RNA–Protein interactions for RNA: ENST00000368215.7

PTPRK-206, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 4,651 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-206ENST00000368215 HNRNPUQ00839 825 aaKnown RBP eCLIP11.74□□□□□ -0.53
PTPRK-206ENST00000368215 RAB3GAP2Q9H2M9 1393 aa11.72□□□□□ -0.53
PTPRK-206ENST00000368215 FAM9BQ8IZU0 186 aa11.72□□□□□ -0.53
PTPRK-206ENST00000368215 SLC4A1APQ9BWU0 796 aaKnown RBP11.72□□□□□ -0.53
PTPRK-206ENST00000368215 EIF4G1Q04637 1599 aaKnown RBP11.71□□□□□ -0.54
PTPRK-206ENST00000368215 FHOD3Q2V2M9 1422 aa11.71□□□□□ -0.54
PTPRK-206ENST00000368215 SETD5Q9C0A6 1442 aa11.69□□□□□ -0.54
PTPRK-206ENST00000368215 BICRAQ9NZM4 1560 aa11.68□□□□□ -0.54
PTPRK-206ENST00000368215 NCAPD3P42695 1498 aa11.68□□□□□ -0.54
PTPRK-206ENST00000368215 KDM2AQ9Y2K7 1162 aa11.68□□□□□ -0.54
PTPRK-206ENST00000368215 MYT1Q01538 1121 aa11.68□□□□□ -0.54
PTPRK-206ENST00000368215 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.68□□□□□ -0.545e-7■■□□□ 13.3
PTPRK-206ENST00000368215 IGF1RP08069 1367 aa11.68□□□□□ -0.54
PTPRK-206ENST00000368215 KIF21BO75037 1637 aa11.67□□□□□ -0.54
PTPRK-206ENST00000368215 DHX57Q6P158 1386 aaKnown RBP11.67□□□□□ -0.54
PTPRK-206ENST00000368215 EIF4G2P78344 907 aaKnown RBP eCLIP11.66□□□□□ -0.54
PTPRK-206ENST00000368215 TSPY4P0CV99 314 aa11.66□□□□□ -0.54
PTPRK-206ENST00000368215 TSPY10P0CW01 314 aa11.66□□□□□ -0.54
PTPRK-206ENST00000368215 FANCD2Q9BXW9 1451 aa11.65□□□□□ -0.54
PTPRK-206ENST00000368215 ARHGAP35Q9NRY4 1499 aa11.65□□□□□ -0.54
PTPRK-206ENST00000368215 CFDP1Q9UEE9 299 aaPredicted RBP11.65□□□□□ -0.54
PTPRK-206ENST00000368215 IRX6P78412 446 aaPredicted RBP11.64□□□□□ -0.55
PTPRK-206ENST00000368215 FGD5Q6ZNL6 1462 aa11.64□□□□□ -0.55
PTPRK-206ENST00000368215 MRS2Q9HD23 443 aa11.63□□□□□ -0.55
PTPRK-206ENST00000368215 PLEKHD1A6NEE1 506 aa11.62□□□□□ -0.55
PTPRK-206ENST00000368215 SENP3-EIF4A1A0A087X0R7 540 aa11.62□□□□□ -0.55
PTPRK-206ENST00000368215 RAD54L2Q9Y4B4 1467 aa11.62□□□□□ -0.55
PTPRK-206ENST00000368215 FOXD1Q16676 465 aa11.62□□□□□ -0.55
PTPRK-206ENST00000368215 PDS5BQ9NTI5 1447 aa11.62□□□□□ -0.55
PTPRK-206ENST00000368215 SALL2Q9Y467 1007 aaPredicted RBP11.61□□□□□ -0.55
PTPRK-206ENST00000368215 ARAP1Q96P48 1450 aa11.61□□□□□ -0.55
PTPRK-206ENST00000368215 KCNH8Q96L42 1107 aa11.6□□□□□ -0.55
PTPRK-206ENST00000368215 FMN1Q68DA7 1419 aa11.59□□□□□ -0.55
PTPRK-206ENST00000368215 ERCC6Q03468 1493 aa11.59□□□□□ -0.55
PTPRK-206ENST00000368215 CFTRP13569 1480 aa11.58□□□□□ -0.56
PTPRK-206ENST00000368215 UNC13AQ9UPW8 1703 aa11.57□□□□□ -0.56
PTPRK-206ENST00000368215 CUX1P39880 1505 aa11.57□□□□□ -0.56
PTPRK-206ENST00000368215 RGL3Q3MIN7 710 aa11.56□□□□□ -0.56
PTPRK-206ENST00000368215 PRXQ9BXM0 1461 aa11.56□□□□□ -0.56
PTPRK-206ENST00000368215 TOP2BQ02880 1626 aa11.56□□□□□ -0.56
PTPRK-206ENST00000368215 PPP1R15AO75807 674 aaPredicted RBP11.55□□□□□ -0.56
PTPRK-206ENST00000368215 TMC1Q8TDI8 760 aa11.55□□□□□ -0.56
PTPRK-206ENST00000368215 SUPT16HQ9Y5B9 1047 aaKnown RBP11.54□□□□□ -0.56
PTPRK-206ENST00000368215 TIMELESSQ9UNS1 1208 aa11.54□□□□□ -0.56
PTPRK-206ENST00000368215 PHLDB1Q86UU1 1377 aa11.53□□□□□ -0.56
PTPRK-206ENST00000368215 CHGAP10645 457 aaKnown RBP11.53□□□□□ -0.56
PTPRK-206ENST00000368215 NESP48681 1621 aa11.52□□□□□ -0.57
PTPRK-206ENST00000368215 HSPA5P11021 654 aaKnown RBP11.51□□□□□ -0.57
PTPRK-206ENST00000368215 ERICH3Q5RHP9 1530 aa11.51□□□□□ -0.57
PTPRK-206ENST00000368215 DAXXQ9UER7 740 aaPredicted RBP11.5□□□□□ -0.57
PTPRK-206ENST00000368215 MPHOSPH9Q99550 1183 aa11.5□□□□□ -0.57
PTPRK-206ENST00000368215 HMGXB3Q12766 1538 aa11.49□□□□□ -0.57
PTPRK-206ENST00000368215 CARD11Q9BXL7 1154 aa11.48□□□□□ -0.57
PTPRK-206ENST00000368215 PEG3Q9GZU2 1588 aa11.47□□□□□ -0.57
PTPRK-206ENST00000368215 GAPVD1Q14C86 1478 aa11.47□□□□□ -0.57
PTPRK-206ENST00000368215 LRRC9Q6ZRR7 1453 aa11.47□□□□□ -0.57
PTPRK-206ENST00000368215 L3MBTL2Q969R5 705 aa11.46□□□□□ -0.58
PTPRK-206ENST00000368215 PKD2Q13563 968 aa11.45□□□□□ -0.58
PTPRK-206ENST00000368215 DNAJC5BQ9UF47 199 aa11.45□□□□□ -0.58
PTPRK-206ENST00000368215 RRBP1Q9P2E9 1410 aaKnown RBP11.44□□□□□ -0.58
PTPRK-206ENST00000368215 SENP3Q9H4L4 574 aaPredicted RBP11.44□□□□□ -0.58
PTPRK-206ENST00000368215 CC2D2AQ9P2K1 1620 aa11.43□□□□□ -0.58
PTPRK-206ENST00000368215 NPM1P06748 294 aaKnown RBP eCLIP11.43□□□□□ -0.58
PTPRK-206ENST00000368215 DCAF11Q8TEB1 546 aa11.43□□□□□ -0.58
PTPRK-206ENST00000368215 CCER2I3L3R5 266 aa11.42□□□□□ -0.58
PTPRK-206ENST00000368215 AQRO60306 1485 aaKnown RBP eCLIP11.42□□□□□ -0.589e-8■■■■■ 30.5
PTPRK-206ENST00000368215 CCDC136Q96JN2 1154 aa11.42□□□□□ -0.58
PTPRK-206ENST00000368215 NPM2Q86SE8 214 aaKnown RBP11.41□□□□□ -0.58
PTPRK-206ENST00000368215 FGD6Q6ZV73 1430 aa11.41□□□□□ -0.58
PTPRK-206ENST00000368215 CCDC18Q5T9S5 1454 aa11.41□□□□□ -0.58
PTPRK-206ENST00000368215 POLA1P09884 1462 aaPredicted RBP11.41□□□□□ -0.58
PTPRK-206ENST00000368215 JPH4Q96JJ6 628 aa11.41□□□□□ -0.58
PTPRK-206ENST00000368215 RTL5Q5HYW3 569 aaPredicted RBP11.39□□□□□ -0.59
PTPRK-206ENST00000368215 TOPBP1Q92547 1522 aa11.39□□□□□ -0.59
PTPRK-206ENST00000368215 ZNF644Q9H582 1327 aaPredicted RBP11.39□□□□□ -0.59
PTPRK-206ENST00000368215 CARMIL2Q6F5E8 1435 aa11.38□□□□□ -0.59
PTPRK-206ENST00000368215 CANXP27824 592 aaKnown RBP11.38□□□□□ -0.59
PTPRK-206ENST00000368215 HNRNPMP52272 730 aaKnown RBP eCLIP11.38□□□□□ -0.592e-6■■■□□ 18
PTPRK-206ENST00000368215 CASKIN1Q8WXD9 1431 aa11.38□□□□□ -0.59
PTPRK-206ENST00000368215 NUP155O75694 1391 aa11.37□□□□□ -0.59
PTPRK-206ENST00000368215 MYOM3Q5VTT5 1437 aa11.35□□□□□ -0.59
PTPRK-206ENST00000368215 WDR43Q15061 677 aaKnown RBP eCLIP11.35□□□□□ -0.59
PTPRK-206ENST00000368215 ANP32AP39687 249 aaKnown RBP11.34□□□□□ -0.59
PTPRK-206ENST00000368215 NCOA2Q15596 1464 aa11.34□□□□□ -0.59
PTPRK-206ENST00000368215 TIAM1Q13009 1591 aa11.34□□□□□ -0.59
PTPRK-206ENST00000368215 CC2D1BQ5T0F9 858 aaKnown RBP11.33□□□□□ -0.59
PTPRK-206ENST00000368215 ANKRD30AQ9BXX3 1397 aa11.33□□□□□ -0.6
PTPRK-206ENST00000368215 B4GALNT3Q6L9W6 998 aa11.33□□□□□ -0.6
PTPRK-206ENST00000368215 BCL11AQ9H165 835 aa11.32□□□□□ -0.6
PTPRK-206ENST00000368215 FYCO1Q9BQS8 1478 aa11.32□□□□□ -0.6
PTPRK-206ENST00000368215 STAG3Q9UJ98 1225 aa11.31□□□□□ -0.6
PTPRK-206ENST00000368215 BIVM-ERCC5R4GMW8 1640 aa11.31□□□□□ -0.6
PTPRK-206ENST00000368215 UACAQ9BZF9 1416 aa11.3□□□□□ -0.6
PTPRK-206ENST00000368215 DNMBPQ6XZF7 1577 aa11.29□□□□□ -0.6
PTPRK-206ENST00000368215 KNSTRNQ9Y448 316 aa11.29□□□□□ -0.6
PTPRK-206ENST00000368215 PPP4R2Q9NY27 417 aa11.28□□□□□ -0.6
PTPRK-206ENST00000368215 ABCA10Q8WWZ4 1543 aa11.27□□□□□ -0.6
PTPRK-206ENST00000368215 PLPPR3Q6T4P5 718 aa11.27□□□□□ -0.61
PTPRK-206ENST00000368215 TSHZ2Q9NRE2 1034 aa11.27□□□□□ -0.61
PTPRK-206ENST00000368215 PCF11O94913 1555 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms