RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 CTTNBP2Q8WZ74 1663 aa30.87■■■□□ 2.53
CHMP4A-201ENST00000347519 NUP160Q12769 1436 aa30.86■■■□□ 2.53
CHMP4A-201ENST00000347519 TNIKQ9UKE5 1360 aa30.85■■■□□ 2.53
CHMP4A-201ENST00000347519 OSCARQ8IYS5 282 aa30.8■■■□□ 2.52
CHMP4A-201ENST00000347519 KIAA0586Q9BVV6 1533 aa30.74■■■□□ 2.51
CHMP4A-201ENST00000347519 IQGAP2Q13576 1575 aa30.72■■■□□ 2.51
CHMP4A-201ENST00000347519 CLASP1Q7Z460 1538 aa30.68■■■□□ 2.5
CHMP4A-201ENST00000347519 RANGAP1P46060 587 aaPredicted RBP30.68■■■□□ 2.5
CHMP4A-201ENST00000347519 CEP162Q5TB80 1403 aa30.65■■■□□ 2.5
CHMP4A-201ENST00000347519 UGGT2Q9NYU1 1516 aa30.58■■■□□ 2.49
CHMP4A-201ENST00000347519 CLIP1P30622 1438 aa30.56■■■□□ 2.48
CHMP4A-201ENST00000347519 JPH4Q96JJ6 628 aa30.55■■■□□ 2.48
CHMP4A-201ENST00000347519 SHROOM2Q13796 1616 aa30.55■■■□□ 2.48
CHMP4A-201ENST00000347519 ARHGAP35Q9NRY4 1499 aa30.52■■■□□ 2.48
CHMP4A-201ENST00000347519 SAMD9Q5K651 1589 aa30.51■■■□□ 2.48
CHMP4A-201ENST00000347519 DISP1Q96F81 1524 aa30.48■■■□□ 2.47
CHMP4A-201ENST00000347519 P3H3Q8IVL6 736 aa30.46■■■□□ 2.47
CHMP4A-201ENST00000347519 EFCAB5A4FU69 1503 aa30.46■■■□□ 2.47
CHMP4A-201ENST00000347519 KIAA0556O60303 1618 aa30.44■■■□□ 2.46
CHMP4A-201ENST00000347519 ERCC6L2Q5T890 1561 aa30.44■■■□□ 2.46
CHMP4A-201ENST00000347519 PRG4Q92954 1404 aaPredicted RBP30.43■■■□□ 2.46
CHMP4A-201ENST00000347519 ARAP1Q96P48 1450 aa30.43■■■□□ 2.46
CHMP4A-201ENST00000347519 RIMBP3CA6NJZ7 1639 aa30.42■■■□□ 2.46
CHMP4A-201ENST00000347519 RIMBP3BA6NNM3 1639 aa30.42■■■□□ 2.46
CHMP4A-201ENST00000347519 RIMBP3Q9UFD9 1639 aa30.42■■■□□ 2.46
CHMP4A-201ENST00000347519 FHOD3Q2V2M9 1422 aa30.4■■■□□ 2.46
CHMP4A-201ENST00000347519 CARMIL2Q6F5E8 1435 aa30.33■■■□□ 2.45
CHMP4A-201ENST00000347519 ARHGEF11O15085 1522 aa30.27■■■□□ 2.44
CHMP4A-201ENST00000347519 TTBK1Q5TCY1 1321 aaPredicted RBP30.23■■■□□ 2.43
CHMP4A-201ENST00000347519 VPS8Q8N3P4 1428 aa30.2■■■□□ 2.43
CHMP4A-201ENST00000347519 PTPRGP23470 1445 aa30.15■■■□□ 2.42
CHMP4A-201ENST00000347519 FMN1Q68DA7 1419 aa30.14■■■□□ 2.42
CHMP4A-201ENST00000347519 PCF11O94913 1555 aaKnown RBP30.13■■■□□ 2.41
CHMP4A-201ENST00000347519 PLB1Q6P1J6 1458 aa30.08■■■□□ 2.41
CHMP4A-201ENST00000347519 ABCA8O94911 1581 aa30.06■■■□□ 2.4
CHMP4A-201ENST00000347519 CASKIN1Q8WXD9 1431 aa30.05■■■□□ 2.4
CHMP4A-201ENST00000347519 RAPGEF6Q8TEU7 1601 aa30.05■■■□□ 2.4
CHMP4A-201ENST00000347519 LRRIQ1Q96JM4 1722 aa30.02■■■□□ 2.4
CHMP4A-201ENST00000347519 CYB5RLQ6IPT4 315 aa30.02■■■□□ 2.4
CHMP4A-201ENST00000347519 FYCO1Q9BQS8 1478 aa30.01■■■□□ 2.39
CHMP4A-201ENST00000347519 ATP1B4Q9UN42 357 aaPredicted RBP29.98■■■□□ 2.39
CHMP4A-201ENST00000347519 UACAQ9BZF9 1416 aa29.98■■■□□ 2.39
CHMP4A-201ENST00000347519 HECW1Q76N89 1606 aa29.96■■■□□ 2.39
CHMP4A-201ENST00000347519 NUP153P49790 1475 aaKnown RBP29.95■■■□□ 2.39
CHMP4A-201ENST00000347519 ABCC2Q92887 1545 aa29.93■■■□□ 2.38
CHMP4A-201ENST00000347519 ADCY10Q96PN6 1610 aa29.91■■■□□ 2.38
CHMP4A-201ENST00000347519 ARID3CA6NKF2 412 aa29.9■■■□□ 2.38
CHMP4A-201ENST00000347519 UHRF1BP1LA0JNW5 1464 aa29.89■■■□□ 2.38
CHMP4A-201ENST00000347519 EPRSP07814 1512 aaKnown RBP29.87■■■□□ 2.37
CHMP4A-201ENST00000347519 CDK13Q14004 1512 aaKnown RBP29.87■■■□□ 2.37
CHMP4A-201ENST00000347519 CFAP43Q8NDM7 1665 aa29.84■■■□□ 2.37
CHMP4A-201ENST00000347519 TIAM1Q13009 1591 aa29.83■■■□□ 2.37
CHMP4A-201ENST00000347519 ATP10BO94823 1461 aa29.83■■■□□ 2.37
CHMP4A-201ENST00000347519 CCDC18Q5T9S5 1454 aa29.79■■■□□ 2.36
CHMP4A-201ENST00000347519 MAP3K1Q13233 1512 aa29.79■■■□□ 2.36
CHMP4A-201ENST00000347519 ZCCHC11Q5TAX3 1644 aaKnown RBP29.77■■■□□ 2.36
CHMP4A-201ENST00000347519 PPARGC1BQ86YN6 1023 aaKnown RBP29.77■■■□□ 2.36
CHMP4A-201ENST00000347519 KDM5BQ9UGL1 1544 aa29.76■■■□□ 2.35
CHMP4A-201ENST00000347519 APLP2Q06481 763 aa29.76■■■□□ 2.35
CHMP4A-201ENST00000347519 KANK4Q5T7N3 995 aaPredicted RBP29.75■■■□□ 2.35
CHMP4A-201ENST00000347519 MAGI3Q5TCQ9 1506 aa29.74■■■□□ 2.35
CHMP4A-201ENST00000347519 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.7■■■□□ 2.35
CHMP4A-201ENST00000347519 HNRNPUL2Q1KMD3 747 aaKnown RBP29.7■■■□□ 2.35
CHMP4A-201ENST00000347519 LRRC9Q6ZRR7 1453 aa29.68■■■□□ 2.34
CHMP4A-201ENST00000347519 TRHP20396 242 aaPredicted RBP29.64■■■□□ 2.33
CHMP4A-201ENST00000347519 MTUS2Q5JR59 1369 aa29.6■■■□□ 2.33
CHMP4A-201ENST00000347519 EHBP1L1Q8N3D4 1523 aa29.59■■■□□ 2.33
CHMP4A-201ENST00000347519 NPM1P06748 294 aaKnown RBP eCLIP29.57■■■□□ 2.32
CHMP4A-201ENST00000347519 TROQ12816 1431 aaPredicted RBP29.57■■■□□ 2.32
CHMP4A-201ENST00000347519 PLEKHD1A6NEE1 506 aa29.55■■■□□ 2.32
CHMP4A-201ENST00000347519 CDK11AQ9UQ88 783 aaPredicted RBP29.55■■■□□ 2.32
CHMP4A-201ENST00000347519 ASXL2Q76L83 1435 aa29.53■■■□□ 2.32
CHMP4A-201ENST00000347519 KIF14Q15058 1648 aa29.52■■■□□ 2.32
CHMP4A-201ENST00000347519 SUPT6HQ7KZ85 1726 aaKnown RBP29.49■■■□□ 2.31
CHMP4A-201ENST00000347519 WDR7Q9Y4E6 1490 aa29.49■■■□□ 2.31
CHMP4A-201ENST00000347519 MAPKBP1O60336 1514 aa29.48■■■□□ 2.31
CHMP4A-201ENST00000347519 NCOA2Q15596 1464 aa29.46■■■□□ 2.31
CHMP4A-201ENST00000347519 KCNH8Q96L42 1107 aa29.43■■■□□ 2.3
CHMP4A-201ENST00000347519 PHLDB1Q86UU1 1377 aa29.4■■■□□ 2.3
CHMP4A-201ENST00000347519 ABCC10Q5T3U5 1492 aa29.39■■■□□ 2.3
CHMP4A-201ENST00000347519 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.37■■■□□ 2.29
CHMP4A-201ENST00000347519 TTC37Q6PGP7 1564 aa29.37■■■□□ 2.29
CHMP4A-201ENST00000347519 CDC42BPAQ5VT25 1732 aa29.31■■■□□ 2.28
CHMP4A-201ENST00000347519 ABCA9Q8IUA7 1624 aa29.29■■■□□ 2.28
CHMP4A-201ENST00000347519 GPATCH8Q9UKJ3 1502 aaKnown RBP29.28■■■□□ 2.28
CHMP4A-201ENST00000347519 DIP2BQ9P265 1576 aa29.28■■■□□ 2.28
CHMP4A-201ENST00000347519 CCNB3Q8WWL7 1395 aa29.27■■■□□ 2.28
CHMP4A-201ENST00000347519 MYOM3Q5VTT5 1437 aa29.26■■■□□ 2.27
CHMP4A-201ENST00000347519 MYO5CQ9NQX4 1742 aa29.24■■■□□ 2.27
CHMP4A-201ENST00000347519 CDC42BPBQ9Y5S2 1711 aa29.23■■■□□ 2.27
CHMP4A-201ENST00000347519 GLI2P10070 1586 aa29.23■■■□□ 2.27
CHMP4A-201ENST00000347519 ITSN2Q9NZM3 1697 aa29.23■■■□□ 2.27
CHMP4A-201ENST00000347519 PREX2Q70Z35 1606 aa29.22■■■□□ 2.27
CHMP4A-201ENST00000347519 KIF13AQ9H1H9 1805 aa29.22■■■□□ 2.27
CHMP4A-201ENST00000347519 FGD6Q6ZV73 1430 aa29.2■■■□□ 2.26
CHMP4A-201ENST00000347519 RRBP1Q9P2E9 1410 aaKnown RBP29.18■■■□□ 2.26
CHMP4A-201ENST00000347519 FAM69CQ0P6D2 419 aa29.17■■■□□ 2.26
CHMP4A-201ENST00000347519 MAP3K4Q9Y6R4 1608 aa29.17■■■□□ 2.26
CHMP4A-201ENST00000347519 PLCH2O75038 1416 aa29.15■■■□□ 2.26
CHMP4A-201ENST00000347519 PTPN23Q9H3S7 1636 aa29.15■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms