RNA–Protein interactions for RNA: ENST00000361337.2

TOP1-201, Transcript of DNA topoisomerase I, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP1, Length 3,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP1-201ENST00000361337 NISCHQ9Y2I1 1504 aa18.64■□□□□ 0.57
TOP1-201ENST00000361337 CCDC180Q9P1Z9 1646 aa16.85■□□□□ 0.29
TOP1-201ENST00000361337 DCAF8L2P0C7V8 631 aa16.72■□□□□ 0.27
TOP1-201ENST00000361337 DCAF1Q9Y4B6 1507 aa16.05■□□□□ 0.16
TOP1-201ENST00000361337 SHROOM4Q9ULL8 1493 aa16■□□□□ 0.15
TOP1-201ENST00000361337 ZCCHC6Q5VYS8 1495 aaKnown RBP15.96■□□□□ 0.14
TOP1-201ENST00000361337 MYO15BQ96JP2 1530 aa15.83■□□□□ 0.13
TOP1-201ENST00000361337 SUPT5HO00267 1087 aaKnown RBP15.68■□□□□ 0.1
TOP1-201ENST00000361337 UNC13AQ9UPW8 1703 aa15.28■□□□□ 0.04
TOP1-201ENST00000361337 ABCC9O60706 1549 aa15.27■□□□□ 0.04
TOP1-201ENST00000361337 HRCP23327 699 aa15.13■□□□□ 0.01
TOP1-201ENST00000361337 NACADO15069 1562 aa15.08■□□□□ 0
TOP1-201ENST00000361337 CHIC1Q5VXU3 224 aa15.05■□□□□ 0
TOP1-201ENST00000361337 EHMT2Q96KQ7 1210 aa15.02□□□□□ -0.01
TOP1-201ENST00000361337 PCGF6Q9BYE7 350 aa15.01□□□□□ -0.01
TOP1-201ENST00000361337 PPARGC1BQ86YN6 1023 aaKnown RBP14.99□□□□□ -0.01
TOP1-201ENST00000361337 EIF4G1Q04637 1599 aaKnown RBP14.95□□□□□ -0.02
TOP1-201ENST00000361337 PABPN1Q86U42 306 aaKnown RBP eCLIP14.94□□□□□ -0.02
TOP1-201ENST00000361337 LOC105371045A0A1W2PR82 267 aa14.77□□□□□ -0.05
TOP1-201ENST00000361337 PEG3Q9GZU2 1588 aa14.77□□□□□ -0.05
TOP1-201ENST00000361337 BICRAQ9NZM4 1560 aa14.73□□□□□ -0.05
TOP1-201ENST00000361337 FAM9AQ8IZU1 332 aaPredicted RBP14.72□□□□□ -0.05
TOP1-201ENST00000361337 RB1CC1Q8TDY2 1594 aa14.66□□□□□ -0.06
TOP1-201ENST00000361337 BAZ1AQ9NRL2 1556 aaPredicted RBP14.57□□□□□ -0.08
TOP1-201ENST00000361337 SCRIBQ14160 1630 aa14.49□□□□□ -0.09
TOP1-201ENST00000361337 TRIM26Q12899 539 aaPredicted RBP14.48□□□□□ -0.09
TOP1-201ENST00000361337 PELP1Q8IZL8 1130 aaKnown RBP14.48□□□□□ -0.09
TOP1-201ENST00000361337 PRDM2Q13029 1718 aa14.45□□□□□ -0.1
TOP1-201ENST00000361337 SMARCA4P51532 1647 aa14.43□□□□□ -0.1
TOP1-201ENST00000361337 RANGAP1P46060 587 aaPredicted RBP14.39□□□□□ -0.11
TOP1-201ENST00000361337 TRIM41Q8WV44 630 aa14.39□□□□□ -0.11
TOP1-201ENST00000361337 TTBK1Q5TCY1 1321 aaPredicted RBP14.31□□□□□ -0.12
TOP1-201ENST00000361337 RSF1Q96T23 1441 aaPredicted RBP14.29□□□□□ -0.12
TOP1-201ENST00000361337 WIZO95785 1651 aa14.29□□□□□ -0.12
TOP1-201ENST00000361337 TOP2AP11388 1531 aaKnown RBP14.27□□□□□ -0.13
TOP1-201ENST00000361337 MROH2BQ7Z745 1585 aa14.26□□□□□ -0.13
TOP1-201ENST00000361337 SCAF1Q9H7N4 1312 aaKnown RBP14.25□□□□□ -0.13
TOP1-201ENST00000361337 SMARCA2P51531 1590 aa14.23□□□□□ -0.13
TOP1-201ENST00000361337 ZEB1P37275 1124 aaPredicted RBP14.18□□□□□ -0.14
TOP1-201ENST00000361337 CECR2Q9BXF3 1484 aa14.1□□□□□ -0.15
TOP1-201ENST00000361337 HMGXB3Q12766 1538 aa14.09□□□□□ -0.15
TOP1-201ENST00000361337 UBTFP17480 764 aaKnown RBP14.04□□□□□ -0.16
TOP1-201ENST00000361337 BIVM-ERCC5R4GMW8 1640 aa14.03□□□□□ -0.16
TOP1-201ENST00000361337 MYT1Q01538 1121 aa14.03□□□□□ -0.16
TOP1-201ENST00000361337 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.02□□□□□ -0.17
TOP1-201ENST00000361337 NEUROD1Q13562 356 aa13.95□□□□□ -0.18
TOP1-201ENST00000361337 ATP1B4Q9UN42 357 aaPredicted RBP13.92□□□□□ -0.18
TOP1-201ENST00000361337 YTHDC1Q96MU7 727 aaKnown RBP13.91□□□□□ -0.18
TOP1-201ENST00000361337 CCER1Q8TC90 406 aaPredicted RBP13.9□□□□□ -0.18
TOP1-201ENST00000361337 ACIN1Q9UKV3 1341 aaKnown RBP13.89□□□□□ -0.19
TOP1-201ENST00000361337 WDR97A6NE52 1622 aa13.86□□□□□ -0.19
TOP1-201ENST00000361337 GTF3C3Q9Y5Q9 886 aa13.82□□□□□ -0.2
TOP1-201ENST00000361337 DIEXFQ68CQ4 756 aaKnown RBP13.8□□□□□ -0.2
TOP1-201ENST00000361337 CENPBP07199 599 aaPredicted RBP13.77□□□□□ -0.2
TOP1-201ENST00000361337 ATAD2BQ9ULI0 1458 aa13.77□□□□□ -0.21
TOP1-201ENST00000361337 APLP2Q06481 763 aa13.75□□□□□ -0.21
TOP1-201ENST00000361337 NCAPD3P42695 1498 aa13.75□□□□□ -0.21
TOP1-201ENST00000361337 CCDC88BA6NC98 1476 aa13.75□□□□□ -0.21
TOP1-201ENST00000361337 TOP2BQ02880 1626 aa13.73□□□□□ -0.21
TOP1-201ENST00000361337 KIF21BO75037 1637 aa13.68□□□□□ -0.22
TOP1-201ENST00000361337 SYNJ1O43426 1573 aa13.66□□□□□ -0.22
TOP1-201ENST00000361337 FBLN2P98095 1184 aa13.65□□□□□ -0.22
TOP1-201ENST00000361337 ABCC8Q09428 1581 aa13.64□□□□□ -0.23
TOP1-201ENST00000361337 DNAJC5BQ9UF47 199 aa13.63□□□□□ -0.23
TOP1-201ENST00000361337 P3H3Q8IVL6 736 aa13.61□□□□□ -0.23
TOP1-201ENST00000361337 CEP162Q5TB80 1403 aa13.61□□□□□ -0.23
TOP1-201ENST00000361337 BAZ1BQ9UIG0 1483 aaKnown RBP13.61□□□□□ -0.23
TOP1-201ENST00000361337 SOGA1O94964 1423 aa13.6□□□□□ -0.23
TOP1-201ENST00000361337 WRNQ14191 1432 aaPredicted RBP eCLIP13.57□□□□□ -0.241e-6■■■■■ 58.5
TOP1-201ENST00000361337 ARID3CA6NKF2 412 aa13.56□□□□□ -0.24
TOP1-201ENST00000361337 CSRNP3Q8WYN3 585 aa13.56□□□□□ -0.24
TOP1-201ENST00000361337 ZNF316A6NFI3 1004 aaPredicted RBP13.56□□□□□ -0.24
TOP1-201ENST00000361337 ITGAEP38570 1179 aa13.56□□□□□ -0.24
TOP1-201ENST00000361337 RUSC2Q8N2Y8 1516 aa13.55□□□□□ -0.24
TOP1-201ENST00000361337 MIER1Q8N108 512 aa13.53□□□□□ -0.24
TOP1-201ENST00000361337 HNRNPUL2Q1KMD3 747 aaKnown RBP13.52□□□□□ -0.25
TOP1-201ENST00000361337 CFTRP13569 1480 aa13.5□□□□□ -0.25
TOP1-201ENST00000361337 TNIKQ9UKE5 1360 aa13.49□□□□□ -0.25
TOP1-201ENST00000361337 CC2D2AQ9P2K1 1620 aa13.47□□□□□ -0.25
TOP1-201ENST00000361337 ERICH3Q5RHP9 1530 aa13.44□□□□□ -0.26
TOP1-201ENST00000361337 CUX1P39880 1505 aa13.4□□□□□ -0.26
TOP1-201ENST00000361337 ABCA5Q8WWZ7 1642 aa13.4□□□□□ -0.26
TOP1-201ENST00000361337 ERICH6Q7L0X2 663 aa13.37□□□□□ -0.27
TOP1-201ENST00000361337 LAMC3Q9Y6N6 1575 aa13.36□□□□□ -0.27
TOP1-201ENST00000361337 GOLGA3Q08378 1498 aa13.34□□□□□ -0.27
TOP1-201ENST00000361337 KIF21AQ7Z4S6 1674 aa13.34□□□□□ -0.27
TOP1-201ENST00000361337 EEA1Q15075 1411 aa13.33□□□□□ -0.28
TOP1-201ENST00000361337 TARBP1Q13395 1621 aaKnown RBP13.32□□□□□ -0.28
TOP1-201ENST00000361337 LRRIQ1Q96JM4 1722 aa13.31□□□□□ -0.28
TOP1-201ENST00000361337 CTTNBP2Q8WZ74 1663 aa13.3□□□□□ -0.28
TOP1-201ENST00000361337 CLIP1P30622 1438 aa13.27□□□□□ -0.29
TOP1-201ENST00000361337 DNMBPQ6XZF7 1577 aa13.26□□□□□ -0.29
TOP1-201ENST00000361337 PRXQ9BXM0 1461 aa13.26□□□□□ -0.29
TOP1-201ENST00000361337 BCANQ96GW7 911 aa13.25□□□□□ -0.29
TOP1-201ENST00000361337 CFAP43Q8NDM7 1665 aa13.25□□□□□ -0.29
TOP1-201ENST00000361337 BCL11AQ9H165 835 aa13.24□□□□□ -0.29
TOP1-201ENST00000361337 CUL7Q14999 1698 aa13.24□□□□□ -0.29
TOP1-201ENST00000361337 TDRD9Q8NDG6 1382 aaKnown RBP13.23□□□□□ -0.29
TOP1-201ENST00000361337 PBRM1Q86U86 1689 aa13.23□□□□□ -0.29
TOP1-201ENST00000361337 FAM50AQ14320 339 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms