RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 HIRIP3Q9BW71 556 aaPredicted RBP16.61■□□□□ 0.25
SMARCA1-201ENST00000371121 CCER2I3L3R5 266 aa16.56■□□□□ 0.24
SMARCA1-201ENST00000371121 TIAM1Q13009 1591 aa16.53■□□□□ 0.24
SMARCA1-201ENST00000371121 KDM5BQ9UGL1 1544 aa16.53■□□□□ 0.24
SMARCA1-201ENST00000371121 SETD5Q9C0A6 1442 aa16.51■□□□□ 0.23
SMARCA1-201ENST00000371121 IRX6P78412 446 aaPredicted RBP16.5■□□□□ 0.23
SMARCA1-201ENST00000371121 PHLDB1Q86UU1 1377 aa16.5■□□□□ 0.23
SMARCA1-201ENST00000371121 ATAD2BQ9ULI0 1458 aa16.48■□□□□ 0.23
SMARCA1-201ENST00000371121 CUX1P39880 1505 aa16.47■□□□□ 0.23
SMARCA1-201ENST00000371121 NEFLP07196 543 aa16.44■□□□□ 0.22
SMARCA1-201ENST00000371121 MAP3K1Q13233 1512 aa16.44■□□□□ 0.22
SMARCA1-201ENST00000371121 DEKP35659 375 aaKnown RBP16.43■□□□□ 0.22
SMARCA1-201ENST00000371121 LRRC9Q6ZRR7 1453 aa16.43■□□□□ 0.22
SMARCA1-201ENST00000371121 CFAP43Q8NDM7 1665 aa16.42■□□□□ 0.22
SMARCA1-201ENST00000371121 PAK3O75914 559 aaPredicted RBP16.38■□□□□ 0.21
SMARCA1-201ENST00000371121 ANP32CO43423 234 aa16.37■□□□□ 0.21
SMARCA1-201ENST00000371121 CCDC184Q52MB2 194 aa16.37■□□□□ 0.21
SMARCA1-201ENST00000371121 ANO8Q9HCE9 1232 aaPredicted RBP16.36■□□□□ 0.21
SMARCA1-201ENST00000371121 PABPN1Q86U42 306 aaKnown RBP eCLIP16.35■□□□□ 0.21
SMARCA1-201ENST00000371121 PCF11O94913 1555 aaKnown RBP16.33■□□□□ 0.21
SMARCA1-201ENST00000371121 TIMELESSQ9UNS1 1208 aa16.32■□□□□ 0.2
SMARCA1-201ENST00000371121 CDK11AQ9UQ88 783 aaPredicted RBP16.32■□□□□ 0.2
SMARCA1-201ENST00000371121 HNRNPUQ00839 825 aaKnown RBP eCLIP16.31■□□□□ 0.2
SMARCA1-201ENST00000371121 PTPRKQ15262 1439 aa16.29■□□□□ 0.2
SMARCA1-201ENST00000371121 AQRO60306 1485 aaKnown RBP eCLIP16.29■□□□□ 0.23e-12■□□□□ 9.6
SMARCA1-201ENST00000371121 DENND4BO75064 1496 aaPredicted RBP16.28■□□□□ 0.2
SMARCA1-201ENST00000371121 WASHC2AQ641Q2 1341 aa16.28■□□□□ 0.2
SMARCA1-201ENST00000371121 KIF27Q86VH2 1401 aa16.27■□□□□ 0.2
SMARCA1-201ENST00000371121 B4GALNT3Q6L9W6 998 aa16.27■□□□□ 0.19
SMARCA1-201ENST00000371121 NCOA2Q15596 1464 aa16.27■□□□□ 0.19
SMARCA1-201ENST00000371121 NCAPD3P42695 1498 aa16.26■□□□□ 0.19
SMARCA1-201ENST00000371121 PPP4R2Q9NY27 417 aa16.25■□□□□ 0.19
SMARCA1-201ENST00000371121 LRRIQ1Q96JM4 1722 aa16.25■□□□□ 0.19
SMARCA1-201ENST00000371121 SALL2Q9Y467 1007 aaPredicted RBP16.24■□□□□ 0.19
SMARCA1-201ENST00000371121 FHAD1B1AJZ9 1412 aa16.24■□□□□ 0.19
SMARCA1-201ENST00000371121 PTPN23Q9H3S7 1636 aa16.23■□□□□ 0.19
SMARCA1-201ENST00000371121 NBR1Q14596 966 aa16.21■□□□□ 0.19
SMARCA1-201ENST00000371121 IGF1RP08069 1367 aa16.21■□□□□ 0.19
SMARCA1-201ENST00000371121 ERICH6BQ5W0A0 696 aa16.21■□□□□ 0.18
SMARCA1-201ENST00000371121 NOP58Q9Y2X3 529 aaKnown RBP16.2■□□□□ 0.18
SMARCA1-201ENST00000371121 FAM50AQ14320 339 aaKnown RBP16.2■□□□□ 0.18
SMARCA1-201ENST00000371121 C11orf95C9JLR9 678 aaPredicted RBP16.19■□□□□ 0.18
SMARCA1-201ENST00000371121 ERICH6Q7L0X2 663 aa16.19■□□□□ 0.18
SMARCA1-201ENST00000371121 CCDC18Q5T9S5 1454 aa16.19■□□□□ 0.18
SMARCA1-201ENST00000371121 MYT1LQ9UL68 1186 aa16.18■□□□□ 0.18
SMARCA1-201ENST00000371121 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.18■□□□□ 0.184e-6■□□□□ 8.3
SMARCA1-201ENST00000371121 IL27Q8NEV9 243 aa16.17■□□□□ 0.18
SMARCA1-201ENST00000371121 UACAQ9BZF9 1416 aa16.16■□□□□ 0.18
SMARCA1-201ENST00000371121 HFM1A2PYH4 1435 aa16.15■□□□□ 0.18
SMARCA1-201ENST00000371121 TONSLQ96HA7 1378 aa16.14■□□□□ 0.17
SMARCA1-201ENST00000371121 POLR1AO95602 1720 aaPredicted RBP16.14■□□□□ 0.17
SMARCA1-201ENST00000371121 KDM6BO15054 1643 aa16.13■□□□□ 0.17
SMARCA1-201ENST00000371121 AKNAQ7Z591 1439 aa16.13■□□□□ 0.17
SMARCA1-201ENST00000371121 NAIPQ13075 1403 aa16.13■□□□□ 0.17
SMARCA1-201ENST00000371121 CNTLNQ9NXG0 1405 aa16.13■□□□□ 0.17
SMARCA1-201ENST00000371121 PRDM2Q13029 1718 aa16.11■□□□□ 0.17
SMARCA1-201ENST00000371121 HSPA5P11021 654 aaKnown RBP16.11■□□□□ 0.17
SMARCA1-201ENST00000371121 FGD6Q6ZV73 1430 aa16.11■□□□□ 0.17
SMARCA1-201ENST00000371121 ZBED9Q6R2W3 1325 aa16.11■□□□□ 0.17
SMARCA1-201ENST00000371121 ABCA5Q8WWZ7 1642 aa16.1■□□□□ 0.17
SMARCA1-201ENST00000371121 CFTRP13569 1480 aa16.09■□□□□ 0.17
SMARCA1-201ENST00000371121 RNF123Q5XPI4 1314 aa16.09■□□□□ 0.17
SMARCA1-201ENST00000371121 NCOA1Q15788 1441 aa16.08■□□□□ 0.17
SMARCA1-201ENST00000371121 PRKRIP1Q9H875 184 aaPredicted RBP16.08■□□□□ 0.16
SMARCA1-201ENST00000371121 FYCO1Q9BQS8 1478 aa16.08■□□□□ 0.16
SMARCA1-201ENST00000371121 FHOD3Q2V2M9 1422 aa16.07■□□□□ 0.16
SMARCA1-201ENST00000371121 CCDC136Q96JN2 1154 aa16.06■□□□□ 0.16
SMARCA1-201ENST00000371121 SNAPC4Q5SXM2 1469 aa16.06■□□□□ 0.16
SMARCA1-201ENST00000371121 FGD5Q6ZNL6 1462 aa16.06■□□□□ 0.16
SMARCA1-201ENST00000371121 HECW1Q76N89 1606 aa16.05■□□□□ 0.16
SMARCA1-201ENST00000371121 IPO9Q96P70 1041 aaKnown RBP16.05■□□□□ 0.16
SMARCA1-201ENST00000371121 CARMIL1Q5VZK9 1371 aa16.04■□□□□ 0.16
SMARCA1-201ENST00000371121 HMGXB3Q12766 1538 aa16.03■□□□□ 0.16
SMARCA1-201ENST00000371121 CASKIN1Q8WXD9 1431 aa16.03■□□□□ 0.16
SMARCA1-201ENST00000371121 GCC2Q8IWJ2 1684 aa16.03■□□□□ 0.16
SMARCA1-201ENST00000371121 P3H3Q8IVL6 736 aa16.02■□□□□ 0.16
SMARCA1-201ENST00000371121 FAM9BQ8IZU0 186 aa16.02■□□□□ 0.16
SMARCA1-201ENST00000371121 SMG6Q86US8 1419 aaKnown RBP16.02■□□□□ 0.16
SMARCA1-201ENST00000371121 SPATA31E1Q6ZUB1 1445 aa16.02■□□□□ 0.15
SMARCA1-201ENST00000371121 CCDC7Q96M83 1385 aa16.01■□□□□ 0.15
SMARCA1-201ENST00000371121 RTN4Q9NQC3 1192 aaKnown RBP15.98■□□□□ 0.15
SMARCA1-201ENST00000371121 BCORL1Q5H9F3 1711 aa15.98■□□□□ 0.15
SMARCA1-201ENST00000371121 CTTNBP2Q8WZ74 1663 aa15.97■□□□□ 0.15
SMARCA1-201ENST00000371121 MAGI3Q5TCQ9 1506 aa15.97■□□□□ 0.15
SMARCA1-201ENST00000371121 ARHGEF11O15085 1522 aa15.96■□□□□ 0.15
SMARCA1-201ENST00000371121 DHX29Q7Z478 1369 aaKnown RBP15.96■□□□□ 0.15
SMARCA1-201ENST00000371121 MRS2Q9HD23 443 aa15.95■□□□□ 0.14
SMARCA1-201ENST00000371121 EFCAB5A4FU69 1503 aa15.94■□□□□ 0.14
SMARCA1-201ENST00000371121 TEX14Q8IWB6 1497 aa15.94■□□□□ 0.14
SMARCA1-201ENST00000371121 WASHC2CQ9Y4E1 1318 aa15.93■□□□□ 0.14
SMARCA1-201ENST00000371121 NBPF8Q3BBV2 869 aa15.93■□□□□ 0.14
SMARCA1-201ENST00000371121 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.92■□□□□ 0.14
SMARCA1-201ENST00000371121 KIF7Q2M1P5 1343 aa15.92■□□□□ 0.14
SMARCA1-201ENST00000371121 FMN1Q68DA7 1419 aa15.91■□□□□ 0.14
SMARCA1-201ENST00000371121 MYOM3Q5VTT5 1437 aa15.9■□□□□ 0.14
SMARCA1-201ENST00000371121 SENP3-EIF4A1A0A087X0R7 540 aa15.9■□□□□ 0.14
SMARCA1-201ENST00000371121 SAMD9Q5K651 1589 aa15.89■□□□□ 0.13
SMARCA1-201ENST00000371121 EIF4G2P78344 907 aaKnown RBP eCLIP15.89■□□□□ 0.13
SMARCA1-201ENST00000371121 L3MBTL2Q969R5 705 aa15.89■□□□□ 0.13
SMARCA1-201ENST00000371121 UGGT2Q9NYU1 1516 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms