RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 CCER1Q8TC90 406 aaPredicted RBP17.52■□□□□ 0.39
RTN3-203ENST00000341307 IFT140Q96RY7 1462 aa17.5■□□□□ 0.39
RTN3-203ENST00000341307 TARBP1Q13395 1621 aaKnown RBP17.49■□□□□ 0.39
RTN3-203ENST00000341307 KIF27Q86VH2 1401 aa17.48■□□□□ 0.39
RTN3-203ENST00000341307 PRXQ9BXM0 1461 aa17.45■□□□□ 0.38
RTN3-203ENST00000341307 CLIP1P30622 1438 aa17.45■□□□□ 0.38
RTN3-203ENST00000341307 MIER1Q8N108 512 aa17.44■□□□□ 0.38
RTN3-203ENST00000341307 ZNF316A6NFI3 1004 aaPredicted RBP17.42■□□□□ 0.38
RTN3-203ENST00000341307 CLSPNQ9HAW4 1339 aa17.41■□□□□ 0.38
RTN3-203ENST00000341307 EIF4G3O43432 1585 aaKnown RBP17.4■□□□□ 0.38
RTN3-203ENST00000341307 ERICH3Q5RHP9 1530 aa17.38■□□□□ 0.37
RTN3-203ENST00000341307 FBLN2P98095 1184 aa17.38■□□□□ 0.37
RTN3-203ENST00000341307 ABCA10Q8WWZ4 1543 aa17.37■□□□□ 0.37
RTN3-203ENST00000341307 IGF1RP08069 1367 aa17.35■□□□□ 0.37
RTN3-203ENST00000341307 GAPVD1Q14C86 1478 aa17.34■□□□□ 0.37
RTN3-203ENST00000341307 ANO8Q9HCE9 1232 aaPredicted RBP17.34■□□□□ 0.37
RTN3-203ENST00000341307 WDR97A6NE52 1622 aa17.33■□□□□ 0.36
RTN3-203ENST00000341307 VPS8Q8N3P4 1428 aa17.3■□□□□ 0.36
RTN3-203ENST00000341307 SNAPC4Q5SXM2 1469 aa17.29■□□□□ 0.36
RTN3-203ENST00000341307 ABCA5Q8WWZ7 1642 aa17.27■□□□□ 0.36
RTN3-203ENST00000341307 CARMIL1Q5VZK9 1371 aa17.26■□□□□ 0.35
RTN3-203ENST00000341307 GRIN2BQ13224 1484 aa17.26■□□□□ 0.35
RTN3-203ENST00000341307 CHMP7Q8WUX9 453 aaPredicted RBP17.24■□□□□ 0.35
RTN3-203ENST00000341307 ARAP1Q96P48 1450 aa17.24■□□□□ 0.35
RTN3-203ENST00000341307 PBRM1Q86U86 1689 aa17.21■□□□□ 0.35
RTN3-203ENST00000341307 OSCARQ8IYS5 282 aa17.19■□□□□ 0.34
RTN3-203ENST00000341307 ARHGAP35Q9NRY4 1499 aa17.17■□□□□ 0.34
RTN3-203ENST00000341307 RBM19Q9Y4C8 960 aaKnown RBP17.15■□□□□ 0.34
RTN3-203ENST00000341307 MAGI1Q96QZ7 1491 aaPredicted RBP17.15■□□□□ 0.34
RTN3-203ENST00000341307 MSH5O43196 834 aa17.14■□□□□ 0.33
RTN3-203ENST00000341307 CHD1O14646 1710 aa17.14■□□□□ 0.33
RTN3-203ENST00000341307 DNAJC5Q9H3Z4 198 aa17.13■□□□□ 0.33
RTN3-203ENST00000341307 SYNJ2O15056 1496 aa17.12■□□□□ 0.33
RTN3-203ENST00000341307 FHAD1B1AJZ9 1412 aa17.1■□□□□ 0.33
RTN3-203ENST00000341307 ADAMTS12P58397 1594 aa17.1■□□□□ 0.33
RTN3-203ENST00000341307 KANK4Q5T7N3 995 aaPredicted RBP17.1■□□□□ 0.33
RTN3-203ENST00000341307 P3H3Q8IVL6 736 aa17.09■□□□□ 0.33
RTN3-203ENST00000341307 GRIN2AQ12879 1464 aa17.07■□□□□ 0.32
RTN3-203ENST00000341307 UBE2Q2Q8WVN8 375 aa17.07■□□□□ 0.32
RTN3-203ENST00000341307 SALL2Q9Y467 1007 aaPredicted RBP17.07■□□□□ 0.32
RTN3-203ENST00000341307 HNRNPUL2Q1KMD3 747 aaKnown RBP17.06■□□□□ 0.32
RTN3-203ENST00000341307 CUL7Q14999 1698 aa17.05■□□□□ 0.32
RTN3-203ENST00000341307 CEP170Q5SW79 1584 aa17■□□□□ 0.31
RTN3-203ENST00000341307 DEKP35659 375 aaKnown RBP16.99■□□□□ 0.31
RTN3-203ENST00000341307 FHOD3Q2V2M9 1422 aa16.98■□□□□ 0.31
RTN3-203ENST00000341307 BCANQ96GW7 911 aa16.98■□□□□ 0.31
RTN3-203ENST00000341307 CTTNBP2Q8WZ74 1663 aa16.97■□□□□ 0.31
RTN3-203ENST00000341307 ATP1B4Q9UN42 357 aaPredicted RBP16.96■□□□□ 0.31
RTN3-203ENST00000341307 CCDC136Q96JN2 1154 aa16.96■□□□□ 0.3
RTN3-203ENST00000341307 NUP160Q12769 1436 aa16.96■□□□□ 0.3
RTN3-203ENST00000341307 MYT1LQ9UL68 1186 aa16.94■□□□□ 0.3
RTN3-203ENST00000341307 JPH4Q96JJ6 628 aa16.92■□□□□ 0.3
RTN3-203ENST00000341307 CLASP1Q7Z460 1538 aa16.92■□□□□ 0.3
RTN3-203ENST00000341307 PCF11O94913 1555 aaKnown RBP16.91■□□□□ 0.3
RTN3-203ENST00000341307 ERCC6L2Q5T890 1561 aa16.9■□□□□ 0.3
RTN3-203ENST00000341307 ERICH6BQ5W0A0 696 aa16.9■□□□□ 0.3
RTN3-203ENST00000341307 TIAM1Q13009 1591 aa16.89■□□□□ 0.29
RTN3-203ENST00000341307 CYB5RLQ6IPT4 315 aa16.88■□□□□ 0.29
RTN3-203ENST00000341307 EFCAB5A4FU69 1503 aa16.87■□□□□ 0.29
RTN3-203ENST00000341307 ARHGEF11O15085 1522 aa16.87■□□□□ 0.29
RTN3-203ENST00000341307 FANCIQ9NVI1 1328 aa16.87■□□□□ 0.29
RTN3-203ENST00000341307 KIAA0586Q9BVV6 1533 aa16.84■□□□□ 0.29
RTN3-203ENST00000341307 FKBP8Q14318 412 aa16.84■□□□□ 0.29
RTN3-203ENST00000341307 RIMBP3CA6NJZ7 1639 aa16.83■□□□□ 0.29
RTN3-203ENST00000341307 RIMBP3BA6NNM3 1639 aa16.83■□□□□ 0.29
RTN3-203ENST00000341307 RIMBP3Q9UFD9 1639 aa16.83■□□□□ 0.29
RTN3-203ENST00000341307 PRG4Q92954 1404 aaPredicted RBP16.83■□□□□ 0.29
RTN3-203ENST00000341307 LRRC9Q6ZRR7 1453 aa16.83■□□□□ 0.28
RTN3-203ENST00000341307 ITGAEP38570 1179 aa16.82■□□□□ 0.28
RTN3-203ENST00000341307 RRBP1Q9P2E9 1410 aaKnown RBP16.82■□□□□ 0.28
RTN3-203ENST00000341307 SAMD9Q5K651 1589 aa16.8■□□□□ 0.28
RTN3-203ENST00000341307 MAP3K1Q13233 1512 aa16.8■□□□□ 0.28
RTN3-203ENST00000341307 CASKIN1Q8WXD9 1431 aa16.79■□□□□ 0.28
RTN3-203ENST00000341307 CCNB3Q8WWL7 1395 aa16.79■□□□□ 0.28
RTN3-203ENST00000341307 FYCO1Q9BQS8 1478 aa16.78■□□□□ 0.28
RTN3-203ENST00000341307 CFAP43Q8NDM7 1665 aa16.78■□□□□ 0.28
RTN3-203ENST00000341307 FMN1Q68DA7 1419 aa16.78■□□□□ 0.28
RTN3-203ENST00000341307 PHLDB1Q86UU1 1377 aa16.77■□□□□ 0.28
RTN3-203ENST00000341307 IQGAP2Q13576 1575 aa16.77■□□□□ 0.28
RTN3-203ENST00000341307 EIF5BO60841 1220 aaKnown RBP16.75■□□□□ 0.27
RTN3-203ENST00000341307 SHROOM2Q13796 1616 aa16.74■□□□□ 0.27
RTN3-203ENST00000341307 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.73■□□□□ 0.27
RTN3-203ENST00000341307 LRRIQ1Q96JM4 1722 aa16.72■□□□□ 0.27
RTN3-203ENST00000341307 DISP1Q96F81 1524 aa16.71■□□□□ 0.27
RTN3-203ENST00000341307 FAM50AQ14320 339 aaKnown RBP16.7■□□□□ 0.26
RTN3-203ENST00000341307 ARID3CA6NKF2 412 aa16.68■□□□□ 0.26
RTN3-203ENST00000341307 IL27Q8NEV9 243 aa16.66■□□□□ 0.26
RTN3-203ENST00000341307 UGGT2Q9NYU1 1516 aa16.65■□□□□ 0.26
RTN3-203ENST00000341307 MTUS2Q5JR59 1369 aa16.65■□□□□ 0.26
RTN3-203ENST00000341307 KCNH8Q96L42 1107 aa16.64■□□□□ 0.25
RTN3-203ENST00000341307 CARMIL2Q6F5E8 1435 aa16.64■□□□□ 0.25
RTN3-203ENST00000341307 DHX57Q6P158 1386 aaKnown RBP16.64■□□□□ 0.25
RTN3-203ENST00000341307 PTPRGP23470 1445 aa16.64■□□□□ 0.25
RTN3-203ENST00000341307 SLC24A1O60721 1099 aa16.63■□□□□ 0.25
RTN3-203ENST00000341307 PKNOX2Q96KN3 472 aa16.63■□□□□ 0.25
RTN3-203ENST00000341307 KIAA0556O60303 1618 aa16.61■□□□□ 0.25
RTN3-203ENST00000341307 MAGI3Q5TCQ9 1506 aa16.6■□□□□ 0.25
RTN3-203ENST00000341307 RTN4Q9NQC3 1192 aaKnown RBP16.59■□□□□ 0.25
RTN3-203ENST00000341307 RAB3GAP2Q9H2M9 1393 aa16.58■□□□□ 0.24
RTN3-203ENST00000341307 PLB1Q6P1J6 1458 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms