RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 NISCHQ9Y2I1 1504 aa9.57□□□□□ -0.88
LIG4-201ENST00000356922 CCDC180Q9P1Z9 1646 aa8.34□□□□□ -1.07
LIG4-201ENST00000356922 ABCC9O60706 1549 aa8.19□□□□□ -1.1
LIG4-201ENST00000356922 DCAF8L2P0C7V8 631 aa8.04□□□□□ -1.12
LIG4-201ENST00000356922 ZCCHC6Q5VYS8 1495 aaKnown RBP7.99□□□□□ -1.13
LIG4-201ENST00000356922 DCAF1Q9Y4B6 1507 aa7.85□□□□□ -1.15
LIG4-201ENST00000356922 NACADO15069 1562 aa7.84□□□□□ -1.15
LIG4-201ENST00000356922 RB1CC1Q8TDY2 1594 aa7.82□□□□□ -1.16
LIG4-201ENST00000356922 MYO15BQ96JP2 1530 aa7.81□□□□□ -1.16
LIG4-201ENST00000356922 SHROOM4Q9ULL8 1493 aa7.76□□□□□ -1.17
LIG4-201ENST00000356922 PABPN1Q86U42 306 aaKnown RBP eCLIP7.74□□□□□ -1.17
LIG4-201ENST00000356922 SCRIBQ14160 1630 aa7.74□□□□□ -1.17
LIG4-201ENST00000356922 UNC13AQ9UPW8 1703 aa7.71□□□□□ -1.18
LIG4-201ENST00000356922 BICRAQ9NZM4 1560 aa7.67□□□□□ -1.18
LIG4-201ENST00000356922 CECR2Q9BXF3 1484 aa7.52□□□□□ -1.2
LIG4-201ENST00000356922 DNAJC5BQ9UF47 199 aa7.51□□□□□ -1.21
LIG4-201ENST00000356922 MROH2BQ7Z745 1585 aa7.43□□□□□ -1.22
LIG4-201ENST00000356922 EIF4G1Q04637 1599 aaKnown RBP7.42□□□□□ -1.22
LIG4-201ENST00000356922 RSF1Q96T23 1441 aaPredicted RBP7.39□□□□□ -1.23
LIG4-201ENST00000356922 SMARCA4P51532 1647 aa7.38□□□□□ -1.23
LIG4-201ENST00000356922 CC2D2AQ9P2K1 1620 aa7.37□□□□□ -1.23
LIG4-201ENST00000356922 SUPT5HO00267 1087 aaKnown RBP7.37□□□□□ -1.23
LIG4-201ENST00000356922 BAZ1AQ9NRL2 1556 aaPredicted RBP7.36□□□□□ -1.23
LIG4-201ENST00000356922 WIZO95785 1651 aa7.34□□□□□ -1.23
LIG4-201ENST00000356922 ATAD2BQ9ULI0 1458 aa7.33□□□□□ -1.24
LIG4-201ENST00000356922 NCAPD3P42695 1498 aa7.28□□□□□ -1.24
LIG4-201ENST00000356922 PEG3Q9GZU2 1588 aa7.28□□□□□ -1.24
LIG4-201ENST00000356922 SMARCA2P51531 1590 aa7.25□□□□□ -1.25
LIG4-201ENST00000356922 BAZ1BQ9UIG0 1483 aaKnown RBP7.25□□□□□ -1.25
LIG4-201ENST00000356922 HMGXB3Q12766 1538 aa7.21□□□□□ -1.25
LIG4-201ENST00000356922 TOP2AP11388 1531 aaKnown RBP7.2□□□□□ -1.26
LIG4-201ENST00000356922 CHIC1Q5VXU3 224 aa7.2□□□□□ -1.26
LIG4-201ENST00000356922 CCDC88BA6NC98 1476 aa7.19□□□□□ -1.26
LIG4-201ENST00000356922 NESP48681 1621 aa7.16□□□□□ -1.26
LIG4-201ENST00000356922 AEBP2Q6ZN18 517 aaPredicted RBP7.11□□□□□ -1.27
LIG4-201ENST00000356922 CADPSQ9ULU8 1353 aa7.1□□□□□ -1.27
LIG4-201ENST00000356922 CFTRP13569 1480 aa7.08□□□□□ -1.28
LIG4-201ENST00000356922 LAMC3Q9Y6N6 1575 aa7.02□□□□□ -1.29
LIG4-201ENST00000356922 FANCD2Q9BXW9 1451 aa7.01□□□□□ -1.29
LIG4-201ENST00000356922 KIF21AQ7Z4S6 1674 aa7□□□□□ -1.29
LIG4-201ENST00000356922 ABCC8Q09428 1581 aa6.99□□□□□ -1.29
LIG4-201ENST00000356922 PDS5BQ9NTI5 1447 aa6.99□□□□□ -1.29
LIG4-201ENST00000356922 ERCC6Q03468 1493 aa6.97□□□□□ -1.29
LIG4-201ENST00000356922 URB2Q14146 1524 aaKnown RBP6.96□□□□□ -1.3
LIG4-201ENST00000356922 CEP164Q9UPV0 1460 aa6.95□□□□□ -1.3
LIG4-201ENST00000356922 PRDM2Q13029 1718 aa6.94□□□□□ -1.3
LIG4-201ENST00000356922 CUX1P39880 1505 aa6.94□□□□□ -1.3
LIG4-201ENST00000356922 THOC2Q8NI27 1593 aaKnown RBP6.93□□□□□ -1.3
LIG4-201ENST00000356922 SYNJ1O43426 1573 aa6.92□□□□□ -1.3
LIG4-201ENST00000356922 WRNQ14191 1432 aaPredicted RBP eCLIP6.92□□□□□ -1.3
LIG4-201ENST00000356922 TOPBP1Q92547 1522 aa6.91□□□□□ -1.3
LIG4-201ENST00000356922 MRC2Q9UBG0 1479 aa6.91□□□□□ -1.3
LIG4-201ENST00000356922 CUX2O14529 1486 aa6.89□□□□□ -1.31
LIG4-201ENST00000356922 RAD54L2Q9Y4B4 1467 aa6.89□□□□□ -1.31
LIG4-201ENST00000356922 WDR62O43379 1518 aa6.89□□□□□ -1.31
LIG4-201ENST00000356922 TRIM41Q8WV44 630 aa6.89□□□□□ -1.31
LIG4-201ENST00000356922 POLA1P09884 1462 aaPredicted RBP6.88□□□□□ -1.31
LIG4-201ENST00000356922 FGD5Q6ZNL6 1462 aa6.88□□□□□ -1.31
LIG4-201ENST00000356922 DNMBPQ6XZF7 1577 aa6.87□□□□□ -1.31
LIG4-201ENST00000356922 TOP2BQ02880 1626 aa6.87□□□□□ -1.31
LIG4-201ENST00000356922 ZNF608Q9ULD9 1512 aaPredicted RBP6.86□□□□□ -1.31
LIG4-201ENST00000356922 RUSC2Q8N2Y8 1516 aa6.85□□□□□ -1.31
LIG4-201ENST00000356922 SOGA1O94964 1423 aa6.85□□□□□ -1.31
LIG4-201ENST00000356922 TDRD9Q8NDG6 1382 aaKnown RBP6.85□□□□□ -1.31
LIG4-201ENST00000356922 BIVM-ERCC5R4GMW8 1640 aa6.85□□□□□ -1.31
LIG4-201ENST00000356922 AQRO60306 1485 aaKnown RBP eCLIP6.83□□□□□ -1.32
LIG4-201ENST00000356922 TARBP1Q13395 1621 aaKnown RBP6.83□□□□□ -1.32
LIG4-201ENST00000356922 FAM9AQ8IZU1 332 aaPredicted RBP6.82□□□□□ -1.32
LIG4-201ENST00000356922 IFT140Q96RY7 1462 aa6.79□□□□□ -1.32
LIG4-201ENST00000356922 ABCA10Q8WWZ4 1543 aa6.79□□□□□ -1.32
LIG4-201ENST00000356922 EHMT2Q96KQ7 1210 aa6.78□□□□□ -1.32
LIG4-201ENST00000356922 WDR97A6NE52 1622 aa6.77□□□□□ -1.33
LIG4-201ENST00000356922 IGF1RP08069 1367 aa6.77□□□□□ -1.33
LIG4-201ENST00000356922 EIF4G3O43432 1585 aaKnown RBP6.76□□□□□ -1.33
LIG4-201ENST00000356922 GAPVD1Q14C86 1478 aa6.76□□□□□ -1.33
LIG4-201ENST00000356922 ABCA5Q8WWZ7 1642 aa6.75□□□□□ -1.33
LIG4-201ENST00000356922 KIF27Q86VH2 1401 aa6.73□□□□□ -1.33
LIG4-201ENST00000356922 LOC105371045A0A1W2PR82 267 aa6.73□□□□□ -1.33
LIG4-201ENST00000356922 CSRNP3Q8WYN3 585 aa6.73□□□□□ -1.33
LIG4-201ENST00000356922 FBLN2P98095 1184 aa6.72□□□□□ -1.33
LIG4-201ENST00000356922 SNAPC4Q5SXM2 1469 aa6.72□□□□□ -1.33
LIG4-201ENST00000356922 GRIN2BQ13224 1484 aa6.71□□□□□ -1.33
LIG4-201ENST00000356922 CARMIL1Q5VZK9 1371 aa6.7□□□□□ -1.34
LIG4-201ENST00000356922 PBRM1Q86U86 1689 aa6.69□□□□□ -1.34
LIG4-201ENST00000356922 ERICH3Q5RHP9 1530 aa6.68□□□□□ -1.34
LIG4-201ENST00000356922 CHMP7Q8WUX9 453 aaPredicted RBP6.68□□□□□ -1.34
LIG4-201ENST00000356922 RAPGEF2Q9Y4G8 1499 aa6.68□□□□□ -1.34
LIG4-201ENST00000356922 PRXQ9BXM0 1461 aa6.68□□□□□ -1.34
LIG4-201ENST00000356922 FHAD1B1AJZ9 1412 aa6.66□□□□□ -1.34
LIG4-201ENST00000356922 ADAMTS12P58397 1594 aa6.66□□□□□ -1.34
LIG4-201ENST00000356922 MAGI1Q96QZ7 1491 aaPredicted RBP6.66□□□□□ -1.34
LIG4-201ENST00000356922 SYNJ2O15056 1496 aa6.66□□□□□ -1.34
LIG4-201ENST00000356922 CHD1O14646 1710 aa6.65□□□□□ -1.35
LIG4-201ENST00000356922 RANGAP1P46060 587 aaPredicted RBP6.65□□□□□ -1.35
LIG4-201ENST00000356922 GRIN2AQ12879 1464 aa6.65□□□□□ -1.35
LIG4-201ENST00000356922 EEA1Q15075 1411 aa6.64□□□□□ -1.35
LIG4-201ENST00000356922 CEP170Q5SW79 1584 aa6.63□□□□□ -1.35
LIG4-201ENST00000356922 OSCARQ8IYS5 282 aa6.63□□□□□ -1.35
LIG4-201ENST00000356922 UBTFP17480 764 aaKnown RBP6.62□□□□□ -1.35
LIG4-201ENST00000356922 CUL7Q14999 1698 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms