RNA–Protein interactions for RNA: ENST00000374516.7

PHF1-202, Transcript of PHD finger protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PHF1, Length 2,330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF1-202ENST00000374516 ABCA5Q8WWZ7 1642 aa25.4■■□□□ 1.66
PHF1-202ENST00000374516 CUL7Q14999 1698 aa25.4■■□□□ 1.66
PHF1-202ENST00000374516 TARBP1Q13395 1621 aaKnown RBP25.37■■□□□ 1.65
PHF1-202ENST00000374516 HNRNPUL2Q1KMD3 747 aaKnown RBP25.36■■□□□ 1.65
PHF1-202ENST00000374516 CENPBP07199 599 aaPredicted RBP25.35■■□□□ 1.65
PHF1-202ENST00000374516 GTF3C3Q9Y5Q9 886 aa25.32■■□□□ 1.64
PHF1-202ENST00000374516 AQRO60306 1485 aaKnown RBP eCLIP25.31■■□□□ 1.648e-8■■■□□ 18.9
PHF1-202ENST00000374516 ERCC6Q03468 1493 aa25.26■■□□□ 1.63
PHF1-202ENST00000374516 FHOD3Q2V2M9 1422 aa25.24■■□□□ 1.63
PHF1-202ENST00000374516 ATP1B4Q9UN42 357 aaPredicted RBP25.24■■□□□ 1.63
PHF1-202ENST00000374516 CTTNBP2Q8WZ74 1663 aa25.21■■□□□ 1.63
PHF1-202ENST00000374516 WDR62O43379 1518 aa25.21■■□□□ 1.63
PHF1-202ENST00000374516 ZNF608Q9ULD9 1512 aaPredicted RBP25.19■■□□□ 1.62
PHF1-202ENST00000374516 FHAD1B1AJZ9 1412 aa25.18■■□□□ 1.62
PHF1-202ENST00000374516 IFT140Q96RY7 1462 aa25.16■■□□□ 1.62
PHF1-202ENST00000374516 PBRM1Q86U86 1689 aa25.15■■□□□ 1.62
PHF1-202ENST00000374516 EFCAB5A4FU69 1503 aa25.14■■□□□ 1.61
PHF1-202ENST00000374516 TIAM1Q13009 1591 aa25.12■■□□□ 1.61
PHF1-202ENST00000374516 ZNF316A6NFI3 1004 aaPredicted RBP25.12■■□□□ 1.61
PHF1-202ENST00000374516 GRIN2BQ13224 1484 aa25.11■■□□□ 1.61
PHF1-202ENST00000374516 PCF11O94913 1555 aaKnown RBP25.11■■□□□ 1.61
PHF1-202ENST00000374516 MAP3K1Q13233 1512 aa25.06■■□□□ 1.6
PHF1-202ENST00000374516 ADAMTS12P58397 1594 aa25.05■■□□□ 1.6
PHF1-202ENST00000374516 LRRC9Q6ZRR7 1453 aa25.05■■□□□ 1.6
PHF1-202ENST00000374516 RRBP1Q9P2E9 1410 aaKnown RBP25.04■■□□□ 1.6
PHF1-202ENST00000374516 THOC2Q8NI27 1593 aaKnown RBP25.03■■□□□ 1.6
PHF1-202ENST00000374516 CASKIN1Q8WXD9 1431 aa25.02■■□□□ 1.6
PHF1-202ENST00000374516 FMN1Q68DA7 1419 aa25.02■■□□□ 1.6
PHF1-202ENST00000374516 CCNB3Q8WWL7 1395 aa25.01■■□□□ 1.59
PHF1-202ENST00000374516 FYCO1Q9BQS8 1478 aa25.01■■□□□ 1.59
PHF1-202ENST00000374516 ITGAEP38570 1179 aa25■■□□□ 1.59
PHF1-202ENST00000374516 SAMD9Q5K651 1589 aa25■■□□□ 1.59
PHF1-202ENST00000374516 MYT1Q01538 1121 aa24.97■■□□□ 1.59
PHF1-202ENST00000374516 SNAPC4Q5SXM2 1469 aa24.97■■□□□ 1.59
PHF1-202ENST00000374516 EIF4G3O43432 1585 aaKnown RBP24.97■■□□□ 1.59
PHF1-202ENST00000374516 PHLDB1Q86UU1 1377 aa24.95■■□□□ 1.58
PHF1-202ENST00000374516 CFAP43Q8NDM7 1665 aa24.94■■□□□ 1.58
PHF1-202ENST00000374516 IQGAP2Q13576 1575 aa24.92■■□□□ 1.58
PHF1-202ENST00000374516 FBLN2P98095 1184 aa24.88■■□□□ 1.57
PHF1-202ENST00000374516 FAM50AQ14320 339 aaKnown RBP24.86■■□□□ 1.57
PHF1-202ENST00000374516 CHMP7Q8WUX9 453 aaPredicted RBP24.86■■□□□ 1.57
PHF1-202ENST00000374516 YTHDC1Q96MU7 727 aaKnown RBP24.85■■□□□ 1.57
PHF1-202ENST00000374516 GRIN2AQ12879 1464 aa24.84■■□□□ 1.57
PHF1-202ENST00000374516 MIER1Q8N108 512 aa24.84■■□□□ 1.57
PHF1-202ENST00000374516 MTUS2Q5JR59 1369 aa24.82■■□□□ 1.56
PHF1-202ENST00000374516 KIAA0586Q9BVV6 1533 aa24.8■■□□□ 1.56
PHF1-202ENST00000374516 LRRIQ1Q96JM4 1722 aa24.79■■□□□ 1.56
PHF1-202ENST00000374516 MAGI1Q96QZ7 1491 aaPredicted RBP24.79■■□□□ 1.56
PHF1-202ENST00000374516 ARID3CA6NKF2 412 aa24.77■■□□□ 1.56
PHF1-202ENST00000374516 UGGT2Q9NYU1 1516 aa24.76■■□□□ 1.55
PHF1-202ENST00000374516 SYNJ2O15056 1496 aa24.75■■□□□ 1.55
PHF1-202ENST00000374516 DHX57Q6P158 1386 aaKnown RBP24.74■■□□□ 1.55
PHF1-202ENST00000374516 DISP1Q96F81 1524 aa24.7■■□□□ 1.55
PHF1-202ENST00000374516 CEP170Q5SW79 1584 aa24.68■■□□□ 1.54
PHF1-202ENST00000374516 RAB3GAP2Q9H2M9 1393 aa24.67■■□□□ 1.54
PHF1-202ENST00000374516 NCOA2Q15596 1464 aa24.65■■□□□ 1.54
PHF1-202ENST00000374516 KIAA0556O60303 1618 aa24.65■■□□□ 1.54
PHF1-202ENST00000374516 MAGI3Q5TCQ9 1506 aa24.65■■□□□ 1.54
PHF1-202ENST00000374516 FGD6Q6ZV73 1430 aa24.65■■□□□ 1.54
PHF1-202ENST00000374516 EPRSP07814 1512 aaKnown RBP24.64■■□□□ 1.54
PHF1-202ENST00000374516 HECW1Q76N89 1606 aa24.64■■□□□ 1.54
PHF1-202ENST00000374516 CCDC18Q5T9S5 1454 aa24.64■■□□□ 1.54
PHF1-202ENST00000374516 CDK13Q14004 1512 aaKnown RBP24.63■■□□□ 1.53
PHF1-202ENST00000374516 JPH4Q96JJ6 628 aa24.61■■□□□ 1.53
PHF1-202ENST00000374516 EHBP1L1Q8N3D4 1523 aa24.6■■□□□ 1.53
PHF1-202ENST00000374516 SETD5Q9C0A6 1442 aa24.6■■□□□ 1.53
PHF1-202ENST00000374516 CLSPNQ9HAW4 1339 aa24.59■■□□□ 1.53
PHF1-202ENST00000374516 NUP160Q12769 1436 aa24.58■■□□□ 1.53
PHF1-202ENST00000374516 SUPT6HQ7KZ85 1726 aaKnown RBP24.58■■□□□ 1.52
PHF1-202ENST00000374516 MYOM3Q5VTT5 1437 aa24.57■■□□□ 1.52
PHF1-202ENST00000374516 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.57■■□□□ 1.522e-15■■■□□ 18.3
PHF1-202ENST00000374516 NUP153P49790 1475 aaKnown RBP24.51■■□□□ 1.51
PHF1-202ENST00000374516 ARHGEF11O15085 1522 aa24.49■■□□□ 1.51
PHF1-202ENST00000374516 PTPRKQ15262 1439 aa24.49■■□□□ 1.51
PHF1-202ENST00000374516 CARMIL2Q6F5E8 1435 aa24.48■■□□□ 1.51
PHF1-202ENST00000374516 PLB1Q6P1J6 1458 aa24.48■■□□□ 1.51
PHF1-202ENST00000374516 RAPGEF6Q8TEU7 1601 aa24.47■■□□□ 1.51
PHF1-202ENST00000374516 PTPN23Q9H3S7 1636 aa24.43■■□□□ 1.5
PHF1-202ENST00000374516 CDK11AQ9UQ88 783 aaPredicted RBP24.41■■□□□ 1.5
PHF1-202ENST00000374516 MAPKBP1O60336 1514 aa24.4■■□□□ 1.5
PHF1-202ENST00000374516 CHIC2Q9UKJ5 165 aa24.39■■□□□ 1.5
PHF1-202ENST00000374516 PRG4Q92954 1404 aaPredicted RBP24.36■■□□□ 1.49
PHF1-202ENST00000374516 HFM1A2PYH4 1435 aa24.34■■□□□ 1.49
PHF1-202ENST00000374516 RRP7BPQ9NSQ0 103 aa24.34■■□□□ 1.49
PHF1-202ENST00000374516 CHD1O14646 1710 aa24.33■■□□□ 1.49
PHF1-202ENST00000374516 TCOF1Q13428 1488 aaKnown RBP24.33■■□□□ 1.49
PHF1-202ENST00000374516 SIN3AQ96ST3 1273 aa24.33■■□□□ 1.49
PHF1-202ENST00000374516 MIA2Q96PC5 1412 aa24.32■■□□□ 1.48
PHF1-202ENST00000374516 NAIPQ13075 1403 aa24.31■■□□□ 1.48
PHF1-202ENST00000374516 ZNF644Q9H582 1327 aaPredicted RBP24.31■■□□□ 1.48
PHF1-202ENST00000374516 TROQ12816 1431 aaPredicted RBP24.28■■□□□ 1.48
PHF1-202ENST00000374516 PTPRGP23470 1445 aa24.26■■□□□ 1.47
PHF1-202ENST00000374516 SUPT16HQ9Y5B9 1047 aaKnown RBP24.26■■□□□ 1.47
PHF1-202ENST00000374516 ABCA8O94911 1581 aa24.24■■□□□ 1.47
PHF1-202ENST00000374516 PLEKHD1A6NEE1 506 aa24.23■■□□□ 1.47
PHF1-202ENST00000374516 ATP10BO94823 1461 aa24.22■■□□□ 1.47
PHF1-202ENST00000374516 CFDP1Q9UEE9 299 aaPredicted RBP24.21■■□□□ 1.47
PHF1-202ENST00000374516 ZNF777Q9ULD5 760 aaPredicted RBP24.19■■□□□ 1.46
PHF1-202ENST00000374516 UACAQ9BZF9 1416 aa24.19■■□□□ 1.46
PHF1-202ENST00000374516 KIF14Q15058 1648 aa24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms