RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 NISCHQ9Y2I1 1504 aa44.76■■■■■ 4.76
CHMP4A-201ENST00000347519 CCDC180Q9P1Z9 1646 aa39.38■■■■□ 3.89
CHMP4A-201ENST00000347519 ABCC9O60706 1549 aa37.84■■■■□ 3.65
CHMP4A-201ENST00000347519 ZCCHC6Q5VYS8 1495 aaKnown RBP37.46■■■■□ 3.59
CHMP4A-201ENST00000347519 DCAF8L2P0C7V8 631 aa37.08■■■■□ 3.53
CHMP4A-201ENST00000347519 DCAF1Q9Y4B6 1507 aa36.99■■■■□ 3.51
CHMP4A-201ENST00000347519 NACADO15069 1562 aa36.8■■■■□ 3.48
CHMP4A-201ENST00000347519 MYO15BQ96JP2 1530 aa36.8■■■■□ 3.48
CHMP4A-201ENST00000347519 RB1CC1Q8TDY2 1594 aa36.65■■■■□ 3.46
CHMP4A-201ENST00000347519 SCRIBQ14160 1630 aa36.11■■■■□ 3.37
CHMP4A-201ENST00000347519 UNC13AQ9UPW8 1703 aa36■■■■□ 3.35
CHMP4A-201ENST00000347519 SHROOM4Q9ULL8 1493 aa35.97■■■■□ 3.35
CHMP4A-201ENST00000347519 BICRAQ9NZM4 1560 aa35.64■■■■□ 3.3
CHMP4A-201ENST00000347519 PABPN1Q86U42 306 aaKnown RBP eCLIP35.52■■■■□ 3.28
CHMP4A-201ENST00000347519 DNAJC5BQ9UF47 199 aa35.05■■■■□ 3.2
CHMP4A-201ENST00000347519 CECR2Q9BXF3 1484 aa34.86■■■■□ 3.17
CHMP4A-201ENST00000347519 BAZ1AQ9NRL2 1556 aaPredicted RBP34.58■■■■□ 3.13
CHMP4A-201ENST00000347519 MROH2BQ7Z745 1585 aa34.57■■■■□ 3.13
CHMP4A-201ENST00000347519 EIF4G1Q04637 1599 aaKnown RBP34.57■■■■□ 3.12
CHMP4A-201ENST00000347519 SMARCA4P51532 1647 aa34.57■■■■□ 3.12
CHMP4A-201ENST00000347519 RSF1Q96T23 1441 aaPredicted RBP34.43■■■■□ 3.1
CHMP4A-201ENST00000347519 WIZO95785 1651 aa34.27■■■■□ 3.08
CHMP4A-201ENST00000347519 CC2D2AQ9P2K1 1620 aa34.25■■■■□ 3.07
CHMP4A-201ENST00000347519 SUPT5HO00267 1087 aaKnown RBP34.22■■■■□ 3.07
CHMP4A-201ENST00000347519 PEG3Q9GZU2 1588 aa34.16■■■■□ 3.06
CHMP4A-201ENST00000347519 ATAD2BQ9ULI0 1458 aa34.15■■■■□ 3.06
CHMP4A-201ENST00000347519 SMARCA2P51531 1590 aa34.09■■■■□ 3.05
CHMP4A-201ENST00000347519 NCAPD3P42695 1498 aa33.96■■■■□ 3.03
CHMP4A-201ENST00000347519 BAZ1BQ9UIG0 1483 aaKnown RBP33.89■■■■□ 3.02
CHMP4A-201ENST00000347519 TOP2AP11388 1531 aaKnown RBP33.86■■■■□ 3.01
CHMP4A-201ENST00000347519 HMGXB3Q12766 1538 aa33.86■■■■□ 3.01
CHMP4A-201ENST00000347519 CCDC88BA6NC98 1476 aa33.5■■■□□ 2.95
CHMP4A-201ENST00000347519 NESP48681 1621 aa33.03■■■□□ 2.88
CHMP4A-201ENST00000347519 CADPSQ9ULU8 1353 aa33.03■■■□□ 2.88
CHMP4A-201ENST00000347519 CFTRP13569 1480 aa33.02■■■□□ 2.88
CHMP4A-201ENST00000347519 LAMC3Q9Y6N6 1575 aa32.93■■■□□ 2.86
CHMP4A-201ENST00000347519 PRDM2Q13029 1718 aa32.88■■■□□ 2.85
CHMP4A-201ENST00000347519 FANCD2Q9BXW9 1451 aa32.67■■■□□ 2.82
CHMP4A-201ENST00000347519 KIF21AQ7Z4S6 1674 aa32.65■■■□□ 2.82
CHMP4A-201ENST00000347519 PDS5BQ9NTI5 1447 aa32.65■■■□□ 2.82
CHMP4A-201ENST00000347519 ABCC8Q09428 1581 aa32.59■■■□□ 2.81
CHMP4A-201ENST00000347519 CEP164Q9UPV0 1460 aa32.53■■■□□ 2.8
CHMP4A-201ENST00000347519 ERCC6Q03468 1493 aa32.45■■■□□ 2.79
CHMP4A-201ENST00000347519 CHIC1Q5VXU3 224 aa32.43■■■□□ 2.78
CHMP4A-201ENST00000347519 WRNQ14191 1432 aaPredicted RBP eCLIP32.4■■■□□ 2.78
CHMP4A-201ENST00000347519 CUX1P39880 1505 aa32.37■■■□□ 2.77
CHMP4A-201ENST00000347519 SYNJ1O43426 1573 aa32.37■■■□□ 2.77
CHMP4A-201ENST00000347519 URB2Q14146 1524 aaKnown RBP32.35■■■□□ 2.77
CHMP4A-201ENST00000347519 MRC2Q9UBG0 1479 aa32.32■■■□□ 2.76
CHMP4A-201ENST00000347519 THOC2Q8NI27 1593 aaKnown RBP32.3■■■□□ 2.76
CHMP4A-201ENST00000347519 DNMBPQ6XZF7 1577 aa32.28■■■□□ 2.76
CHMP4A-201ENST00000347519 BIVM-ERCC5R4GMW8 1640 aa32.27■■■□□ 2.76
CHMP4A-201ENST00000347519 TOPBP1Q92547 1522 aa32.27■■■□□ 2.76
CHMP4A-201ENST00000347519 TOP2BQ02880 1626 aa32.26■■■□□ 2.75
CHMP4A-201ENST00000347519 CUX2O14529 1486 aa32.24■■■□□ 2.75
CHMP4A-201ENST00000347519 TRIM41Q8WV44 630 aa32.2■■■□□ 2.75
CHMP4A-201ENST00000347519 WDR62O43379 1518 aa32.2■■■□□ 2.74
CHMP4A-201ENST00000347519 FGD5Q6ZNL6 1462 aa32.1■■■□□ 2.73
CHMP4A-201ENST00000347519 DNAJC5Q9H3Z4 198 aa32.06■■■□□ 2.72
CHMP4A-201ENST00000347519 POLA1P09884 1462 aaPredicted RBP32.05■■■□□ 2.72
CHMP4A-201ENST00000347519 RAD54L2Q9Y4B4 1467 aa31.96■■■□□ 2.71
CHMP4A-201ENST00000347519 SOGA1O94964 1423 aa31.91■■■□□ 2.7
CHMP4A-201ENST00000347519 TARBP1Q13395 1621 aaKnown RBP31.87■■■□□ 2.69
CHMP4A-201ENST00000347519 WDR97A6NE52 1622 aa31.83■■■□□ 2.69
CHMP4A-201ENST00000347519 IFT140Q96RY7 1462 aa31.8■■■□□ 2.68
CHMP4A-201ENST00000347519 ABCA10Q8WWZ4 1543 aa31.79■■■□□ 2.68
CHMP4A-201ENST00000347519 RUSC2Q8N2Y8 1516 aa31.77■■■□□ 2.68
CHMP4A-201ENST00000347519 ZNF608Q9ULD9 1512 aaPredicted RBP31.7■■■□□ 2.67
CHMP4A-201ENST00000347519 TDRD9Q8NDG6 1382 aaKnown RBP31.67■■■□□ 2.66
CHMP4A-201ENST00000347519 ABCA5Q8WWZ7 1642 aa31.63■■■□□ 2.65
CHMP4A-201ENST00000347519 FAM9AQ8IZU1 332 aaPredicted RBP31.63■■■□□ 2.65
CHMP4A-201ENST00000347519 KIF27Q86VH2 1401 aa31.63■■■□□ 2.65
CHMP4A-201ENST00000347519 AQRO60306 1485 aaKnown RBP eCLIP31.6■■■□□ 2.654e-8■■■■□ 23.3
CHMP4A-201ENST00000347519 EIF4G3O43432 1585 aaKnown RBP31.57■■■□□ 2.64
CHMP4A-201ENST00000347519 GAPVD1Q14C86 1478 aa31.55■■■□□ 2.64
CHMP4A-201ENST00000347519 EEA1Q15075 1411 aa31.53■■■□□ 2.64
CHMP4A-201ENST00000347519 PBRM1Q86U86 1689 aa31.49■■■□□ 2.63
CHMP4A-201ENST00000347519 IGF1RP08069 1367 aa31.46■■■□□ 2.63
CHMP4A-201ENST00000347519 CSRNP3Q8WYN3 585 aa31.44■■■□□ 2.62
CHMP4A-201ENST00000347519 GRIN2BQ13224 1484 aa31.41■■■□□ 2.62
CHMP4A-201ENST00000347519 ERICH3Q5RHP9 1530 aa31.4■■■□□ 2.62
CHMP4A-201ENST00000347519 SNAPC4Q5SXM2 1469 aa31.31■■■□□ 2.6
CHMP4A-201ENST00000347519 CUL7Q14999 1698 aa31.29■■■□□ 2.6
CHMP4A-201ENST00000347519 PRXQ9BXM0 1461 aa31.28■■■□□ 2.6
CHMP4A-201ENST00000347519 ADAMTS12P58397 1594 aa31.26■■■□□ 2.6
CHMP4A-201ENST00000347519 CARMIL1Q5VZK9 1371 aa31.26■■■□□ 2.6
CHMP4A-201ENST00000347519 KIF21BO75037 1637 aa31.23■■■□□ 2.59
CHMP4A-201ENST00000347519 MAGI1Q96QZ7 1491 aaPredicted RBP31.22■■■□□ 2.59
CHMP4A-201ENST00000347519 EHMT2Q96KQ7 1210 aa31.21■■■□□ 2.59
CHMP4A-201ENST00000347519 RAPGEF2Q9Y4G8 1499 aa31.19■■■□□ 2.58
CHMP4A-201ENST00000347519 FHAD1B1AJZ9 1412 aa31.19■■■□□ 2.58
CHMP4A-201ENST00000347519 LOC105371045A0A1W2PR82 267 aa31.17■■■□□ 2.58
CHMP4A-201ENST00000347519 SYNJ2O15056 1496 aa31.1■■■□□ 2.57
CHMP4A-201ENST00000347519 GOLGA3Q08378 1498 aa31.09■■■□□ 2.57
CHMP4A-201ENST00000347519 CHD1O14646 1710 aa31.06■■■□□ 2.56
CHMP4A-201ENST00000347519 GRIN2AQ12879 1464 aa31.04■■■□□ 2.56
CHMP4A-201ENST00000347519 FBLN2P98095 1184 aa31.02■■■□□ 2.56
CHMP4A-201ENST00000347519 CHMP7Q8WUX9 453 aaPredicted RBP31.02■■■□□ 2.56
CHMP4A-201ENST00000347519 UBTFP17480 764 aaKnown RBP30.94■■■□□ 2.54
CHMP4A-201ENST00000347519 CEP170Q5SW79 1584 aa30.9■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms