RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 NISCHQ9Y2I1 1504 aa22.65■■□□□ 1.22
SMARCA1-201ENST00000371121 HRCP23327 699 aa20.08■□□□□ 0.8
SMARCA1-201ENST00000371121 MYO15BQ96JP2 1530 aa19.98■□□□□ 0.79
SMARCA1-201ENST00000371121 SHROOM4Q9ULL8 1493 aa19.86■□□□□ 0.77
SMARCA1-201ENST00000371121 PPARGC1BQ86YN6 1023 aaKnown RBP19.79■□□□□ 0.76
SMARCA1-201ENST00000371121 SUPT5HO00267 1087 aaKnown RBP19.66■□□□□ 0.74
SMARCA1-201ENST00000371121 PCGF6Q9BYE7 350 aa19.59■□□□□ 0.73
SMARCA1-201ENST00000371121 CHIC1Q5VXU3 224 aa19.54■□□□□ 0.72
SMARCA1-201ENST00000371121 ZCCHC6Q5VYS8 1495 aaKnown RBP19.34■□□□□ 0.69
SMARCA1-201ENST00000371121 DCAF1Q9Y4B6 1507 aa19.3■□□□□ 0.68
SMARCA1-201ENST00000371121 CCDC180Q9P1Z9 1646 aa19.15■□□□□ 0.66
SMARCA1-201ENST00000371121 SCAF1Q9H7N4 1312 aaKnown RBP19.11■□□□□ 0.65
SMARCA1-201ENST00000371121 LOC105371045A0A1W2PR82 267 aa19.09■□□□□ 0.65
SMARCA1-201ENST00000371121 PELP1Q8IZL8 1130 aaKnown RBP19■□□□□ 0.63
SMARCA1-201ENST00000371121 TRIM26Q12899 539 aaPredicted RBP18.93■□□□□ 0.62
SMARCA1-201ENST00000371121 ZEB1P37275 1124 aaPredicted RBP18.58■□□□□ 0.57
SMARCA1-201ENST00000371121 NEUROD1Q13562 356 aa18.52■□□□□ 0.56
SMARCA1-201ENST00000371121 ACIN1Q9UKV3 1341 aaKnown RBP18.47■□□□□ 0.55
SMARCA1-201ENST00000371121 ABCC9O60706 1549 aa18.42■□□□□ 0.54
SMARCA1-201ENST00000371121 DCAF8L2P0C7V8 631 aa18.35■□□□□ 0.53
SMARCA1-201ENST00000371121 GTF3C3Q9Y5Q9 886 aa18.3■□□□□ 0.52
SMARCA1-201ENST00000371121 RB1CC1Q8TDY2 1594 aa18.28■□□□□ 0.52
SMARCA1-201ENST00000371121 RSF1Q96T23 1441 aaPredicted RBP18.23■□□□□ 0.51
SMARCA1-201ENST00000371121 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.19■□□□□ 0.5
SMARCA1-201ENST00000371121 FAM9AQ8IZU1 332 aaPredicted RBP18.15■□□□□ 0.5
SMARCA1-201ENST00000371121 TRIM41Q8WV44 630 aa18.13■□□□□ 0.49
SMARCA1-201ENST00000371121 MYT1Q01538 1121 aa18.12■□□□□ 0.49
SMARCA1-201ENST00000371121 DIEXFQ68CQ4 756 aaKnown RBP18.09■□□□□ 0.49
SMARCA1-201ENST00000371121 EHMT2Q96KQ7 1210 aa18.07■□□□□ 0.48
SMARCA1-201ENST00000371121 CCER1Q8TC90 406 aaPredicted RBP17.96■□□□□ 0.47
SMARCA1-201ENST00000371121 SCRIBQ14160 1630 aa17.94■□□□□ 0.46
SMARCA1-201ENST00000371121 EIF4G1Q04637 1599 aaKnown RBP17.93■□□□□ 0.46
SMARCA1-201ENST00000371121 CENPBP07199 599 aaPredicted RBP17.92■□□□□ 0.46
SMARCA1-201ENST00000371121 WRNQ14191 1432 aaPredicted RBP eCLIP17.8■□□□□ 0.44
SMARCA1-201ENST00000371121 CECR2Q9BXF3 1484 aa17.77■□□□□ 0.44
SMARCA1-201ENST00000371121 WIZO95785 1651 aa17.77■□□□□ 0.43
SMARCA1-201ENST00000371121 MROH2BQ7Z745 1585 aa17.76■□□□□ 0.43
SMARCA1-201ENST00000371121 MIER1Q8N108 512 aa17.76■□□□□ 0.43
SMARCA1-201ENST00000371121 ZNF316A6NFI3 1004 aaPredicted RBP17.74■□□□□ 0.43
SMARCA1-201ENST00000371121 YTHDC1Q96MU7 727 aaKnown RBP17.74■□□□□ 0.43
SMARCA1-201ENST00000371121 TTBK1Q5TCY1 1321 aaPredicted RBP17.64■□□□□ 0.41
SMARCA1-201ENST00000371121 CEP162Q5TB80 1403 aa17.63■□□□□ 0.41
SMARCA1-201ENST00000371121 ABCC8Q09428 1581 aa17.61■□□□□ 0.41
SMARCA1-201ENST00000371121 CCDC88BA6NC98 1476 aa17.61■□□□□ 0.41
SMARCA1-201ENST00000371121 BAZ1AQ9NRL2 1556 aaPredicted RBP17.58■□□□□ 0.4
SMARCA1-201ENST00000371121 NACADO15069 1562 aa17.57■□□□□ 0.4
SMARCA1-201ENST00000371121 SOGA1O94964 1423 aa17.52■□□□□ 0.39
SMARCA1-201ENST00000371121 RUSC2Q8N2Y8 1516 aa17.5■□□□□ 0.39
SMARCA1-201ENST00000371121 SUPT16HQ9Y5B9 1047 aaKnown RBP17.49■□□□□ 0.39
SMARCA1-201ENST00000371121 TNIKQ9UKE5 1360 aa17.47■□□□□ 0.39
SMARCA1-201ENST00000371121 TSHZ2Q9NRE2 1034 aa17.45■□□□□ 0.38
SMARCA1-201ENST00000371121 BCL11AQ9H165 835 aa17.36■□□□□ 0.37
SMARCA1-201ENST00000371121 ANP32EQ9BTT0 268 aa17.35■□□□□ 0.37
SMARCA1-201ENST00000371121 SMARCA2P51531 1590 aa17.34■□□□□ 0.37
SMARCA1-201ENST00000371121 TOP2AP11388 1531 aaKnown RBP17.29■□□□□ 0.36
SMARCA1-201ENST00000371121 HNRNPUL2Q1KMD3 747 aaKnown RBP17.28■□□□□ 0.36
SMARCA1-201ENST00000371121 CSRNP3Q8WYN3 585 aa17.27■□□□□ 0.36
SMARCA1-201ENST00000371121 GOLGA3Q08378 1498 aa17.22■□□□□ 0.35
SMARCA1-201ENST00000371121 KCNH8Q96L42 1107 aa17.2■□□□□ 0.34
SMARCA1-201ENST00000371121 DHX57Q6P158 1386 aaKnown RBP17.19■□□□□ 0.34
SMARCA1-201ENST00000371121 CLIP1P30622 1438 aa17.19■□□□□ 0.34
SMARCA1-201ENST00000371121 CLSPNQ9HAW4 1339 aa17.18■□□□□ 0.34
SMARCA1-201ENST00000371121 EEA1Q15075 1411 aa17.18■□□□□ 0.34
SMARCA1-201ENST00000371121 KIF21BO75037 1637 aa17.17■□□□□ 0.34
SMARCA1-201ENST00000371121 SMARCA4P51532 1647 aa17.15■□□□□ 0.34
SMARCA1-201ENST00000371121 VPS8Q8N3P4 1428 aa17.12■□□□□ 0.33
SMARCA1-201ENST00000371121 UBTFP17480 764 aaKnown RBP17.12■□□□□ 0.33
SMARCA1-201ENST00000371121 SYNJ1O43426 1573 aa17.11■□□□□ 0.33
SMARCA1-201ENST00000371121 CEP164Q9UPV0 1460 aa17.04■□□□□ 0.32
SMARCA1-201ENST00000371121 RAPGEF2Q9Y4G8 1499 aa17.03■□□□□ 0.32
SMARCA1-201ENST00000371121 MSH5O43196 834 aa17■□□□□ 0.31
SMARCA1-201ENST00000371121 UNC13AQ9UPW8 1703 aa17■□□□□ 0.31
SMARCA1-201ENST00000371121 CUX2O14529 1486 aa16.97■□□□□ 0.31
SMARCA1-201ENST00000371121 BCANQ96GW7 911 aa16.97■□□□□ 0.31
SMARCA1-201ENST00000371121 BAZ1BQ9UIG0 1483 aaKnown RBP16.96■□□□□ 0.31
SMARCA1-201ENST00000371121 RBM19Q9Y4C8 960 aaKnown RBP16.96■□□□□ 0.31
SMARCA1-201ENST00000371121 MAPKBP1O60336 1514 aa16.95■□□□□ 0.3
SMARCA1-201ENST00000371121 ARAP1Q96P48 1450 aa16.92■□□□□ 0.3
SMARCA1-201ENST00000371121 KANK4Q5T7N3 995 aaPredicted RBP16.9■□□□□ 0.3
SMARCA1-201ENST00000371121 RRBP1Q9P2E9 1410 aaKnown RBP16.89■□□□□ 0.29
SMARCA1-201ENST00000371121 FKBP8Q14318 412 aa16.89■□□□□ 0.29
SMARCA1-201ENST00000371121 WDR97A6NE52 1622 aa16.85■□□□□ 0.29
SMARCA1-201ENST00000371121 ITGAEP38570 1179 aa16.81■□□□□ 0.28
SMARCA1-201ENST00000371121 PEG3Q9GZU2 1588 aa16.78■□□□□ 0.28
SMARCA1-201ENST00000371121 PPP1R15AO75807 674 aaPredicted RBP16.77■□□□□ 0.28
SMARCA1-201ENST00000371121 RANGAP1P46060 587 aaPredicted RBP16.75■□□□□ 0.27
SMARCA1-201ENST00000371121 PRXQ9BXM0 1461 aa16.73■□□□□ 0.27
SMARCA1-201ENST00000371121 TOP2BQ02880 1626 aa16.72■□□□□ 0.27
SMARCA1-201ENST00000371121 ERICH3Q5RHP9 1530 aa16.71■□□□□ 0.27
SMARCA1-201ENST00000371121 RAB3GAP2Q9H2M9 1393 aa16.7■□□□□ 0.26
SMARCA1-201ENST00000371121 DDX10Q13206 875 aaKnown RBP16.69■□□□□ 0.26
SMARCA1-201ENST00000371121 BIVM-ERCC5R4GMW8 1640 aa16.68■□□□□ 0.26
SMARCA1-201ENST00000371121 TRIM52Q96A61 297 aa16.67■□□□□ 0.26
SMARCA1-201ENST00000371121 CCNB3Q8WWL7 1395 aa16.67■□□□□ 0.26
SMARCA1-201ENST00000371121 APLP2Q06481 763 aa16.66■□□□□ 0.26
SMARCA1-201ENST00000371121 PRKCSHP14314 528 aaPredicted RBP16.65■□□□□ 0.26
SMARCA1-201ENST00000371121 FANCIQ9NVI1 1328 aa16.65■□□□□ 0.26
SMARCA1-201ENST00000371121 BICRAQ9NZM4 1560 aa16.63■□□□□ 0.25
SMARCA1-201ENST00000371121 ARHGAP35Q9NRY4 1499 aa16.62■□□□□ 0.25
SMARCA1-201ENST00000371121 SIN3AQ96ST3 1273 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 126.2 ms