RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 JPH4Q96JJ6 628 aa37.43■■■■□ 3.58
CCDC28B-201ENST00000373602 PRG4Q92954 1404 aaPredicted RBP37.41■■■■□ 3.58
CCDC28B-201ENST00000373602 CARMIL1Q5VZK9 1371 aa37.34■■■■□ 3.57
CCDC28B-201ENST00000373602 KIAA0586Q9BVV6 1533 aa37.31■■■■□ 3.56
CCDC28B-201ENST00000373602 RAPGEF2Q9Y4G8 1499 aa37.05■■■■□ 3.52
CCDC28B-201ENST00000373602 IQGAP2Q13576 1575 aa37■■■■□ 3.51
CCDC28B-201ENST00000373602 CARMIL2Q6F5E8 1435 aa36.93■■■■□ 3.5
CCDC28B-201ENST00000373602 ADCY10Q96PN6 1610 aa36.9■■■■□ 3.5
CCDC28B-201ENST00000373602 PTPRGP23470 1445 aa36.88■■■■□ 3.49
CCDC28B-201ENST00000373602 NPM1P06748 294 aaKnown RBP eCLIP36.88■■■■□ 3.49
CCDC28B-201ENST00000373602 TNIKQ9UKE5 1360 aa36.86■■■■□ 3.49
CCDC28B-201ENST00000373602 DISP1Q96F81 1524 aa36.8■■■■□ 3.48
CCDC28B-201ENST00000373602 UGGT2Q9NYU1 1516 aa36.8■■■■□ 3.48
CCDC28B-201ENST00000373602 MAPKBP1O60336 1514 aa36.8■■■■□ 3.48
CCDC28B-201ENST00000373602 PRXQ9BXM0 1461 aa36.79■■■■□ 3.48
CCDC28B-201ENST00000373602 KIF13AQ9H1H9 1805 aa36.76■■■■□ 3.48
CCDC28B-201ENST00000373602 TTBK1Q5TCY1 1321 aaPredicted RBP36.75■■■■□ 3.47
CCDC28B-201ENST00000373602 ABCC10Q5T3U5 1492 aa36.71■■■■□ 3.47
CCDC28B-201ENST00000373602 CTTNBP2Q8WZ74 1663 aa36.68■■■■□ 3.46
CCDC28B-201ENST00000373602 KIAA0556O60303 1618 aa36.66■■■■□ 3.46
CCDC28B-201ENST00000373602 FAM69CQ0P6D2 419 aa36.65■■■■□ 3.46
CCDC28B-201ENST00000373602 UHRF1BP1LA0JNW5 1464 aa36.63■■■■□ 3.45
CCDC28B-201ENST00000373602 ABCC2Q92887 1545 aa36.63■■■■□ 3.45
CCDC28B-201ENST00000373602 UACAQ9BZF9 1416 aa36.62■■■■□ 3.45
CCDC28B-201ENST00000373602 DIP2BQ9P265 1576 aa36.61■■■■□ 3.45
CCDC28B-201ENST00000373602 CSRNP3Q8WYN3 585 aa36.6■■■■□ 3.45
CCDC28B-201ENST00000373602 EEA1Q15075 1411 aa36.53■■■■□ 3.44
CCDC28B-201ENST00000373602 GOLGA3Q08378 1498 aa36.53■■■■□ 3.44
CCDC28B-201ENST00000373602 KDM5BQ9UGL1 1544 aa36.45■■■■□ 3.43
CCDC28B-201ENST00000373602 ASXL2Q76L83 1435 aa36.45■■■■□ 3.43
CCDC28B-201ENST00000373602 PLB1Q6P1J6 1458 aa36.44■■■■□ 3.42
CCDC28B-201ENST00000373602 ZCCHC11Q5TAX3 1644 aaKnown RBP36.34■■■■□ 3.41
CCDC28B-201ENST00000373602 GLI2P10070 1586 aa36.32■■■■□ 3.41
CCDC28B-201ENST00000373602 FAM9AQ8IZU1 332 aaPredicted RBP36.32■■■■□ 3.4
CCDC28B-201ENST00000373602 ABCA8O94911 1581 aa36.31■■■■□ 3.4
CCDC28B-201ENST00000373602 CHIC1Q5VXU3 224 aa36.3■■■■□ 3.4
CCDC28B-201ENST00000373602 TSPOAP1O95153 1857 aa36.29■■■■□ 3.4
CCDC28B-201ENST00000373602 EPRSP07814 1512 aaKnown RBP36.24■■■■□ 3.39
CCDC28B-201ENST00000373602 P3H3Q8IVL6 736 aa36.22■■■■□ 3.39
CCDC28B-201ENST00000373602 SAMD9Q5K651 1589 aa36.22■■■■□ 3.39
CCDC28B-201ENST00000373602 KIF21BO75037 1637 aa36.19■■■■□ 3.38
CCDC28B-201ENST00000373602 KDM6BO15054 1643 aa36.17■■■■□ 3.38
CCDC28B-201ENST00000373602 WDR7Q9Y4E6 1490 aa36.17■■■■□ 3.38
CCDC28B-201ENST00000373602 PPRC1Q5VV67 1664 aaKnown RBP36.15■■■■□ 3.38
CCDC28B-201ENST00000373602 MAP3K4Q9Y6R4 1608 aa36.11■■■■□ 3.37
CCDC28B-201ENST00000373602 RANGAP1P46060 587 aaPredicted RBP36.04■■■■□ 3.36
CCDC28B-201ENST00000373602 ATP10BO94823 1461 aa36.01■■■■□ 3.36
CCDC28B-201ENST00000373602 AEBP2Q6ZN18 517 aaPredicted RBP36.01■■■■□ 3.36
CCDC28B-201ENST00000373602 TEX14Q8IWB6 1497 aa35.99■■■■□ 3.35
CCDC28B-201ENST00000373602 RAPGEF6Q8TEU7 1601 aa35.98■■■■□ 3.35
CCDC28B-201ENST00000373602 KCNH8Q96L42 1107 aa35.98■■■■□ 3.35
CCDC28B-201ENST00000373602 FHOD3Q2V2M9 1422 aa35.98■■■■□ 3.35
CCDC28B-201ENST00000373602 ARID3CA6NKF2 412 aa35.97■■■■□ 3.35
CCDC28B-201ENST00000373602 EFCAB5A4FU69 1503 aa35.94■■■■□ 3.34
CCDC28B-201ENST00000373602 CFAP43Q8NDM7 1665 aa35.91■■■■□ 3.34
CCDC28B-201ENST00000373602 CD109Q6YHK3 1445 aa35.91■■■■□ 3.34
CCDC28B-201ENST00000373602 COL17A1Q9UMD9 1497 aaPredicted RBP35.9■■■■□ 3.34
CCDC28B-201ENST00000373602 UBTFP17480 764 aaKnown RBP35.89■■■■□ 3.34
CCDC28B-201ENST00000373602 MAGI3Q5TCQ9 1506 aa35.88■■■■□ 3.33
CCDC28B-201ENST00000373602 NUP153P49790 1475 aaKnown RBP35.87■■■■□ 3.33
CCDC28B-201ENST00000373602 EHMT2Q96KQ7 1210 aa35.87■■■■□ 3.33
CCDC28B-201ENST00000373602 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.79■■■■□ 3.32
CCDC28B-201ENST00000373602 HNRNPUL2Q1KMD3 747 aaKnown RBP35.79■■■■□ 3.32
CCDC28B-201ENST00000373602 ABCA9Q8IUA7 1624 aa35.73■■■■□ 3.31
CCDC28B-201ENST00000373602 ARHGAP35Q9NRY4 1499 aa35.69■■■■□ 3.3
CCDC28B-201ENST00000373602 KDM4FA0A1W2PPD8 638 aa35.66■■■■□ 3.3
CCDC28B-201ENST00000373602 PLEKHD1A6NEE1 506 aa35.65■■■■□ 3.3
CCDC28B-201ENST00000373602 FMN1Q68DA7 1419 aa35.63■■■■□ 3.29
CCDC28B-201ENST00000373602 ARAP3Q8WWN8 1544 aa35.59■■■■□ 3.29
CCDC28B-201ENST00000373602 PHLDB1Q86UU1 1377 aa35.58■■■■□ 3.29
CCDC28B-201ENST00000373602 CDK13Q14004 1512 aaKnown RBP35.54■■■■□ 3.28
CCDC28B-201ENST00000373602 NEO1Q92859 1461 aa35.52■■■■□ 3.28
CCDC28B-201ENST00000373602 HECW1Q76N89 1606 aa35.5■■■■□ 3.27
CCDC28B-201ENST00000373602 ATP1B4Q9UN42 357 aaPredicted RBP35.47■■■■□ 3.27
CCDC28B-201ENST00000373602 ADGRL1O94910 1474 aa35.46■■■■□ 3.27
CCDC28B-201ENST00000373602 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.46■■■■□ 3.271e-6■■■■■ 42.9
CCDC28B-201ENST00000373602 TTC37Q6PGP7 1564 aa35.38■■■■□ 3.25
CCDC28B-201ENST00000373602 RAPGEF3O95398 923 aa35.37■■■■□ 3.25
CCDC28B-201ENST00000373602 CDK11AQ9UQ88 783 aaPredicted RBP35.36■■■■□ 3.25
CCDC28B-201ENST00000373602 FANCAO15360 1455 aa35.33■■■■□ 3.25
CCDC28B-201ENST00000373602 AKNAQ7Z591 1439 aa35.32■■■■□ 3.24
CCDC28B-201ENST00000373602 CFAP74Q9C0B2 1584 aa35.3■■■■□ 3.24
CCDC28B-201ENST00000373602 FRMPD1Q5SYB0 1578 aa35.3■■■■□ 3.24
CCDC28B-201ENST00000373602 CASKIN1Q8WXD9 1431 aa35.29■■■■□ 3.24
CCDC28B-201ENST00000373602 LRRIQ1Q96JM4 1722 aa35.28■■■■□ 3.24
CCDC28B-201ENST00000373602 CLIP1P30622 1438 aa35.27■■■■□ 3.24
CCDC28B-201ENST00000373602 PLCH2O75038 1416 aa35.26■■■■□ 3.24
CCDC28B-201ENST00000373602 TROQ12816 1431 aaPredicted RBP35.26■■■■□ 3.24
CCDC28B-201ENST00000373602 PCF11O94913 1555 aaKnown RBP35.25■■■■□ 3.23
CCDC28B-201ENST00000373602 DENND4BO75064 1496 aaPredicted RBP35.25■■■■□ 3.23
CCDC28B-201ENST00000373602 KIF14Q15058 1648 aa35.21■■■■□ 3.23
CCDC28B-201ENST00000373602 CCDC18Q5T9S5 1454 aa35.2■■■■□ 3.23
CCDC28B-201ENST00000373602 RICTORQ6R327 1708 aa35.19■■■■□ 3.22
CCDC28B-201ENST00000373602 FYCO1Q9BQS8 1478 aa35.16■■■■□ 3.22
CCDC28B-201ENST00000373602 MYO5CQ9NQX4 1742 aa35.15■■■■□ 3.22
CCDC28B-201ENST00000373602 EFCAB2Q5VUJ9 269 aa35.12■■■■□ 3.21
CCDC28B-201ENST00000373602 SCAPERQ9BY12 1400 aa35.1■■■■□ 3.21
CCDC28B-201ENST00000373602 ZMYM4Q5VZL5 1548 aa35.09■■■■□ 3.21
CCDC28B-201ENST00000373602 ARHGEF40Q8TER5 1519 aa35.09■■■■□ 3.21
CCDC28B-201ENST00000373602 POGZQ7Z3K3 1410 aa35.05■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms