RNA–Protein interactions for RNA: ENST00000361337.2

TOP1-201, Transcript of DNA topoisomerase I, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP1, Length 3,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP1-201ENST00000361337 VPS8Q8N3P4 1428 aa13.21□□□□□ -0.29
TOP1-201ENST00000361337 CEP164Q9UPV0 1460 aa13.21□□□□□ -0.29
TOP1-201ENST00000361337 RAPGEF2Q9Y4G8 1499 aa13.21□□□□□ -0.3
TOP1-201ENST00000361337 CADPSQ9ULU8 1353 aa13.21□□□□□ -0.3
TOP1-201ENST00000361337 ERCC6Q03468 1493 aa13.2□□□□□ -0.3
TOP1-201ENST00000361337 NESP48681 1621 aa13.2□□□□□ -0.3
TOP1-201ENST00000361337 SUPT16HQ9Y5B9 1047 aaKnown RBP13.2□□□□□ -0.3
TOP1-201ENST00000361337 THOC2Q8NI27 1593 aaKnown RBP13.19□□□□□ -0.3
TOP1-201ENST00000361337 SAMD9Q5K651 1589 aa13.19□□□□□ -0.3
TOP1-201ENST00000361337 CHMP7Q8WUX9 453 aaPredicted RBP13.19□□□□□ -0.3
TOP1-201ENST00000361337 DHX57Q6P158 1386 aaKnown RBP13.16□□□□□ -0.3
TOP1-201ENST00000361337 MYT1LQ9UL68 1186 aa13.16□□□□□ -0.3
TOP1-201ENST00000361337 KANK4Q5T7N3 995 aaPredicted RBP13.14□□□□□ -0.31
TOP1-201ENST00000361337 CUX2O14529 1486 aa13.13□□□□□ -0.31
TOP1-201ENST00000361337 MAP3K1Q13233 1512 aa13.13□□□□□ -0.31
TOP1-201ENST00000361337 KCNH8Q96L42 1107 aa13.13□□□□□ -0.31
TOP1-201ENST00000361337 ABCA10Q8WWZ4 1543 aa13.12□□□□□ -0.31
TOP1-201ENST00000361337 WDR62O43379 1518 aa13.11□□□□□ -0.31
TOP1-201ENST00000361337 TSHZ2Q9NRE2 1034 aa13.08□□□□□ -0.32
TOP1-201ENST00000361337 KIF27Q86VH2 1401 aa13.07□□□□□ -0.32
TOP1-201ENST00000361337 ZNF777Q9ULD5 760 aaPredicted RBP13.07□□□□□ -0.32
TOP1-201ENST00000361337 FANCD2Q9BXW9 1451 aa13.05□□□□□ -0.32
TOP1-201ENST00000361337 PDS5BQ9NTI5 1447 aa13.03□□□□□ -0.32
TOP1-201ENST00000361337 RAD54L2Q9Y4B4 1467 aa13.03□□□□□ -0.32
TOP1-201ENST00000361337 CARMIL1Q5VZK9 1371 aa13.03□□□□□ -0.32
TOP1-201ENST00000361337 ARAP1Q96P48 1450 aa13.02□□□□□ -0.32
TOP1-201ENST00000361337 CLSPNQ9HAW4 1339 aa13.02□□□□□ -0.33
TOP1-201ENST00000361337 URB2Q14146 1524 aaKnown RBP13.01□□□□□ -0.33
TOP1-201ENST00000361337 CHIC2Q9UKJ5 165 aa12.99□□□□□ -0.33
TOP1-201ENST00000361337 TOPBP1Q92547 1522 aa12.98□□□□□ -0.33
TOP1-201ENST00000361337 NEFLP07196 543 aa12.98□□□□□ -0.33
TOP1-201ENST00000361337 ADAMTS12P58397 1594 aa12.97□□□□□ -0.33
TOP1-201ENST00000361337 ARHGEF11O15085 1522 aa12.96□□□□□ -0.33
TOP1-201ENST00000361337 CNGB1Q14028 1251 aaPredicted RBP12.95□□□□□ -0.34
TOP1-201ENST00000361337 TRIM52Q96A61 297 aa12.95□□□□□ -0.34
TOP1-201ENST00000361337 RRBP1Q9P2E9 1410 aaKnown RBP12.94□□□□□ -0.34
TOP1-201ENST00000361337 ANP32EQ9BTT0 268 aa12.92□□□□□ -0.34
TOP1-201ENST00000361337 CCNB3Q8WWL7 1395 aa12.92□□□□□ -0.34
TOP1-201ENST00000361337 HIRIP3Q9BW71 556 aaPredicted RBP12.91□□□□□ -0.34
TOP1-201ENST00000361337 AQRO60306 1485 aaKnown RBP eCLIP12.91□□□□□ -0.346e-7■■■■■ 28.8
TOP1-201ENST00000361337 FGD5Q6ZNL6 1462 aa12.91□□□□□ -0.34
TOP1-201ENST00000361337 DDX10Q13206 875 aaKnown RBP12.91□□□□□ -0.34
TOP1-201ENST00000361337 EFCAB5A4FU69 1503 aa12.91□□□□□ -0.34
TOP1-201ENST00000361337 FKBP8Q14318 412 aa12.9□□□□□ -0.34
TOP1-201ENST00000361337 SIN3AQ96ST3 1273 aa12.9□□□□□ -0.34
TOP1-201ENST00000361337 ADCY10Q96PN6 1610 aa12.9□□□□□ -0.34
TOP1-201ENST00000361337 RAB3GAP2Q9H2M9 1393 aa12.9□□□□□ -0.35
TOP1-201ENST00000361337 SHROOM2Q13796 1616 aa12.89□□□□□ -0.35
TOP1-201ENST00000361337 POLA1P09884 1462 aaPredicted RBP12.89□□□□□ -0.35
TOP1-201ENST00000361337 MAPKBP1O60336 1514 aa12.88□□□□□ -0.35
TOP1-201ENST00000361337 IGF1RP08069 1367 aa12.87□□□□□ -0.35
TOP1-201ENST00000361337 ARHGAP35Q9NRY4 1499 aa12.86□□□□□ -0.35
TOP1-201ENST00000361337 POLR3GLQ9BT43 218 aa12.85□□□□□ -0.35
TOP1-201ENST00000361337 SNAPC4Q5SXM2 1469 aa12.84□□□□□ -0.35
TOP1-201ENST00000361337 EIF5BO60841 1220 aaKnown RBP12.83□□□□□ -0.36
TOP1-201ENST00000361337 MTUS2Q5JR59 1369 aa12.83□□□□□ -0.36
TOP1-201ENST00000361337 RRP7BPQ9NSQ0 103 aa12.82□□□□□ -0.36
TOP1-201ENST00000361337 ZNF326Q5BKZ1 582 aaKnown RBP12.8□□□□□ -0.36
TOP1-201ENST00000361337 FHOD3Q2V2M9 1422 aa12.8□□□□□ -0.36
TOP1-201ENST00000361337 PPP1R15AO75807 674 aaPredicted RBP12.79□□□□□ -0.36
TOP1-201ENST00000361337 PLPPR3Q6T4P5 718 aa12.79□□□□□ -0.36
TOP1-201ENST00000361337 TIAM1Q13009 1591 aa12.79□□□□□ -0.36
TOP1-201ENST00000361337 SENP3Q9H4L4 574 aaPredicted RBP12.79□□□□□ -0.36
TOP1-201ENST00000361337 EIF4G3O43432 1585 aaKnown RBP12.78□□□□□ -0.36
TOP1-201ENST00000361337 CROCC2H7BZ55 1655 aa12.78□□□□□ -0.36
TOP1-201ENST00000361337 PRKCSHP14314 528 aaPredicted RBP12.78□□□□□ -0.36
TOP1-201ENST00000361337 CDK11AQ9UQ88 783 aaPredicted RBP12.78□□□□□ -0.36
TOP1-201ENST00000361337 RBM19Q9Y4C8 960 aaKnown RBP12.78□□□□□ -0.36
TOP1-201ENST00000361337 PHLDB1Q86UU1 1377 aa12.78□□□□□ -0.36
TOP1-201ENST00000361337 PCF11O94913 1555 aaKnown RBP12.77□□□□□ -0.37
TOP1-201ENST00000361337 SETD5Q9C0A6 1442 aa12.76□□□□□ -0.37
TOP1-201ENST00000361337 JPH4Q96JJ6 628 aa12.76□□□□□ -0.37
TOP1-201ENST00000361337 UGGT2Q9NYU1 1516 aa12.76□□□□□ -0.37
TOP1-201ENST00000361337 RTN4Q9NQC3 1192 aaKnown RBP12.75□□□□□ -0.37
TOP1-201ENST00000361337 NPM1P06748 294 aaKnown RBP eCLIP12.74□□□□□ -0.37
TOP1-201ENST00000361337 GCC2Q8IWJ2 1684 aa12.74□□□□□ -0.37
TOP1-201ENST00000361337 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.74□□□□□ -0.377e-8■■■■□ 19.3
TOP1-201ENST00000361337 NBR1Q14596 966 aa12.74□□□□□ -0.37
TOP1-201ENST00000361337 GAPVD1Q14C86 1478 aa12.73□□□□□ -0.37
TOP1-201ENST00000361337 PLEKHD1A6NEE1 506 aa12.72□□□□□ -0.37
TOP1-201ENST00000361337 MSH5O43196 834 aa12.7□□□□□ -0.38
TOP1-201ENST00000361337 AEBP2Q6ZN18 517 aaPredicted RBP12.7□□□□□ -0.38
TOP1-201ENST00000361337 IRX6P78412 446 aaPredicted RBP12.7□□□□□ -0.38
TOP1-201ENST00000361337 GRIN2BQ13224 1484 aa12.69□□□□□ -0.38
TOP1-201ENST00000361337 LRRC9Q6ZRR7 1453 aa12.69□□□□□ -0.38
TOP1-201ENST00000361337 MRC2Q9UBG0 1479 aa12.69□□□□□ -0.38
TOP1-201ENST00000361337 ANP32CO43423 234 aa12.68□□□□□ -0.38
TOP1-201ENST00000361337 RTL5Q5HYW3 569 aaPredicted RBP12.67□□□□□ -0.38
TOP1-201ENST00000361337 CCDC136Q96JN2 1154 aa12.67□□□□□ -0.38
TOP1-201ENST00000361337 CFDP1Q9UEE9 299 aaPredicted RBP12.66□□□□□ -0.38
TOP1-201ENST00000361337 FYCO1Q9BQS8 1478 aa12.65□□□□□ -0.38
TOP1-201ENST00000361337 CYB5RLQ6IPT4 315 aa12.65□□□□□ -0.38
TOP1-201ENST00000361337 ZNF608Q9ULD9 1512 aaPredicted RBP12.65□□□□□ -0.38
TOP1-201ENST00000361337 CCER2I3L3R5 266 aa12.65□□□□□ -0.38
TOP1-201ENST00000361337 KIAA0556O60303 1618 aa12.64□□□□□ -0.39
TOP1-201ENST00000361337 CEP170Q5SW79 1584 aa12.63□□□□□ -0.39
TOP1-201ENST00000361337 IQGAP2Q13576 1575 aa12.62□□□□□ -0.39
TOP1-201ENST00000361337 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.61□□□□□ -0.39
TOP1-201ENST00000361337 POLR1AO95602 1720 aaPredicted RBP12.61□□□□□ -0.39
TOP1-201ENST00000361337 TSPY4P0CV99 314 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms