RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 NISCHQ9Y2I1 1504 aa44.76■■■■■ 4.76
CHMP4A-201ENST00000347519 CCDC180Q9P1Z9 1646 aa39.38■■■■□ 3.89
CHMP4A-201ENST00000347519 ABCC9O60706 1549 aa37.84■■■■□ 3.65
CHMP4A-201ENST00000347519 ZCCHC6Q5VYS8 1495 aaKnown RBP37.46■■■■□ 3.59
CHMP4A-201ENST00000347519 DCAF8L2P0C7V8 631 aa37.08■■■■□ 3.53
CHMP4A-201ENST00000347519 DCAF1Q9Y4B6 1507 aa36.99■■■■□ 3.51
CHMP4A-201ENST00000347519 NACADO15069 1562 aa36.8■■■■□ 3.48
CHMP4A-201ENST00000347519 MYO15BQ96JP2 1530 aa36.8■■■■□ 3.48
CHMP4A-201ENST00000347519 RB1CC1Q8TDY2 1594 aa36.65■■■■□ 3.46
CHMP4A-201ENST00000347519 SCRIBQ14160 1630 aa36.11■■■■□ 3.37
CHMP4A-201ENST00000347519 UNC13AQ9UPW8 1703 aa36■■■■□ 3.35
CHMP4A-201ENST00000347519 SHROOM4Q9ULL8 1493 aa35.97■■■■□ 3.35
CHMP4A-201ENST00000347519 BICRAQ9NZM4 1560 aa35.64■■■■□ 3.3
CHMP4A-201ENST00000347519 PABPN1Q86U42 306 aaKnown RBP eCLIP35.52■■■■□ 3.28
CHMP4A-201ENST00000347519 DNAJC5BQ9UF47 199 aa35.05■■■■□ 3.2
CHMP4A-201ENST00000347519 CECR2Q9BXF3 1484 aa34.86■■■■□ 3.17
CHMP4A-201ENST00000347519 BAZ1AQ9NRL2 1556 aaPredicted RBP34.58■■■■□ 3.13
CHMP4A-201ENST00000347519 MROH2BQ7Z745 1585 aa34.57■■■■□ 3.13
CHMP4A-201ENST00000347519 EIF4G1Q04637 1599 aaKnown RBP34.57■■■■□ 3.12
CHMP4A-201ENST00000347519 SMARCA4P51532 1647 aa34.57■■■■□ 3.12
CHMP4A-201ENST00000347519 RSF1Q96T23 1441 aaPredicted RBP34.43■■■■□ 3.1
CHMP4A-201ENST00000347519 WIZO95785 1651 aa34.27■■■■□ 3.08
CHMP4A-201ENST00000347519 CC2D2AQ9P2K1 1620 aa34.25■■■■□ 3.07
CHMP4A-201ENST00000347519 SUPT5HO00267 1087 aaKnown RBP34.22■■■■□ 3.07
CHMP4A-201ENST00000347519 PEG3Q9GZU2 1588 aa34.16■■■■□ 3.06
CHMP4A-201ENST00000347519 ATAD2BQ9ULI0 1458 aa34.15■■■■□ 3.06
CHMP4A-201ENST00000347519 SMARCA2P51531 1590 aa34.09■■■■□ 3.05
CHMP4A-201ENST00000347519 NCAPD3P42695 1498 aa33.96■■■■□ 3.03
CHMP4A-201ENST00000347519 BAZ1BQ9UIG0 1483 aaKnown RBP33.89■■■■□ 3.02
CHMP4A-201ENST00000347519 TOP2AP11388 1531 aaKnown RBP33.86■■■■□ 3.01
CHMP4A-201ENST00000347519 HMGXB3Q12766 1538 aa33.86■■■■□ 3.01
CHMP4A-201ENST00000347519 CCDC88BA6NC98 1476 aa33.5■■■□□ 2.95
CHMP4A-201ENST00000347519 NESP48681 1621 aa33.03■■■□□ 2.88
CHMP4A-201ENST00000347519 CADPSQ9ULU8 1353 aa33.03■■■□□ 2.88
CHMP4A-201ENST00000347519 CFTRP13569 1480 aa33.02■■■□□ 2.88
CHMP4A-201ENST00000347519 LAMC3Q9Y6N6 1575 aa32.93■■■□□ 2.86
CHMP4A-201ENST00000347519 PRDM2Q13029 1718 aa32.88■■■□□ 2.85
CHMP4A-201ENST00000347519 FANCD2Q9BXW9 1451 aa32.67■■■□□ 2.82
CHMP4A-201ENST00000347519 KIF21AQ7Z4S6 1674 aa32.65■■■□□ 2.82
CHMP4A-201ENST00000347519 PDS5BQ9NTI5 1447 aa32.65■■■□□ 2.82
CHMP4A-201ENST00000347519 ABCC8Q09428 1581 aa32.59■■■□□ 2.81
CHMP4A-201ENST00000347519 CEP164Q9UPV0 1460 aa32.53■■■□□ 2.8
CHMP4A-201ENST00000347519 ERCC6Q03468 1493 aa32.45■■■□□ 2.79
CHMP4A-201ENST00000347519 CHIC1Q5VXU3 224 aa32.43■■■□□ 2.78
CHMP4A-201ENST00000347519 WRNQ14191 1432 aaPredicted RBP eCLIP32.4■■■□□ 2.78
CHMP4A-201ENST00000347519 CUX1P39880 1505 aa32.37■■■□□ 2.77
CHMP4A-201ENST00000347519 SYNJ1O43426 1573 aa32.37■■■□□ 2.77
CHMP4A-201ENST00000347519 URB2Q14146 1524 aaKnown RBP32.35■■■□□ 2.77
CHMP4A-201ENST00000347519 MRC2Q9UBG0 1479 aa32.32■■■□□ 2.76
CHMP4A-201ENST00000347519 THOC2Q8NI27 1593 aaKnown RBP32.3■■■□□ 2.76
CHMP4A-201ENST00000347519 DNMBPQ6XZF7 1577 aa32.28■■■□□ 2.76
CHMP4A-201ENST00000347519 BIVM-ERCC5R4GMW8 1640 aa32.27■■■□□ 2.76
CHMP4A-201ENST00000347519 TOPBP1Q92547 1522 aa32.27■■■□□ 2.76
CHMP4A-201ENST00000347519 TOP2BQ02880 1626 aa32.26■■■□□ 2.75
CHMP4A-201ENST00000347519 CUX2O14529 1486 aa32.24■■■□□ 2.75
CHMP4A-201ENST00000347519 TRIM41Q8WV44 630 aa32.2■■■□□ 2.75
CHMP4A-201ENST00000347519 WDR62O43379 1518 aa32.2■■■□□ 2.74
CHMP4A-201ENST00000347519 FGD5Q6ZNL6 1462 aa32.1■■■□□ 2.73
CHMP4A-201ENST00000347519 DNAJC5Q9H3Z4 198 aa32.06■■■□□ 2.72
CHMP4A-201ENST00000347519 POLA1P09884 1462 aaPredicted RBP32.05■■■□□ 2.72
CHMP4A-201ENST00000347519 RAD54L2Q9Y4B4 1467 aa31.96■■■□□ 2.71
CHMP4A-201ENST00000347519 SOGA1O94964 1423 aa31.91■■■□□ 2.7
CHMP4A-201ENST00000347519 TARBP1Q13395 1621 aaKnown RBP31.87■■■□□ 2.69
CHMP4A-201ENST00000347519 WDR97A6NE52 1622 aa31.83■■■□□ 2.69
CHMP4A-201ENST00000347519 IFT140Q96RY7 1462 aa31.8■■■□□ 2.68
CHMP4A-201ENST00000347519 ABCA10Q8WWZ4 1543 aa31.79■■■□□ 2.68
CHMP4A-201ENST00000347519 RUSC2Q8N2Y8 1516 aa31.77■■■□□ 2.68
CHMP4A-201ENST00000347519 ZNF608Q9ULD9 1512 aaPredicted RBP31.7■■■□□ 2.67
CHMP4A-201ENST00000347519 TDRD9Q8NDG6 1382 aaKnown RBP31.67■■■□□ 2.66
CHMP4A-201ENST00000347519 ABCA5Q8WWZ7 1642 aa31.63■■■□□ 2.65
CHMP4A-201ENST00000347519 FAM9AQ8IZU1 332 aaPredicted RBP31.63■■■□□ 2.65
CHMP4A-201ENST00000347519 KIF27Q86VH2 1401 aa31.63■■■□□ 2.65
CHMP4A-201ENST00000347519 AQRO60306 1485 aaKnown RBP eCLIP31.6■■■□□ 2.654e-8■■■■□ 23.3
CHMP4A-201ENST00000347519 EIF4G3O43432 1585 aaKnown RBP31.57■■■□□ 2.64
CHMP4A-201ENST00000347519 GAPVD1Q14C86 1478 aa31.55■■■□□ 2.64
CHMP4A-201ENST00000347519 EEA1Q15075 1411 aa31.53■■■□□ 2.64
CHMP4A-201ENST00000347519 PBRM1Q86U86 1689 aa31.49■■■□□ 2.63
CHMP4A-201ENST00000347519 IGF1RP08069 1367 aa31.46■■■□□ 2.63
CHMP4A-201ENST00000347519 CSRNP3Q8WYN3 585 aa31.44■■■□□ 2.62
CHMP4A-201ENST00000347519 GRIN2BQ13224 1484 aa31.41■■■□□ 2.62
CHMP4A-201ENST00000347519 ERICH3Q5RHP9 1530 aa31.4■■■□□ 2.62
CHMP4A-201ENST00000347519 SNAPC4Q5SXM2 1469 aa31.31■■■□□ 2.6
CHMP4A-201ENST00000347519 CUL7Q14999 1698 aa31.29■■■□□ 2.6
CHMP4A-201ENST00000347519 PRXQ9BXM0 1461 aa31.28■■■□□ 2.6
CHMP4A-201ENST00000347519 ADAMTS12P58397 1594 aa31.26■■■□□ 2.6
CHMP4A-201ENST00000347519 CARMIL1Q5VZK9 1371 aa31.26■■■□□ 2.6
CHMP4A-201ENST00000347519 KIF21BO75037 1637 aa31.23■■■□□ 2.59
CHMP4A-201ENST00000347519 MAGI1Q96QZ7 1491 aaPredicted RBP31.22■■■□□ 2.59
CHMP4A-201ENST00000347519 EHMT2Q96KQ7 1210 aa31.21■■■□□ 2.59
CHMP4A-201ENST00000347519 RAPGEF2Q9Y4G8 1499 aa31.19■■■□□ 2.58
CHMP4A-201ENST00000347519 FHAD1B1AJZ9 1412 aa31.19■■■□□ 2.58
CHMP4A-201ENST00000347519 LOC105371045A0A1W2PR82 267 aa31.17■■■□□ 2.58
CHMP4A-201ENST00000347519 SYNJ2O15056 1496 aa31.1■■■□□ 2.57
CHMP4A-201ENST00000347519 GOLGA3Q08378 1498 aa31.09■■■□□ 2.57
CHMP4A-201ENST00000347519 CHD1O14646 1710 aa31.06■■■□□ 2.56
CHMP4A-201ENST00000347519 GRIN2AQ12879 1464 aa31.04■■■□□ 2.56
CHMP4A-201ENST00000347519 FBLN2P98095 1184 aa31.02■■■□□ 2.56
CHMP4A-201ENST00000347519 CHMP7Q8WUX9 453 aaPredicted RBP31.02■■■□□ 2.56
CHMP4A-201ENST00000347519 UBTFP17480 764 aaKnown RBP30.94■■■□□ 2.54
CHMP4A-201ENST00000347519 CEP170Q5SW79 1584 aa30.9■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms