RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 NUP160Q12769 1436 aa6.61□□□□□ -1.35
LIG4-201ENST00000356922 KIF21BO75037 1637 aa6.6□□□□□ -1.35
LIG4-201ENST00000356922 JPH4Q96JJ6 628 aa6.59□□□□□ -1.35
LIG4-201ENST00000356922 ERCC6L2Q5T890 1561 aa6.59□□□□□ -1.35
LIG4-201ENST00000356922 P3H3Q8IVL6 736 aa6.59□□□□□ -1.35
LIG4-201ENST00000356922 GOLGA3Q08378 1498 aa6.58□□□□□ -1.36
LIG4-201ENST00000356922 CLASP1Q7Z460 1538 aa6.57□□□□□ -1.36
LIG4-201ENST00000356922 KIAA0586Q9BVV6 1533 aa6.57□□□□□ -1.36
LIG4-201ENST00000356922 TTBK1Q5TCY1 1321 aaPredicted RBP6.57□□□□□ -1.36
LIG4-201ENST00000356922 TNIKQ9UKE5 1360 aa6.55□□□□□ -1.36
LIG4-201ENST00000356922 DNAJC5Q9H3Z4 198 aa6.55□□□□□ -1.36
LIG4-201ENST00000356922 PRG4Q92954 1404 aaPredicted RBP6.55□□□□□ -1.36
LIG4-201ENST00000356922 DISP1Q96F81 1524 aa6.55□□□□□ -1.36
LIG4-201ENST00000356922 IQGAP2Q13576 1575 aa6.54□□□□□ -1.36
LIG4-201ENST00000356922 CTTNBP2Q8WZ74 1663 aa6.53□□□□□ -1.36
LIG4-201ENST00000356922 ARHGAP35Q9NRY4 1499 aa6.52□□□□□ -1.37
LIG4-201ENST00000356922 SHROOM2Q13796 1616 aa6.52□□□□□ -1.37
LIG4-201ENST00000356922 CEP162Q5TB80 1403 aa6.52□□□□□ -1.37
LIG4-201ENST00000356922 ARAP1Q96P48 1450 aa6.52□□□□□ -1.37
LIG4-201ENST00000356922 FHOD3Q2V2M9 1422 aa6.51□□□□□ -1.37
LIG4-201ENST00000356922 CYB5RLQ6IPT4 315 aa6.51□□□□□ -1.37
LIG4-201ENST00000356922 ARHGEF11O15085 1522 aa6.51□□□□□ -1.37
LIG4-201ENST00000356922 UGGT2Q9NYU1 1516 aa6.51□□□□□ -1.37
LIG4-201ENST00000356922 CLIP1P30622 1438 aa6.5□□□□□ -1.37
LIG4-201ENST00000356922 ARID3CA6NKF2 412 aa6.5□□□□□ -1.37
LIG4-201ENST00000356922 RIMBP3CA6NJZ7 1639 aa6.49□□□□□ -1.37
LIG4-201ENST00000356922 RIMBP3BA6NNM3 1639 aa6.49□□□□□ -1.37
LIG4-201ENST00000356922 RIMBP3Q9UFD9 1639 aa6.49□□□□□ -1.37
LIG4-201ENST00000356922 SAMD9Q5K651 1589 aa6.49□□□□□ -1.37
LIG4-201ENST00000356922 KIAA0556O60303 1618 aa6.48□□□□□ -1.37
LIG4-201ENST00000356922 PLB1Q6P1J6 1458 aa6.48□□□□□ -1.37
LIG4-201ENST00000356922 PTPRGP23470 1445 aa6.47□□□□□ -1.37
LIG4-201ENST00000356922 CARMIL2Q6F5E8 1435 aa6.46□□□□□ -1.38
LIG4-201ENST00000356922 ATP1B4Q9UN42 357 aaPredicted RBP6.45□□□□□ -1.38
LIG4-201ENST00000356922 PPARGC1BQ86YN6 1023 aaKnown RBP6.45□□□□□ -1.38
LIG4-201ENST00000356922 EFCAB5A4FU69 1503 aa6.43□□□□□ -1.38
LIG4-201ENST00000356922 ADCY10Q96PN6 1610 aa6.42□□□□□ -1.38
LIG4-201ENST00000356922 NUP153P49790 1475 aaKnown RBP6.42□□□□□ -1.38
LIG4-201ENST00000356922 UACAQ9BZF9 1416 aa6.42□□□□□ -1.38
LIG4-201ENST00000356922 ABCA8O94911 1581 aa6.42□□□□□ -1.38
LIG4-201ENST00000356922 LRRIQ1Q96JM4 1722 aa6.42□□□□□ -1.38
LIG4-201ENST00000356922 KANK4Q5T7N3 995 aaPredicted RBP6.41□□□□□ -1.38
LIG4-201ENST00000356922 ATP10BO94823 1461 aa6.41□□□□□ -1.38
LIG4-201ENST00000356922 PCF11O94913 1555 aaKnown RBP6.41□□□□□ -1.38
LIG4-201ENST00000356922 VPS8Q8N3P4 1428 aa6.41□□□□□ -1.38
LIG4-201ENST00000356922 CDK13Q14004 1512 aaKnown RBP6.4□□□□□ -1.38
LIG4-201ENST00000356922 FMN1Q68DA7 1419 aa6.4□□□□□ -1.39
LIG4-201ENST00000356922 CASKIN1Q8WXD9 1431 aa6.39□□□□□ -1.39
LIG4-201ENST00000356922 RAPGEF6Q8TEU7 1601 aa6.39□□□□□ -1.39
LIG4-201ENST00000356922 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.39□□□□□ -1.39
LIG4-201ENST00000356922 HNRNPUL2Q1KMD3 747 aaKnown RBP6.39□□□□□ -1.39
LIG4-201ENST00000356922 ABCC2Q92887 1545 aa6.39□□□□□ -1.39
LIG4-201ENST00000356922 MAGI3Q5TCQ9 1506 aa6.38□□□□□ -1.39
LIG4-201ENST00000356922 EPRSP07814 1512 aaKnown RBP6.38□□□□□ -1.39
LIG4-201ENST00000356922 KDM5BQ9UGL1 1544 aa6.37□□□□□ -1.39
LIG4-201ENST00000356922 KCNH8Q96L42 1107 aa6.37□□□□□ -1.39
LIG4-201ENST00000356922 UHRF1BP1LA0JNW5 1464 aa6.37□□□□□ -1.39
LIG4-201ENST00000356922 FYCO1Q9BQS8 1478 aa6.36□□□□□ -1.39
LIG4-201ENST00000356922 ZCCHC11Q5TAX3 1644 aaKnown RBP6.36□□□□□ -1.39
LIG4-201ENST00000356922 ASXL2Q76L83 1435 aa6.35□□□□□ -1.39
LIG4-201ENST00000356922 NPM1P06748 294 aaKnown RBP eCLIP6.34□□□□□ -1.4
LIG4-201ENST00000356922 PLEKHD1A6NEE1 506 aa6.33□□□□□ -1.4
LIG4-201ENST00000356922 HECW1Q76N89 1606 aa6.33□□□□□ -1.4
LIG4-201ENST00000356922 TIAM1Q13009 1591 aa6.32□□□□□ -1.4
LIG4-201ENST00000356922 KIF14Q15058 1648 aa6.32□□□□□ -1.4
LIG4-201ENST00000356922 LRRC9Q6ZRR7 1453 aa6.32□□□□□ -1.4
LIG4-201ENST00000356922 FAM69CQ0P6D2 419 aa6.32□□□□□ -1.4
LIG4-201ENST00000356922 WDR7Q9Y4E6 1490 aa6.31□□□□□ -1.4
LIG4-201ENST00000356922 MTUS2Q5JR59 1369 aa6.3□□□□□ -1.4
LIG4-201ENST00000356922 MAPKBP1O60336 1514 aa6.3□□□□□ -1.4
LIG4-201ENST00000356922 TROQ12816 1431 aaPredicted RBP6.3□□□□□ -1.4
LIG4-201ENST00000356922 ZNF644Q9H582 1327 aaPredicted RBP6.3□□□□□ -1.4
LIG4-201ENST00000356922 TRHP20396 242 aaPredicted RBP6.3□□□□□ -1.4
LIG4-201ENST00000356922 CCDC18Q5T9S5 1454 aa6.3□□□□□ -1.4
LIG4-201ENST00000356922 PHLDB1Q86UU1 1377 aa6.3□□□□□ -1.4
LIG4-201ENST00000356922 APLP2Q06481 763 aa6.3□□□□□ -1.4
LIG4-201ENST00000356922 CFAP43Q8NDM7 1665 aa6.29□□□□□ -1.4
LIG4-201ENST00000356922 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.29□□□□□ -1.4
LIG4-201ENST00000356922 ABCC10Q5T3U5 1492 aa6.29□□□□□ -1.4
LIG4-201ENST00000356922 TTC37Q6PGP7 1564 aa6.29□□□□□ -1.4
LIG4-201ENST00000356922 MAP3K1Q13233 1512 aa6.29□□□□□ -1.4
LIG4-201ENST00000356922 CDK11AQ9UQ88 783 aaPredicted RBP6.28□□□□□ -1.4
LIG4-201ENST00000356922 NCOA2Q15596 1464 aa6.28□□□□□ -1.4
LIG4-201ENST00000356922 PHF23Q9BUL5 403 aaPredicted RBP6.28□□□□□ -1.4
LIG4-201ENST00000356922 DIP2BQ9P265 1576 aa6.28□□□□□ -1.4
LIG4-201ENST00000356922 KIF13AQ9H1H9 1805 aa6.28□□□□□ -1.4
LIG4-201ENST00000356922 GPATCH8Q9UKJ3 1502 aaKnown RBP6.27□□□□□ -1.41
LIG4-201ENST00000356922 CD109Q6YHK3 1445 aa6.26□□□□□ -1.41
LIG4-201ENST00000356922 ZNF777Q9ULD5 760 aaPredicted RBP6.26□□□□□ -1.41
LIG4-201ENST00000356922 TSPOAP1O95153 1857 aa6.26□□□□□ -1.41
LIG4-201ENST00000356922 COL17A1Q9UMD9 1497 aaPredicted RBP6.25□□□□□ -1.41
LIG4-201ENST00000356922 EHBP1L1Q8N3D4 1523 aa6.25□□□□□ -1.41
LIG4-201ENST00000356922 ABCA9Q8IUA7 1624 aa6.25□□□□□ -1.41
LIG4-201ENST00000356922 PPRC1Q5VV67 1664 aaKnown RBP6.24□□□□□ -1.41
LIG4-201ENST00000356922 HNRNPMP52272 730 aaKnown RBP eCLIP6.24□□□□□ -1.41
LIG4-201ENST00000356922 CDC42BPBQ9Y5S2 1711 aa6.24□□□□□ -1.41
LIG4-201ENST00000356922 ARHGEF12Q9NZN5 1544 aa6.24□□□□□ -1.41
LIG4-201ENST00000356922 PLCH2O75038 1416 aa6.24□□□□□ -1.41
LIG4-201ENST00000356922 CDC42BPAQ5VT25 1732 aa6.24□□□□□ -1.41
LIG4-201ENST00000356922 RAPGEF3O95398 923 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms