.43
CDKL5-202ENST00000379996 CEP170Q5SW79 1584 aa12.37□□□□□ -0.43
CDKL5-202ENST00000379996 SHROOM2Q13796 1616 aa12.35□□□□□ -0.43
CDKL5-202ENST00000379996 CLASP1Q7Z460 1538 aa12.35□□□□□ -0.43
CDKL5-202ENST00000379996 KIAA0586Q9BVV6 1533 aa12.33□□□□□ -0.43
CDKL5-202ENST00000379996 IQGAP2Q13576 1575 aa12.33□□□□□ -0.44
CDKL5-202ENST00000379996 SAMD9Q5K651 1589 aa12.33□□□□□ -0.44
CDKL5-202ENST00000379996 EFCAB5A4FU69 1503 aa12.32□□□□□ -0.44
CDKL5-202ENST00000379996 UGGT2Q9NYU1 1516 aa12.32□□□□□ -0.44
CDKL5-202ENST00000379996 TRIM26Q12899 539 aaPredicted RBP12.29□□□□□ -0.44
CDKL5-202ENST00000379996 FAM9AQ8IZU1 332 aaPredicted RBP12.29□□□□□ -0.44
CDKL5-202ENST00000379996 SLC4A2P04920 1241 aa12.25□□□□□ -0.45
CDKL5-202ENST00000379996 CHMP7Q8WUX9 453 aaPredicted RBP12.24□□□□□ -0.45
CDKL5-202ENST00000379996 KIAA0556O60303 1618 aa12.23□□□□□ -0.45
CDKL5-202ENST00000379996 CEP162Q5TB80 1403 aa12.23□□□□□ -0.45
CDKL5-202ENST00000379996 PPARGC1BQ86YN6 1023 aaKnown RBP12.21□□□□□ -0.45
CDKL5-202ENST00000379996 ARHGAP35Q9NRY4 1499 aa12.21□□□□□ -0.46
CDKL5-202ENST00000379996 DISP1Q96F81 1524 aa12.2□□□□□ -0.46
CDKL5-202ENST00000379996 AMER1Q5JTC6 1135 aaPredicted RBP12.18□□□□□ -0.46
CDKL5-202ENST00000379996 CLIP1P30622 1438 aa12.18□□□□□ -0.46
CDKL5-202ENST00000379996 ARAP1Q96P48 1450 aa12.18□□□□□ -0.46
CDKL5-202ENST00000379996 UBTFP17480 764 aaKnown RBP12.17□□□□□ -0.46
CDKL5-202ENST00000379996 DCAF8L1A6NGE4 600 aa12.14□□□□□ -0.47
CDKL5-202ENST00000379996 CARMIL2Q6F5E8 1435 aa12.13□□□□□ -0.47
CDKL5-202ENST00000379996 OSCARQ8IYS5 282 aa12.12□□□□□ -0.47
CDKL5-202ENST00000379996 VPS8Q8N3P4 1428 aa12.11□□□□□ -0.47
CDKL5-202ENST00000379996 MAP3K1Q13233 1512 aa12.11□□□□□ -0.47
CDKL5-202ENST00000379996 FMN1Q68DA7 1419 aa12.1□□□□□ -0.47
CDKL5-202ENST00000379996 RNF216Q9NWF9 866 aaPredicted RBP12.1□□□□□ -0.47
CDKL5-202ENST00000379996 MSH5O43196 834 aa12.1□□□□□ -0.47
CDKL5-202ENST00000379996 FBLN2P98095 1184 aa12.09□□□□□ -0.47
CDKL5-202ENST00000379996 JPH4Q96JJ6 628 aa12.09□□□□□ -0.47
CDKL5-202ENST00000379996 PRG4Q92954 1404 aaPredicted RBP12.09□□□□□ -0.47
CDKL5-202ENST00000379996 FYCO1Q9BQS8 1478 aa12.09□□□□□ -0.47
CDKL5-202ENST00000379996 ABCA8O94911 1581 aa12.09□□□□□ -0.47
CDKL5-202ENST00000379996 CASKIN1Q8WXD9 1431 aa12.07□□□□□ -0.48
CDKL5-202ENST00000379996 CFAP43Q8NDM7 1665 aa12.07□□□□□ -0.48
CDKL5-202ENST00000379996 HECW1Q76N89 1606 aa12.07□□□□□ -0.48
CDKL5-202ENST00000379996 RAPGEF6Q8TEU7 1601 aa12.07□□□□□ -0.48
CDKL5-202ENST00000379996 UHRF1BP1LA0JNW5 1464 aa12.07□□□□□ -0.48
CDKL5-202ENST00000379996 PCF11O94913 1555 aaKnown RBP12.06□□□□□ -0.48
CDKL5-202ENST00000379996 ERCC6L2Q5T890 1561 aa12.06□□□□□ -0.48
CDKL5-202ENST00000379996 FHOD3Q2V2M9 1422 aa12.05□□□□□ -0.48
CDKL5-202ENST00000379996 LRRIQ1Q96JM4 1722 aa12.05□□□□□ -0.48
CDKL5-202ENST00000379996 ARHGEF11O15085 1522 aa12.03□□□□□ -0.48
CDKL5-202ENST00000379996 ATF5Q9Y2D1 282 aaPredicted RBP12.02□□□□□ -0.48
CDKL5-202ENST00000379996 RIMBP3CA6NJZ7 1639 aa12.02□□□□□ -0.48
CDKL5-202ENST00000379996 RIMBP3BA6NNM3 1639 aa12.02□□□□□ -0.48
CDKL5-202ENST00000379996 RIMBP3Q9UFD9 1639 aa12.02□□□□□ -0.48
CDKL5-202ENST00000379996 CCDC18Q5T9S5 1454 aa12.02□□□□□ -0.48
CDKL5-202ENST00000379996 ABCC2Q92887 1545 aa12.01□□□□□ -0.49
CDKL5-202ENST00000379996 TIAM1Q13009 1591 aa11.99□□□□□ -0.49
CDKL5-202ENST00000379996 PTPRGP23470 1445 aa11.98□□□□□ -0.49
CDKL5-202ENST00000379996 NUP153P49790 1475 aaKnown RBP11.98□□□□□ -0.49
CDKL5-202ENST00000379996 ZEB1P37275 1124 aaPredicted RBP11.98□□□□□ -0.49
CDKL5-202ENST00000379996 UACAQ9BZF9 1416 aa11.97□□□□□ -0.49
CDKL5-202ENST00000379996 ADCY10Q96PN6 1610 aa11.97□□□□□ -0.49
CDKL5-202ENST00000379996 KDM5BQ9UGL1 1544 aa11.96□□□□□ -0.5
CDKL5-202ENST00000379996 EPRSP07814 1512 aaKnown RBP11.95□□□□□ -0.5
CDKL5-202ENST00000379996 PLB1Q6P1J6 1458 aa11.94□□□□□ -0.5
CDKL5-202ENST00000379996 ZCCHC11Q5TAX3 1644 aaKnown RBP11.93□□□□□ -0.5
CDKL5-202ENST00000379996 EHBP1L1Q8N3D4 1523 aa11.92□□□□□ -0.5
CDKL5-202ENST00000379996 ATP10BO94823 1461 aa11.89□□□□□ -0.51
CDKL5-202ENST00000379996 LRRC9Q6ZRR7 1453 aa11.89□□□□□ -0.51
CDKL5-202ENST00000379996 MAPKBP1O60336 1514 aa11.88□□□□□ -0.51
CDKL5-202ENST00000379996 P3H3Q8IVL6 736 aa11.88□□□□□ -0.51
CDKL5-202ENST00000379996 MYCNP04198 464 aaPredicted RBP11.87□□□□□ -0.51
CDKL5-202ENST00000379996 MAGI3Q5TCQ9 1506 aa11.87□□□□□ -0.51
CDKL5-202ENST00000379996 SUPT6HQ7KZ85 1726 aaKnown RBP11.87□□□□□ -0.51
CDKL5-202ENST00000379996 DMRT2Q9Y5R5 561 aa11.86□□□□□ -0.51
CDKL5-202ENST00000379996 CDK13Q14004 1512 aaKnown RBP11.86□□□□□ -0.51
CDKL5-202ENST00000379996 RANGAP1P46060 587 aaPredicted RBP11.85□□□□□ -0.51
CDKL5-202ENST00000379996 TROQ12816 1431 aaPredicted RBP11.83□□□□□ -0.51
CDKL5-202ENST00000379996 KIF14Q15058 1648 aa11.83□□□□□ -0.52
CDKL5-202ENST00000379996 HOXD11P31277 338 aaPredicted RBP11.82□□□□□ -0.52
CDKL5-202ENST00000379996 GLI2P10070 1586 aa11.81□□□□□ -0.52
CDKL5-202ENST00000379996 ARAP3Q8WWN8 1544 aa11.81□□□□□ -0.52
CDKL5-202ENST00000379996 ITSN2Q9NZM3 1697 aa11.81□□□□□ -0.52
CDKL5-202ENST00000379996 ABCA9Q8IUA7 1624 aa11.8□□□□□ -0.52
CDKL5-202ENST00000379996 ABCC10Q5T3U5 1492 aa11.8□□□□□ -0.52
CDKL5-202ENST00000379996 WDR7Q9Y4E6 1490 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms