RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 JPH4Q96JJ6 628 aa31.04■■■□□ 2.56
SSU72-203ENST00000378725 RIMBP3CA6NJZ7 1639 aa30.99■■■□□ 2.55
SSU72-203ENST00000378725 RIMBP3BA6NNM3 1639 aa30.99■■■□□ 2.55
SSU72-203ENST00000378725 SHROOM2Q13796 1616 aa30.99■■■□□ 2.55
SSU72-203ENST00000378725 RIMBP3Q9UFD9 1639 aa30.99■■■□□ 2.55
SSU72-203ENST00000378725 KIF21BO75037 1637 aa30.93■■■□□ 2.54
SSU72-203ENST00000378725 PRG4Q92954 1404 aaPredicted RBP30.9■■■□□ 2.54
SSU72-203ENST00000378725 IQGAP2Q13576 1575 aa30.89■■■□□ 2.54
SSU72-203ENST00000378725 ERCC6L2Q5T890 1561 aa30.86■■■□□ 2.53
SSU72-203ENST00000378725 ARAP1Q96P48 1450 aa30.83■■■□□ 2.53
SSU72-203ENST00000378725 CTTNBP2Q8WZ74 1663 aa30.81■■■□□ 2.52
SSU72-203ENST00000378725 CYB5RLQ6IPT4 315 aa30.8■■■□□ 2.52
SSU72-203ENST00000378725 GOLGA3Q08378 1498 aa30.79■■■□□ 2.52
SSU72-203ENST00000378725 UGGT2Q9NYU1 1516 aa30.78■■■□□ 2.52
SSU72-203ENST00000378725 CARMIL2Q6F5E8 1435 aa30.73■■■□□ 2.51
SSU72-203ENST00000378725 UBTFP17480 764 aaKnown RBP30.71■■■□□ 2.51
SSU72-203ENST00000378725 EHMT2Q96KQ7 1210 aa30.71■■■□□ 2.51
SSU72-203ENST00000378725 DISP1Q96F81 1524 aa30.71■■■□□ 2.51
SSU72-203ENST00000378725 TNIKQ9UKE5 1360 aa30.64■■■□□ 2.5
SSU72-203ENST00000378725 KIAA0556O60303 1618 aa30.59■■■□□ 2.49
SSU72-203ENST00000378725 PTPRGP23470 1445 aa30.59■■■□□ 2.49
SSU72-203ENST00000378725 SAMD9Q5K651 1589 aa30.5■■■□□ 2.47
SSU72-203ENST00000378725 RANGAP1P46060 587 aaPredicted RBP30.5■■■□□ 2.47
SSU72-203ENST00000378725 P3H3Q8IVL6 736 aa30.47■■■□□ 2.47
SSU72-203ENST00000378725 TTBK1Q5TCY1 1321 aaPredicted RBP30.47■■■□□ 2.47
SSU72-203ENST00000378725 LOC105371045A0A1W2PR82 267 aa30.43■■■□□ 2.46
SSU72-203ENST00000378725 EFCAB5A4FU69 1503 aa30.42■■■□□ 2.46
SSU72-203ENST00000378725 UACAQ9BZF9 1416 aa30.39■■■□□ 2.46
SSU72-203ENST00000378725 UHRF1BP1LA0JNW5 1464 aa30.36■■■□□ 2.45
SSU72-203ENST00000378725 FHOD3Q2V2M9 1422 aa30.35■■■□□ 2.45
SSU72-203ENST00000378725 ARHGAP35Q9NRY4 1499 aa30.35■■■□□ 2.45
SSU72-203ENST00000378725 ADCY10Q96PN6 1610 aa30.35■■■□□ 2.45
SSU72-203ENST00000378725 PLB1Q6P1J6 1458 aa30.31■■■□□ 2.44
SSU72-203ENST00000378725 ABCC2Q92887 1545 aa30.29■■■□□ 2.44
SSU72-203ENST00000378725 NPM1P06748 294 aaKnown RBP eCLIP30.29■■■□□ 2.44
SSU72-203ENST00000378725 ABCA8O94911 1581 aa30.28■■■□□ 2.44
SSU72-203ENST00000378725 CLIP1P30622 1438 aa30.25■■■□□ 2.43
SSU72-203ENST00000378725 KDM5BQ9UGL1 1544 aa30.2■■■□□ 2.42
SSU72-203ENST00000378725 CEP162Q5TB80 1403 aa30.18■■■□□ 2.42
SSU72-203ENST00000378725 FMN1Q68DA7 1419 aa30.17■■■□□ 2.42
SSU72-203ENST00000378725 RAPGEF6Q8TEU7 1601 aa30.14■■■□□ 2.41
SSU72-203ENST00000378725 MAPKBP1O60336 1514 aa30.13■■■□□ 2.41
SSU72-203ENST00000378725 ATP10BO94823 1461 aa30.07■■■□□ 2.4
SSU72-203ENST00000378725 NUP153P49790 1475 aaKnown RBP30.07■■■□□ 2.4
SSU72-203ENST00000378725 ZCCHC11Q5TAX3 1644 aaKnown RBP30.06■■■□□ 2.4
SSU72-203ENST00000378725 ASXL2Q76L83 1435 aa30.04■■■□□ 2.4
SSU72-203ENST00000378725 TRHP20396 242 aaPredicted RBP30.03■■■□□ 2.4
SSU72-203ENST00000378725 ARID3CA6NKF2 412 aa30.01■■■□□ 2.39
SSU72-203ENST00000378725 CASKIN1Q8WXD9 1431 aa29.98■■■□□ 2.39
SSU72-203ENST00000378725 ABCC10Q5T3U5 1492 aa29.98■■■□□ 2.39
SSU72-203ENST00000378725 ATP1B4Q9UN42 357 aaPredicted RBP29.95■■■□□ 2.39
SSU72-203ENST00000378725 HECW1Q76N89 1606 aa29.93■■■□□ 2.38
SSU72-203ENST00000378725 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.92■■■□□ 2.38
SSU72-203ENST00000378725 HNRNPUL2Q1KMD3 747 aaKnown RBP29.92■■■□□ 2.38
SSU72-203ENST00000378725 WDR7Q9Y4E6 1490 aa29.92■■■□□ 2.38
SSU72-203ENST00000378725 FAM69CQ0P6D2 419 aa29.91■■■□□ 2.38
SSU72-203ENST00000378725 EPRSP07814 1512 aaKnown RBP29.91■■■□□ 2.38
SSU72-203ENST00000378725 FYCO1Q9BQS8 1478 aa29.89■■■□□ 2.38
SSU72-203ENST00000378725 PCF11O94913 1555 aaKnown RBP29.89■■■□□ 2.38
SSU72-203ENST00000378725 DIP2BQ9P265 1576 aa29.88■■■□□ 2.37
SSU72-203ENST00000378725 PLEKHD1A6NEE1 506 aa29.85■■■□□ 2.37
SSU72-203ENST00000378725 CDK13Q14004 1512 aaKnown RBP29.85■■■□□ 2.37
SSU72-203ENST00000378725 GLI2P10070 1586 aa29.83■■■□□ 2.37
SSU72-203ENST00000378725 KIF13AQ9H1H9 1805 aa29.82■■■□□ 2.36
SSU72-203ENST00000378725 VPS8Q8N3P4 1428 aa29.81■■■□□ 2.36
SSU72-203ENST00000378725 KCNH8Q96L42 1107 aa29.81■■■□□ 2.36
SSU72-203ENST00000378725 CCDC18Q5T9S5 1454 aa29.8■■■□□ 2.36
SSU72-203ENST00000378725 CDK11AQ9UQ88 783 aaPredicted RBP29.79■■■□□ 2.36
SSU72-203ENST00000378725 LRRIQ1Q96JM4 1722 aa29.77■■■□□ 2.36
SSU72-203ENST00000378725 TROQ12816 1431 aaPredicted RBP29.67■■■□□ 2.34
SSU72-203ENST00000378725 MAP3K4Q9Y6R4 1608 aa29.66■■■□□ 2.34
SSU72-203ENST00000378725 CD109Q6YHK3 1445 aa29.63■■■□□ 2.33
SSU72-203ENST00000378725 ABCA9Q8IUA7 1624 aa29.62■■■□□ 2.33
SSU72-203ENST00000378725 MAGI3Q5TCQ9 1506 aa29.61■■■□□ 2.33
SSU72-203ENST00000378725 CFAP43Q8NDM7 1665 aa29.6■■■□□ 2.33
SSU72-203ENST00000378725 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.58■■■□□ 2.335e-7■■■■□ 21.7
SSU72-203ENST00000378725 MAP3K1Q13233 1512 aa29.55■■■□□ 2.32
SSU72-203ENST00000378725 PPRC1Q5VV67 1664 aaKnown RBP29.55■■■□□ 2.32
SSU72-203ENST00000378725 TSPOAP1O95153 1857 aa29.53■■■□□ 2.32
SSU72-203ENST00000378725 MTUS2Q5JR59 1369 aa29.52■■■□□ 2.32
SSU72-203ENST00000378725 TIAM1Q13009 1591 aa29.52■■■□□ 2.32
SSU72-203ENST00000378725 TEX14Q8IWB6 1497 aa29.52■■■□□ 2.32
SSU72-203ENST00000378725 KIF14Q15058 1648 aa29.51■■■□□ 2.31
SSU72-203ENST00000378725 TTC37Q6PGP7 1564 aa29.48■■■□□ 2.31
SSU72-203ENST00000378725 APLP2Q06481 763 aa29.46■■■□□ 2.31
SSU72-203ENST00000378725 PLCH2O75038 1416 aa29.45■■■□□ 2.31
SSU72-203ENST00000378725 EHBP1L1Q8N3D4 1523 aa29.45■■■□□ 2.3
SSU72-203ENST00000378725 LRRC9Q6ZRR7 1453 aa29.43■■■□□ 2.3
SSU72-203ENST00000378725 KANK4Q5T7N3 995 aaPredicted RBP29.43■■■□□ 2.3
SSU72-203ENST00000378725 PHLDB1Q86UU1 1377 aa29.4■■■□□ 2.3
SSU72-203ENST00000378725 NEO1Q92859 1461 aa29.38■■■□□ 2.29
SSU72-203ENST00000378725 ARAP3Q8WWN8 1544 aa29.38■■■□□ 2.29
SSU72-203ENST00000378725 FANCAO15360 1455 aa29.35■■■□□ 2.29
SSU72-203ENST00000378725 EFCAB2Q5VUJ9 269 aa29.34■■■□□ 2.29
SSU72-203ENST00000378725 COL17A1Q9UMD9 1497 aaPredicted RBP29.34■■■□□ 2.29
SSU72-203ENST00000378725 GPATCH8Q9UKJ3 1502 aaKnown RBP29.33■■■□□ 2.29
SSU72-203ENST00000378725 MYO5CQ9NQX4 1742 aa29.33■■■□□ 2.29
SSU72-203ENST00000378725 AKNAQ7Z591 1439 aa29.31■■■□□ 2.28
SSU72-203ENST00000378725 CCNB3Q8WWL7 1395 aa29.31■■■□□ 2.28
SSU72-203ENST00000378725 KDM6BO15054 1643 aa29.31■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 126.2 ms